Wall clock time and date at job start Wed Apr 1 2020 03:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47321 * 2 1 4 4 N 1.46505 * 109.46887 * 119.99645 * 2 1 3 5 5 C 1.46768 * 124.34973 * 120.00197 * 4 2 1 6 6 C 1.54472 * 105.47471 * 163.00386 * 5 4 2 7 7 H 1.09007 * 110.96986 * 267.26195 * 6 5 4 8 8 C 1.52999 * 110.97120 * 143.53389 * 6 5 4 9 9 O 1.45205 * 109.47143 * 174.99955 * 8 6 5 10 10 C 1.34227 * 116.99794 * 180.02562 * 9 8 6 11 11 O 1.20826 * 119.99847 * 359.97438 * 10 9 8 12 12 C 1.50704 * 119.99889 * 180.02562 * 10 9 8 13 13 C 1.50699 * 109.46834 * 179.97438 * 12 10 9 14 14 C 1.37632 * 120.13057 * 264.99253 * 13 12 10 15 15 C 1.38608 * 120.25329 * 179.70320 * 14 13 12 16 16 C 1.38663 * 120.50171 * 0.30095 * 15 14 13 17 17 C 1.37599 * 120.24435 * 359.97438 * 16 15 14 18 18 C 1.40708 * 120.12904 * 85.24383 * 13 12 10 19 19 C 1.41393 * 120.24322 * 0.02562 * 18 13 12 20 20 H 1.08007 * 120.00209 * 334.28995 * 19 18 13 21 21 C 1.39939 * 120.00101 * 154.28839 * 19 18 13 22 22 N 1.30828 * 120.00083 * 343.69689 * 21 19 18 23 23 Si 1.86806 * 120.00187 * 163.69313 * 21 19 18 24 24 H 1.48494 * 109.47064 * 90.00282 * 23 21 19 25 25 H 1.48498 * 109.46914 * 210.00451 * 23 21 19 26 26 H 1.48502 * 109.46853 * 329.99784 * 23 21 19 27 27 C 1.54634 * 101.76670 * 25.41323 * 6 5 4 28 28 C 1.34417 * 124.35249 * 300.02532 * 4 2 1 29 29 O 1.21282 * 124.93747 * 0.38457 * 28 4 2 30 30 H 1.08998 * 109.47002 * 299.99836 * 1 2 3 31 31 H 1.09002 * 109.46886 * 60.00612 * 1 2 3 32 32 H 1.09001 * 109.47107 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47566 * 239.99405 * 2 1 3 34 34 H 1.08997 * 109.47253 * 179.97438 * 3 2 1 35 35 H 1.09002 * 109.46640 * 299.99538 * 3 2 1 36 36 H 1.08998 * 109.47286 * 59.99234 * 3 2 1 37 37 H 1.09004 * 110.24269 * 44.00154 * 5 4 2 38 38 H 1.09000 * 110.24528 * 282.00836 * 5 4 2 39 39 H 1.08997 * 109.47119 * 55.00075 * 8 6 5 40 40 H 1.08997 * 109.47029 * 295.00073 * 8 6 5 41 41 H 1.08992 * 109.47332 * 59.99328 * 12 10 9 42 42 H 1.08998 * 109.46774 * 299.99068 * 12 10 9 43 43 H 1.08010 * 119.87603 * 359.97438 * 14 13 12 44 44 H 1.08004 * 119.75647 * 180.27691 * 15 14 13 45 45 H 1.08000 * 119.87590 * 179.97438 * 16 15 14 46 46 H 1.07997 * 120.12318 * 179.97438 * 17 16 15 47 47 H 0.96996 * 119.99685 * 180.02562 * 22 21 19 48 48 H 1.08997 * 110.48142 * 93.88016 * 27 6 5 49 49 H 1.08991 * 110.48933 * 216.52342 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 2.8656 -1.8888 1.1729 6 6 3.4718 -1.9925 2.5899 7 1 4.4400 -1.4937 2.6375 8 6 3.5894 -3.4532 3.0297 9 8 4.2691 -3.5197 4.3111 10 6 4.4543 -4.7394 4.8400 11 8 4.0611 -5.7189 4.2519 12 6 5.1517 -4.8869 6.1678 13 6 5.2304 -6.3465 6.5343 14 6 4.2722 -6.9072 7.3478 15 6 4.3387 -8.2508 7.6816 16 6 5.3722 -9.0438 7.2065 17 6 6.3443 -8.5033 6.3963 18 6 6.2867 -7.1403 6.0506 19 6 7.2800 -6.5740 5.2189 20 1 7.0518 -5.7045 4.6202 21 6 8.5590 -7.1400 5.1714 22 7 8.9408 -7.9728 6.1053 23 14 9.7210 -6.7065 3.7745 24 1 10.5306 -5.5210 4.1540 25 1 10.6220 -7.8558 3.5055 26 1 8.9339 -6.3983 2.5535 27 6 2.4196 -1.2420 3.4389 28 6 1.7475 -0.3085 2.4562 29 8 1.0640 0.6458 2.7609 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9562 -0.8901 36 1 1.6766 1.9564 0.8899 37 1 3.6566 -1.7769 0.4314 38 1 2.2646 -2.7715 0.9542 39 1 4.1590 -4.0115 2.2868 40 1 2.5933 -3.8855 3.1239 41 1 4.5923 -4.3499 6.9337 42 1 6.1584 -4.4750 6.0971 43 1 3.4629 -6.2988 7.7241 44 1 3.5799 -8.6835 8.3170 45 1 5.4143 -10.0895 7.4732 46 1 7.1486 -9.1225 6.0277 47 1 9.8274 -8.3648 6.0725 48 1 1.6959 -1.9423 3.8558 49 1 2.9044 -0.6749 4.2334 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000847761176.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:39:51 Heat of formation + Delta-G solvation = -113.093257 kcal Electronic energy + Delta-G solvation = -29763.493844 eV Core-core repulsion = 25654.761699 eV Total energy + Delta-G solvation = -4108.732144 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.92628 -39.89820 -37.72968 -36.86753 -36.12257 -35.17582 -33.69067 -31.93679 -31.06582 -29.53357 -28.49255 -27.52075 -27.29629 -25.71121 -24.95640 -22.74112 -21.38127 -21.04610 -20.95635 -19.39907 -19.10900 -17.33265 -17.24100 -16.94346 -16.76335 -16.07742 -15.73348 -15.42211 -15.16669 -14.55566 -14.45849 -14.25746 -14.04724 -13.92818 -13.68336 -13.63140 -13.17046 -13.00200 -12.67974 -12.59984 -12.43412 -12.25339 -12.13736 -11.80187 -11.74072 -11.62268 -11.61328 -11.43487 -11.23177 -11.15243 -11.11481 -11.02688 -10.78381 -10.45795 -10.35567 -9.80992 -9.76812 -9.55322 -9.45105 -9.21561 -9.02315 -7.40263 -7.37671 -6.80337 -4.42160 2.38572 2.52472 2.70840 2.84380 2.89732 3.03308 3.07359 3.21861 3.27209 3.88669 4.03266 4.15404 4.44780 4.52349 4.60735 4.68098 4.72483 4.84816 5.03261 5.11507 5.20062 5.29136 5.30605 5.34470 5.40397 5.46512 5.50401 5.52582 5.66515 5.71188 5.81356 5.86513 5.91977 5.93561 6.06055 6.22966 6.33898 6.36936 6.45303 6.69745 6.85367 6.89488 7.01896 7.22617 7.34873 7.57241 7.84600 7.96260 7.98277 8.06532 8.23608 8.40528 8.57845 8.83650 8.93479 10.13746 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014379 B = 0.002367 C = 0.002126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.831450 B =11828.846670 C =13165.984699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.152 3.848 3 C -0.168 4.168 4 N -0.618 5.618 5 C 0.110 3.890 6 C -0.099 4.099 7 H 0.105 0.895 8 C 0.076 3.924 9 O -0.365 6.365 10 C 0.460 3.540 11 O -0.492 6.492 12 C -0.041 4.041 13 C -0.196 4.196 14 C -0.076 4.076 15 C -0.240 4.240 16 C -0.104 4.104 17 C -0.159 4.159 18 C 0.130 3.870 19 C -0.458 4.458 20 H 0.074 0.926 21 C 0.077 3.923 22 N -0.792 5.792 23 Si 0.903 3.097 24 H -0.269 1.269 25 H -0.275 1.275 26 H -0.261 1.261 27 C -0.150 4.150 28 C 0.520 3.480 29 O -0.530 6.530 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.056 0.944 33 H 0.088 0.912 34 H 0.057 0.943 35 H 0.066 0.934 36 H 0.071 0.929 37 H 0.085 0.915 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.089 0.911 42 H 0.108 0.892 43 H 0.087 0.913 44 H 0.087 0.913 45 H 0.087 0.913 46 H 0.118 0.882 47 H 0.281 0.719 48 H 0.106 0.894 49 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.349 12.847 -10.687 18.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.050 3.950 3 C -0.226 4.226 4 N -0.353 5.353 5 C -0.013 4.013 6 C -0.118 4.118 7 H 0.123 0.877 8 C 0.001 3.999 9 O -0.284 6.284 10 C 0.302 3.698 11 O -0.376 6.376 12 C -0.078 4.078 13 C -0.198 4.198 14 C -0.095 4.095 15 C -0.260 4.260 16 C -0.122 4.122 17 C -0.178 4.178 18 C 0.128 3.872 19 C -0.487 4.487 20 H 0.092 0.908 21 C -0.141 4.141 22 N -0.417 5.417 23 Si 0.728 3.272 24 H -0.194 1.194 25 H -0.200 1.200 26 H -0.185 1.185 27 C -0.190 4.190 28 C 0.309 3.691 29 O -0.407 6.407 30 H 0.091 0.909 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.106 0.894 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.103 0.897 38 H 0.095 0.905 39 H 0.093 0.907 40 H 0.089 0.911 41 H 0.107 0.893 42 H 0.126 0.874 43 H 0.105 0.895 44 H 0.105 0.895 45 H 0.106 0.894 46 H 0.136 0.864 47 H 0.092 0.908 48 H 0.124 0.876 49 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -8.665 12.954 -10.737 18.926 hybrid contribution 0.602 -0.144 -0.793 1.006 sum -8.063 12.810 -11.530 19.027 Atomic orbital electron populations 1.22189 0.94664 1.02443 1.03330 1.20947 0.94527 0.93129 0.86404 1.22185 1.01335 0.95756 1.03310 1.48469 1.51593 1.28967 1.06308 1.22029 0.94204 0.87931 0.97171 1.22120 1.00256 0.95702 0.93698 0.87689 1.22786 0.97726 0.94882 0.84510 1.86525 1.71797 1.34446 1.35592 1.24519 0.76886 0.80023 0.88353 1.90648 1.46381 1.39207 1.61406 1.19986 1.01129 0.97526 0.89197 1.19042 1.01720 0.92270 1.06739 1.20324 0.96494 0.94686 0.97948 1.20325 1.01677 0.94602 1.09350 1.20707 0.95382 0.97466 0.98659 1.21302 0.99152 0.95356 1.01977 1.17352 0.90103 0.90948 0.88821 1.19468 0.94664 1.12305 1.22264 0.90813 1.25890 0.99071 0.93515 0.95581 1.69814 1.19513 1.23367 1.28977 0.86384 0.79797 0.78997 0.82048 1.19378 1.20031 1.18522 1.22462 0.98930 0.99165 0.98393 1.20939 0.79896 0.84568 0.83726 1.90688 1.39490 1.28983 1.81529 0.90933 0.91471 0.92452 0.89423 0.92422 0.91479 0.90963 0.89680 0.90535 0.90667 0.91101 0.89316 0.87403 0.89530 0.89500 0.89449 0.86442 0.90817 0.87585 0.87381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.33 9.20 37.16 0.34 -0.99 16 2 C 0.15 1.17 3.48 -67.93 -0.24 0.94 16 3 C -0.17 -1.31 9.20 37.16 0.34 -0.97 16 4 N -0.62 -5.57 2.83 -164.84 -0.47 -6.04 16 5 C 0.11 0.80 6.87 -3.12 -0.02 0.78 16 6 C -0.10 -0.88 3.42 -88.99 -0.30 -1.18 16 7 H 0.10 0.90 8.14 -51.92 -0.42 0.47 16 8 C 0.08 0.89 4.76 37.16 0.18 1.07 16 9 O -0.37 -5.52 10.19 -39.25 -0.40 -5.92 16 10 C 0.46 8.65 7.61 36.01 0.27 8.93 16 11 O -0.49 -10.88 15.78 -18.75 -0.30 -11.18 16 12 C -0.04 -0.78 5.30 -29.03 -0.15 -0.94 16 13 C -0.20 -4.55 4.43 -103.91 -0.46 -5.01 16 14 C -0.08 -1.70 9.66 -39.67 -0.38 -2.08 16 15 C -0.24 -5.41 10.05 -39.29 -0.39 -5.81 16 16 C -0.10 -2.45 10.02 -39.66 -0.40 -2.85 16 17 C -0.16 -4.11 8.68 -38.87 -0.34 -4.45 16 18 C 0.13 3.37 5.56 -106.82 -0.59 2.77 16 19 C -0.46 -11.61 8.15 -37.75 -0.31 -11.92 16 20 H 0.07 1.81 6.68 -52.48 -0.35 1.46 16 21 C 0.08 1.88 5.16 -17.34 -0.09 1.79 16 22 N -0.79 -19.85 10.97 55.55 0.61 -19.24 16 23 Si 0.90 18.17 29.59 -169.99 -5.03 13.14 16 24 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 25 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 26 H -0.26 -5.28 7.11 56.52 0.40 -4.87 16 27 C -0.15 -1.46 6.39 -26.74 -0.17 -1.63 16 28 C 0.52 5.92 7.41 -10.86 -0.08 5.84 16 29 O -0.53 -7.76 15.12 5.56 0.08 -7.68 16 30 H 0.07 0.75 6.77 -51.93 -0.35 0.40 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.09 0.50 8.07 -51.93 -0.42 0.09 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.07 0.74 6.80 -51.93 -0.35 0.39 16 37 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.08 0.51 7.89 -51.93 -0.41 0.10 16 39 H 0.08 0.90 8.13 -51.93 -0.42 0.47 16 40 H 0.07 0.82 7.92 -51.93 -0.41 0.41 16 41 H 0.09 1.42 8.05 -51.93 -0.42 1.00 16 42 H 0.11 2.03 7.04 -51.93 -0.37 1.67 16 43 H 0.09 1.67 8.06 -52.48 -0.42 1.25 16 44 H 0.09 1.73 8.06 -52.48 -0.42 1.31 16 45 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 46 H 0.12 3.13 6.22 -52.49 -0.33 2.80 16 47 H 0.28 6.42 8.30 -40.82 -0.34 6.08 16 48 H 0.11 1.02 7.75 -51.93 -0.40 0.61 16 49 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 401.92 15.07 6.06 6.06 Total: -1.00 -30.88 401.92 -9.83 -40.71 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -7.59 Total: 5.84 kcal Atomic # 6 Polarization: -12.91 SS G_CDS: -2.80 Total: -15.70 kcal Atomic # 7 Polarization: -25.42 SS G_CDS: 0.14 Total: -25.27 kcal Atomic # 8 Polarization: -24.16 SS G_CDS: -0.61 Total: -24.78 kcal Atomic # 14 Polarization: 18.17 SS G_CDS: -5.03 Total: 13.14 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -30.88 -9.83 -40.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847761176.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.380 kcal (2) G-P(sol) polarization free energy of solvation -30.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds