Wall clock time and date at job start Wed Apr 1 2020 03:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50696 * 109.47466 * 2 1 4 4 C 1.34982 * 119.99821 * 95.00583 * 3 2 1 5 5 C 1.46254 * 120.00348 * 180.02562 * 4 3 2 6 6 O 1.21718 * 119.99832 * 359.97438 * 5 4 3 7 7 N 1.34770 * 120.00589 * 179.97438 * 5 4 3 8 8 C 1.47433 * 125.64428 * 359.95646 * 7 5 4 9 9 C 1.55393 * 104.87396 * 204.16622 * 8 7 5 10 10 C 1.55158 * 101.36604 * 323.02138 * 9 8 7 11 11 O 1.42905 * 110.71665 * 277.04214 * 10 9 8 12 12 C 1.50698 * 110.72071 * 153.94900 * 10 9 8 13 13 H 1.08000 * 120.00108 * 2.43313 * 12 10 9 14 14 C 1.37875 * 119.99880 * 182.43864 * 12 10 9 15 15 N 1.31516 * 120.00122 * 359.97438 * 14 12 10 16 16 Si 1.86797 * 120.00107 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47033 * 59.99945 * 16 14 12 18 18 H 1.48501 * 109.47466 * 180.02562 * 16 14 12 19 19 H 1.48507 * 109.47176 * 300.00326 * 16 14 12 20 20 C 1.47023 * 125.65372 * 179.97438 * 7 5 4 21 21 C 1.47001 * 120.00474 * 275.00063 * 3 2 1 22 22 C 1.39972 * 120.10632 * 64.72507 * 21 3 2 23 23 C 1.37666 * 119.88035 * 179.67495 * 22 21 3 24 24 C 1.39020 * 120.11366 * 0.62106 * 23 22 21 25 25 O 1.35736 * 119.88729 * 179.69240 * 24 23 22 26 26 C 1.42895 * 117.00083 * 359.97438 * 25 24 23 27 27 C 1.39019 * 120.22864 * 359.67734 * 24 23 22 28 28 C 1.37664 * 120.11550 * 359.97438 * 27 24 23 29 29 H 1.09001 * 109.47371 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47083 * 299.99898 * 1 2 3 31 31 H 1.09001 * 109.47522 * 59.99445 * 1 2 3 32 32 H 1.09000 * 109.47083 * 240.00102 * 2 1 3 33 33 H 1.09001 * 109.47522 * 120.00555 * 2 1 3 34 34 H 1.08000 * 119.99754 * 359.97438 * 4 3 2 35 35 H 1.08994 * 110.36621 * 323.00423 * 8 7 5 36 36 H 1.09005 * 110.36538 * 85.21633 * 8 7 5 37 37 H 1.09003 * 111.18887 * 204.98028 * 9 8 7 38 38 H 1.08998 * 111.02037 * 80.98017 * 9 8 7 39 39 H 0.96696 * 114.00036 * 177.55969 * 11 10 9 40 40 H 0.97000 * 119.99972 * 179.97438 * 15 14 12 41 41 H 1.09001 * 109.87979 * 59.49193 * 20 7 5 42 42 H 1.09001 * 109.87860 * 298.32082 * 20 7 5 43 43 H 1.07995 * 120.06320 * 359.97438 * 22 21 3 44 44 H 1.08004 * 119.94561 * 180.31828 * 23 22 21 45 45 H 1.08999 * 109.47555 * 179.97438 * 26 25 24 46 46 H 1.09001 * 109.47242 * 299.99630 * 26 25 24 47 47 H 1.09002 * 109.47368 * 59.99896 * 26 25 24 48 48 H 1.08000 * 119.94509 * 180.02562 * 27 24 23 49 49 H 1.07997 * 120.06481 * 179.97438 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.3535 2.0230 1.1645 5 6 2.8406 3.4021 1.1647 6 8 2.9568 4.0066 0.1147 7 7 3.1607 4.0036 2.3274 8 6 3.0676 3.3916 3.6655 9 6 2.9276 4.5909 4.6438 10 6 3.8609 5.6376 3.9798 11 8 5.2214 5.4116 4.3546 12 6 3.4356 7.0371 4.3422 13 1 2.6061 7.1919 5.0164 14 6 4.1052 8.1199 3.8130 15 7 5.1154 7.9314 2.9924 16 14 3.5775 9.8547 4.2616 17 1 3.6941 10.0435 5.7300 18 1 4.4507 10.8335 3.5654 19 1 2.1676 10.0665 3.8458 20 6 3.6604 5.3788 2.4717 21 6 2.1728 2.1508 -1.2682 22 6 1.0410 2.4486 -2.0360 23 6 1.1772 3.1383 -3.2195 24 6 2.4374 3.5277 -3.6589 25 8 2.5670 4.2021 -4.8297 26 6 1.3677 4.4763 -5.5566 27 6 3.5653 3.2290 -2.9031 28 6 3.4392 2.5459 -1.7145 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8932 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 2.2500 1.4868 2.0963 35 1 2.1906 2.7474 3.7278 36 1 3.9713 2.8235 3.8866 37 1 3.2811 4.3291 5.6411 38 1 1.8991 4.9501 4.6772 39 1 5.8500 6.0160 3.9368 40 1 5.5863 8.6933 2.6198 41 1 2.9316 6.0821 2.0689 42 1 4.6102 5.4849 1.9477 43 1 0.0621 2.1420 -1.6982 44 1 0.3040 3.3731 -3.8103 45 1 1.6122 5.0190 -6.4697 46 1 0.8751 3.5381 -5.8121 47 1 0.7007 5.0813 -4.9424 48 1 4.5420 3.5340 -3.2485 49 1 4.3160 2.3139 -1.1282 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844015052.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:12:25 Heat of formation + Delta-G solvation = -95.686949 kcal Electronic energy + Delta-G solvation = -30776.604169 eV Core-core repulsion = 26668.626818 eV Total energy + Delta-G solvation = -4107.977350 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.35786 -40.74657 -39.37674 -38.23926 -36.18704 -36.01623 -34.21961 -32.19294 -31.95455 -31.60957 -30.25455 -29.45822 -28.17399 -27.18110 -25.31645 -23.98789 -23.53042 -23.25153 -21.53484 -20.93238 -19.52254 -19.15601 -18.98960 -18.21696 -17.34817 -17.07157 -16.70536 -16.64669 -16.48527 -16.15540 -15.70049 -15.21715 -15.06079 -14.83673 -14.73199 -14.65129 -14.60162 -14.40367 -14.17347 -13.78748 -13.55516 -13.48287 -13.28356 -13.24435 -12.98299 -12.84381 -12.68289 -12.51871 -12.34679 -12.31243 -12.16509 -12.10820 -11.92120 -11.83041 -11.54611 -11.18315 -10.81253 -10.64278 -10.29369 -10.20747 -9.84625 -9.41580 -8.78837 -8.28388 -6.44586 0.02483 0.48915 0.70687 1.39951 1.40553 1.48776 2.21752 2.36513 2.38462 2.39753 2.82869 2.98232 3.66267 3.67360 3.81578 3.85343 3.95103 4.09742 4.17986 4.26037 4.29808 4.32903 4.36433 4.42447 4.44813 4.50178 4.57717 4.66119 4.68137 4.69173 4.72179 4.82052 4.96834 5.02828 5.06315 5.13406 5.13618 5.15523 5.26929 5.33253 5.35945 5.41570 5.47655 5.55457 5.56492 5.68186 5.74085 5.84514 6.04196 6.47265 6.61634 6.79190 7.26540 7.33456 7.34132 8.77365 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010441 B = 0.003286 C = 0.002703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2681.189630 B = 8519.809309 C =10357.160650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.084 4.084 3 C 0.018 3.982 4 C -0.213 4.213 5 C 0.534 3.466 6 O -0.577 6.577 7 N -0.615 5.615 8 C 0.107 3.893 9 C -0.113 4.113 10 C 0.232 3.768 11 O -0.588 6.588 12 C -0.560 4.560 13 H 0.067 0.933 14 C 0.025 3.975 15 N -0.917 5.917 16 Si 0.963 3.037 17 H -0.266 1.266 18 H -0.284 1.284 19 H -0.273 1.273 20 C 0.128 3.872 21 C -0.094 4.094 22 C -0.072 4.072 23 C -0.217 4.217 24 C 0.116 3.884 25 O -0.340 6.340 26 C 0.019 3.981 27 C -0.179 4.179 28 C -0.023 4.023 29 H 0.081 0.919 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.161 0.839 35 H 0.107 0.893 36 H 0.072 0.928 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.376 0.624 40 H 0.270 0.730 41 H 0.026 0.974 42 H 0.024 0.976 43 H 0.146 0.854 44 H 0.151 0.849 45 H 0.119 0.881 46 H 0.072 0.928 47 H 0.056 0.944 48 H 0.121 0.879 49 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.863 -17.063 -9.564 22.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.122 4.122 3 C 0.016 3.984 4 C -0.234 4.234 5 C 0.327 3.673 6 O -0.460 6.460 7 N -0.348 5.348 8 C -0.015 4.015 9 C -0.150 4.150 10 C 0.191 3.809 11 O -0.397 6.397 12 C -0.598 4.598 13 H 0.085 0.915 14 C -0.176 4.176 15 N -0.557 5.557 16 Si 0.788 3.212 17 H -0.190 1.190 18 H -0.210 1.210 19 H -0.199 1.199 20 C 0.004 3.996 21 C -0.094 4.094 22 C -0.090 4.090 23 C -0.236 4.236 24 C 0.071 3.929 25 O -0.254 6.254 26 C -0.075 4.075 27 C -0.197 4.197 28 C -0.042 4.042 29 H 0.100 0.900 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.104 0.896 33 H 0.116 0.884 34 H 0.179 0.821 35 H 0.126 0.874 36 H 0.090 0.910 37 H 0.109 0.891 38 H 0.100 0.900 39 H 0.225 0.775 40 H 0.079 0.921 41 H 0.044 0.956 42 H 0.043 0.957 43 H 0.164 0.836 44 H 0.169 0.831 45 H 0.137 0.863 46 H 0.090 0.910 47 H 0.075 0.925 48 H 0.139 0.861 49 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -10.786 -17.084 -10.004 22.545 hybrid contribution 0.544 2.295 -0.291 2.377 sum -10.242 -14.788 -10.295 20.726 Atomic orbital electron populations 1.21806 0.93037 1.03308 1.02334 1.20778 0.97363 0.89246 1.04769 1.21391 0.90478 0.96095 0.90418 1.22885 1.07364 0.92985 1.00119 1.18889 0.77975 0.88542 0.81897 1.90854 1.56284 1.67745 1.31078 1.48799 1.63847 1.14785 1.07345 1.22543 1.02634 0.95922 0.80418 1.22831 0.99164 0.94116 0.98934 1.19723 0.80513 0.93179 0.87435 1.86072 1.18823 1.61545 1.73222 1.21854 1.17172 0.91606 1.29160 0.91483 1.25827 0.94538 1.03520 0.93676 1.69755 1.21695 1.32812 1.31412 0.85535 0.78162 0.78772 0.78757 1.19029 1.20972 1.19853 1.22362 0.95751 0.81037 1.00463 1.18822 0.93404 1.01906 0.95265 1.21200 0.98168 0.96564 0.93042 1.21282 0.96191 1.05861 1.00234 1.19242 0.94311 0.93021 0.86340 1.85983 1.36160 1.71186 1.32094 1.23332 0.85812 1.02009 0.96355 1.20335 0.97694 1.05012 0.96687 1.20765 0.96876 0.93631 0.92899 0.89984 0.92373 0.92588 0.89626 0.88369 0.82139 0.87445 0.91012 0.89142 0.89964 0.77478 0.92119 0.95591 0.95737 0.83620 0.83148 0.86328 0.90986 0.92493 0.86123 0.87354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.84 71.98 0.71 -1.11 16 2 C -0.08 -1.26 6.08 29.84 0.18 -1.08 16 3 C 0.02 0.44 4.75 -18.32 -0.09 0.36 16 4 C -0.21 -5.90 9.11 23.61 0.21 -5.68 16 5 C 0.53 21.19 7.65 86.33 0.66 21.85 16 6 O -0.58 -27.15 12.52 -4.41 -0.06 -27.21 16 7 N -0.62 -25.59 3.33 -815.99 -2.71 -28.30 16 8 C 0.11 3.50 6.52 87.02 0.57 4.07 16 9 C -0.11 -4.33 6.26 32.16 0.20 -4.13 16 10 C 0.23 11.48 0.85 -10.35 -0.01 11.47 16 11 O -0.59 -30.53 13.07 -148.98 -1.95 -32.47 16 12 C -0.56 -30.05 8.11 25.60 0.21 -29.84 16 13 H 0.07 3.48 7.77 -2.91 -0.02 3.46 16 14 C 0.03 1.35 5.27 84.65 0.45 1.80 16 15 N -0.92 -51.45 10.96 21.45 0.24 -51.22 16 16 Si 0.96 42.99 29.54 68.60 2.03 45.01 16 17 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 18 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 19 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 20 C 0.13 6.55 5.38 86.73 0.47 7.02 16 21 C -0.09 -2.76 3.85 -20.14 -0.08 -2.84 16 22 C -0.07 -1.89 9.50 22.55 0.21 -1.68 16 23 C -0.22 -5.73 9.01 22.32 0.20 -5.53 16 24 C 0.12 3.59 6.70 22.65 0.15 3.74 16 25 O -0.34 -9.59 10.48 -90.60 -0.95 -10.54 16 26 C 0.02 0.33 9.81 113.37 1.11 1.44 16 27 C -0.18 -6.06 9.97 22.32 0.22 -5.84 16 28 C -0.02 -0.79 6.94 22.55 0.16 -0.63 16 29 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.06 0.72 6.00 -2.39 -0.01 0.71 16 32 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.10 1.12 8.03 -2.39 -0.02 1.10 16 34 H 0.16 3.26 6.83 -2.91 -0.02 3.24 16 35 H 0.11 2.57 7.14 -2.39 -0.02 2.55 16 36 H 0.07 2.27 8.14 -2.38 -0.02 2.25 16 37 H 0.09 3.20 8.14 -2.39 -0.02 3.18 16 38 H 0.08 3.03 8.04 -2.39 -0.02 3.01 16 39 H 0.38 20.52 7.23 -74.06 -0.54 19.99 16 40 H 0.27 14.54 8.31 -92.71 -0.77 13.77 16 41 H 0.03 1.48 7.81 -2.39 -0.02 1.46 16 42 H 0.02 1.41 8.00 -2.39 -0.02 1.39 16 43 H 0.15 2.98 6.19 -2.91 -0.02 2.96 16 44 H 0.15 2.97 6.27 -2.91 -0.02 2.95 16 45 H 0.12 1.49 8.14 -2.39 -0.02 1.47 16 46 H 0.07 0.97 7.65 -2.39 -0.02 0.95 16 47 H 0.06 0.96 7.65 -2.39 -0.02 0.94 16 48 H 0.12 3.97 8.06 -2.91 -0.02 3.95 16 49 H 0.11 3.74 8.05 -2.91 -0.02 3.71 16 Total: -1.00 -72.14 394.69 2.56 -69.58 By element: Atomic # 1 Polarization: 41.34 SS G_CDS: 0.43 Total: 41.77 kcal Atomic # 6 Polarization: -12.16 SS G_CDS: 5.54 Total: -6.62 kcal Atomic # 7 Polarization: -77.04 SS G_CDS: -2.48 Total: -79.52 kcal Atomic # 8 Polarization: -67.26 SS G_CDS: -2.95 Total: -70.22 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.01 kcal Total: -72.14 2.56 -69.58 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844015052.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.112 kcal (2) G-P(sol) polarization free energy of solvation -72.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds