Wall clock time and date at job start Wed Apr 1 2020 03:39:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47321 * 2 1 4 4 N 1.46505 * 109.46887 * 119.99645 * 2 1 3 5 5 C 1.46768 * 124.34973 * 120.00197 * 4 2 1 6 6 C 1.54472 * 105.47471 * 163.00386 * 5 4 2 7 7 H 1.09007 * 110.96986 * 267.26195 * 6 5 4 8 8 C 1.52999 * 110.97120 * 143.53389 * 6 5 4 9 9 O 1.45205 * 109.47143 * 174.99955 * 8 6 5 10 10 C 1.34227 * 116.99794 * 180.02562 * 9 8 6 11 11 O 1.20826 * 119.99847 * 359.97438 * 10 9 8 12 12 C 1.50704 * 119.99889 * 180.02562 * 10 9 8 13 13 C 1.50699 * 109.46834 * 179.97438 * 12 10 9 14 14 C 1.37632 * 120.13057 * 264.99253 * 13 12 10 15 15 C 1.38608 * 120.25329 * 179.70320 * 14 13 12 16 16 C 1.38663 * 120.50171 * 0.30095 * 15 14 13 17 17 C 1.37599 * 120.24435 * 359.97438 * 16 15 14 18 18 C 1.40708 * 120.12904 * 85.24383 * 13 12 10 19 19 C 1.41393 * 120.24322 * 0.02562 * 18 13 12 20 20 H 1.08007 * 120.00209 * 334.28995 * 19 18 13 21 21 C 1.39939 * 120.00101 * 154.28839 * 19 18 13 22 22 N 1.30828 * 120.00083 * 343.69689 * 21 19 18 23 23 Si 1.86806 * 120.00187 * 163.69313 * 21 19 18 24 24 H 1.48494 * 109.47064 * 90.00282 * 23 21 19 25 25 H 1.48498 * 109.46914 * 210.00451 * 23 21 19 26 26 H 1.48502 * 109.46853 * 329.99784 * 23 21 19 27 27 C 1.54634 * 101.76670 * 25.41323 * 6 5 4 28 28 C 1.34417 * 124.35249 * 300.02532 * 4 2 1 29 29 O 1.21282 * 124.93747 * 0.38457 * 28 4 2 30 30 H 1.08998 * 109.47002 * 299.99836 * 1 2 3 31 31 H 1.09002 * 109.46886 * 60.00612 * 1 2 3 32 32 H 1.09001 * 109.47107 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47566 * 239.99405 * 2 1 3 34 34 H 1.08997 * 109.47253 * 179.97438 * 3 2 1 35 35 H 1.09002 * 109.46640 * 299.99538 * 3 2 1 36 36 H 1.08998 * 109.47286 * 59.99234 * 3 2 1 37 37 H 1.09004 * 110.24269 * 44.00154 * 5 4 2 38 38 H 1.09000 * 110.24528 * 282.00836 * 5 4 2 39 39 H 1.08997 * 109.47119 * 55.00075 * 8 6 5 40 40 H 1.08997 * 109.47029 * 295.00073 * 8 6 5 41 41 H 1.08992 * 109.47332 * 59.99328 * 12 10 9 42 42 H 1.08998 * 109.46774 * 299.99068 * 12 10 9 43 43 H 1.08010 * 119.87603 * 359.97438 * 14 13 12 44 44 H 1.08004 * 119.75647 * 180.27691 * 15 14 13 45 45 H 1.08000 * 119.87590 * 179.97438 * 16 15 14 46 46 H 1.07997 * 120.12318 * 179.97438 * 17 16 15 47 47 H 0.96996 * 119.99685 * 180.02562 * 22 21 19 48 48 H 1.08997 * 110.48142 * 93.88016 * 27 6 5 49 49 H 1.08991 * 110.48933 * 216.52342 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 2.8656 -1.8888 1.1729 6 6 3.4718 -1.9925 2.5899 7 1 4.4400 -1.4937 2.6375 8 6 3.5894 -3.4532 3.0297 9 8 4.2691 -3.5197 4.3111 10 6 4.4543 -4.7394 4.8400 11 8 4.0611 -5.7189 4.2519 12 6 5.1517 -4.8869 6.1678 13 6 5.2304 -6.3465 6.5343 14 6 4.2722 -6.9072 7.3478 15 6 4.3387 -8.2508 7.6816 16 6 5.3722 -9.0438 7.2065 17 6 6.3443 -8.5033 6.3963 18 6 6.2867 -7.1403 6.0506 19 6 7.2800 -6.5740 5.2189 20 1 7.0518 -5.7045 4.6202 21 6 8.5590 -7.1400 5.1714 22 7 8.9408 -7.9728 6.1053 23 14 9.7210 -6.7065 3.7745 24 1 10.5306 -5.5210 4.1540 25 1 10.6220 -7.8558 3.5055 26 1 8.9339 -6.3983 2.5535 27 6 2.4196 -1.2420 3.4389 28 6 1.7475 -0.3085 2.4562 29 8 1.0640 0.6458 2.7609 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9562 -0.8901 36 1 1.6766 1.9564 0.8899 37 1 3.6566 -1.7769 0.4314 38 1 2.2646 -2.7715 0.9542 39 1 4.1590 -4.0115 2.2868 40 1 2.5933 -3.8855 3.1239 41 1 4.5923 -4.3499 6.9337 42 1 6.1584 -4.4750 6.0971 43 1 3.4629 -6.2988 7.7241 44 1 3.5799 -8.6835 8.3170 45 1 5.4143 -10.0895 7.4732 46 1 7.1486 -9.1225 6.0277 47 1 9.8274 -8.3648 6.0725 48 1 1.6959 -1.9423 3.8558 49 1 2.9044 -0.6749 4.2334 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000847761176.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:39:49 Heat of formation + Delta-G solvation = -127.843466 kcal Electronic energy + Delta-G solvation = -29764.133461 eV Core-core repulsion = 25654.761699 eV Total energy + Delta-G solvation = -4109.371761 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.78714 -41.24321 -39.41318 -37.92501 -37.22510 -36.05262 -35.50530 -33.57402 -31.91678 -31.35630 -29.38772 -28.76745 -28.13707 -27.09067 -26.34851 -23.43219 -22.89670 -22.70937 -21.89105 -21.01720 -19.92503 -19.06902 -18.57613 -17.87101 -17.67134 -17.44266 -17.01149 -16.76588 -16.23214 -16.15345 -15.64643 -15.42758 -15.17277 -14.93722 -14.72541 -14.63310 -14.36849 -14.29791 -13.78879 -13.69202 -13.57876 -13.40603 -13.26834 -12.98830 -12.91730 -12.81449 -12.76818 -12.71111 -12.52692 -12.47452 -12.25462 -12.11939 -12.11139 -11.95076 -11.51107 -11.33876 -11.31810 -11.22216 -11.01468 -10.64282 -9.74570 -9.23879 -9.20674 -8.60067 -6.30757 0.93743 1.10829 1.38919 1.42469 1.49761 1.53197 1.56083 1.76783 2.09911 2.21350 2.78817 3.25727 3.38632 3.61535 3.81987 3.84300 3.99851 4.09329 4.12015 4.22476 4.29162 4.38085 4.40017 4.46423 4.54475 4.57125 4.59468 4.61107 4.70664 4.71190 4.75458 4.81573 4.85646 4.88874 4.91534 5.02099 5.09500 5.19498 5.21999 5.28580 5.36233 5.50685 5.53884 5.67089 5.76867 6.03035 6.10811 6.14948 6.21698 6.40311 6.72110 6.97092 6.99573 7.09530 7.14137 8.36379 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014379 B = 0.002367 C = 0.002126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.831450 B =11828.846670 C =13165.984699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.145 3.855 3 C -0.163 4.163 4 N -0.613 5.613 5 C 0.111 3.889 6 C -0.086 4.086 7 H 0.113 0.887 8 C 0.072 3.928 9 O -0.357 6.357 10 C 0.469 3.531 11 O -0.531 6.531 12 C -0.043 4.043 13 C -0.201 4.201 14 C -0.085 4.085 15 C -0.244 4.244 16 C -0.113 4.113 17 C -0.193 4.193 18 C 0.098 3.902 19 C -0.483 4.483 20 H 0.074 0.926 21 C 0.036 3.964 22 N -0.824 5.824 23 Si 0.972 3.028 24 H -0.257 1.257 25 H -0.270 1.270 26 H -0.262 1.262 27 C -0.148 4.148 28 C 0.513 3.487 29 O -0.571 6.571 30 H 0.041 0.959 31 H 0.086 0.914 32 H 0.058 0.942 33 H 0.118 0.882 34 H 0.060 0.940 35 H 0.085 0.915 36 H 0.041 0.959 37 H 0.111 0.889 38 H 0.088 0.912 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.123 0.877 42 H 0.108 0.892 43 H 0.120 0.880 44 H 0.116 0.884 45 H 0.105 0.895 46 H 0.098 0.902 47 H 0.287 0.713 48 H 0.107 0.893 49 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.529 13.863 -12.158 20.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.043 3.957 3 C -0.221 4.221 4 N -0.347 5.347 5 C -0.011 4.011 6 C -0.105 4.105 7 H 0.131 0.869 8 C -0.002 4.002 9 O -0.275 6.275 10 C 0.313 3.687 11 O -0.419 6.419 12 C -0.080 4.080 13 C -0.203 4.203 14 C -0.103 4.103 15 C -0.263 4.263 16 C -0.132 4.132 17 C -0.212 4.212 18 C 0.096 3.904 19 C -0.512 4.512 20 H 0.092 0.908 21 C -0.179 4.179 22 N -0.450 5.450 23 Si 0.793 3.207 24 H -0.181 1.181 25 H -0.195 1.195 26 H -0.186 1.186 27 C -0.188 4.188 28 C 0.302 3.698 29 O -0.451 6.451 30 H 0.060 0.940 31 H 0.105 0.895 32 H 0.077 0.923 33 H 0.136 0.864 34 H 0.079 0.921 35 H 0.104 0.896 36 H 0.060 0.940 37 H 0.129 0.871 38 H 0.106 0.894 39 H 0.095 0.905 40 H 0.092 0.908 41 H 0.141 0.859 42 H 0.126 0.874 43 H 0.138 0.862 44 H 0.134 0.866 45 H 0.124 0.876 46 H 0.116 0.884 47 H 0.097 0.903 48 H 0.125 0.875 49 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -8.840 13.978 -12.218 20.563 hybrid contribution 0.537 -0.434 -0.309 0.756 sum -8.303 13.544 -12.527 20.231 Atomic orbital electron populations 1.22148 0.95005 1.02300 1.02769 1.21190 0.94343 0.93304 0.86820 1.22140 1.01453 0.95803 1.02725 1.48599 1.50980 1.29101 1.06022 1.22173 0.94788 0.87612 0.96528 1.22030 1.00506 0.93491 0.94491 0.86870 1.23069 0.97460 0.96884 0.82831 1.86487 1.71666 1.32193 1.37105 1.24258 0.76027 0.80392 0.88004 1.90638 1.48237 1.40614 1.62412 1.19995 1.01915 0.95427 0.90685 1.19473 1.00764 0.94183 1.05848 1.20762 0.97031 0.95115 0.97401 1.20733 1.01654 0.94918 1.09018 1.20977 0.95260 0.98705 0.98210 1.21310 0.99970 0.95834 1.04107 1.17744 0.91520 0.91397 0.89776 1.19642 0.95456 1.13015 1.23113 0.90802 1.26697 1.00363 0.93230 0.97587 1.69879 1.20250 1.24382 1.30509 0.85356 0.77639 0.79137 0.78593 1.18108 1.19462 1.18624 1.22455 0.99108 0.98957 0.98318 1.21200 0.79575 0.84229 0.84830 1.90668 1.41401 1.30780 1.82296 0.93981 0.89529 0.92336 0.86367 0.92081 0.89574 0.94022 0.87066 0.89371 0.90497 0.90846 0.85861 0.87434 0.86247 0.86620 0.87645 0.88428 0.90285 0.87512 0.87437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.39 9.20 71.98 0.66 -1.73 16 2 C 0.14 1.91 3.48 44.99 0.16 2.06 16 3 C -0.16 -2.31 9.20 71.98 0.66 -1.64 16 4 N -0.61 -9.85 2.83 -794.03 -2.25 -12.09 16 5 C 0.11 1.28 6.87 86.83 0.60 1.88 16 6 C -0.09 -1.33 3.42 -9.74 -0.03 -1.36 16 7 H 0.11 1.61 8.14 -2.38 -0.02 1.59 16 8 C 0.07 1.54 4.76 71.98 0.34 1.88 16 9 O -0.36 -10.15 10.19 -51.38 -0.52 -10.67 16 10 C 0.47 17.09 7.61 71.24 0.54 17.64 16 11 O -0.53 -23.23 15.78 21.97 0.35 -22.89 16 12 C -0.04 -1.59 5.30 29.10 0.15 -1.43 16 13 C -0.20 -9.24 4.43 -19.40 -0.09 -9.33 16 14 C -0.09 -3.65 9.66 22.21 0.21 -3.43 16 15 C -0.24 -10.67 10.05 22.46 0.23 -10.45 16 16 C -0.11 -5.38 10.02 22.22 0.22 -5.16 16 17 C -0.19 -10.30 8.68 22.73 0.20 -10.11 16 18 C 0.10 5.16 5.56 -21.29 -0.12 5.04 16 19 C -0.48 -24.98 8.15 23.46 0.19 -24.79 16 20 H 0.07 3.67 6.68 -2.91 -0.02 3.65 16 21 C 0.04 1.78 5.16 85.25 0.44 2.22 16 22 N -0.82 -42.46 10.97 21.83 0.24 -42.22 16 23 Si 0.97 37.34 29.59 68.60 2.03 39.37 16 24 H -0.26 -9.29 7.11 99.48 0.71 -8.59 16 25 H -0.27 -10.02 7.11 99.48 0.71 -9.32 16 26 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 27 C -0.15 -2.71 6.39 30.59 0.20 -2.51 16 28 C 0.51 11.34 7.41 87.90 0.65 11.99 16 29 O -0.57 -17.12 15.12 -3.04 -0.05 -17.16 16 30 H 0.04 0.88 6.77 -2.39 -0.02 0.87 16 31 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.12 0.89 8.07 -2.39 -0.02 0.87 16 34 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.04 0.86 6.80 -2.39 -0.02 0.84 16 37 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.09 0.88 7.89 -2.39 -0.02 0.86 16 39 H 0.08 1.68 8.13 -2.39 -0.02 1.66 16 40 H 0.07 1.57 7.92 -2.39 -0.02 1.55 16 41 H 0.12 3.61 8.05 -2.39 -0.02 3.59 16 42 H 0.11 3.97 7.04 -2.39 -0.02 3.96 16 43 H 0.12 4.25 8.06 -2.91 -0.02 4.22 16 44 H 0.12 4.31 8.06 -2.91 -0.02 4.28 16 45 H 0.11 4.45 8.06 -2.91 -0.02 4.43 16 46 H 0.10 5.47 6.22 -2.91 -0.02 5.45 16 47 H 0.29 13.41 8.30 -92.71 -0.77 12.64 16 48 H 0.11 1.93 7.75 -2.39 -0.02 1.91 16 49 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -69.66 401.92 5.96 -63.70 By element: Atomic # 1 Polarization: 30.26 SS G_CDS: 0.94 Total: 31.20 kcal Atomic # 6 Polarization: -34.44 SS G_CDS: 5.22 Total: -29.22 kcal Atomic # 7 Polarization: -52.31 SS G_CDS: -2.01 Total: -54.32 kcal Atomic # 8 Polarization: -50.50 SS G_CDS: -0.22 Total: -50.72 kcal Atomic # 14 Polarization: 37.34 SS G_CDS: 2.03 Total: 39.37 kcal Total: -69.66 5.96 -63.70 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847761176.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.144 kcal (2) G-P(sol) polarization free energy of solvation -69.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds