Wall clock time and date at job start Wed Apr 1 2020 03:25:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34226 * 117.00514 * 2 1 4 4 O 1.20822 * 119.99669 * 359.97438 * 3 2 1 5 5 C 1.50693 * 120.00107 * 179.97438 * 3 2 1 6 6 C 1.53007 * 109.47077 * 179.97438 * 5 3 2 7 7 C 1.52994 * 109.47099 * 60.00078 * 6 5 3 8 8 N 1.46508 * 109.47094 * 179.97438 * 6 5 3 9 9 C 1.34778 * 120.00134 * 303.73143 * 8 6 5 10 10 O 1.21283 * 119.99893 * 354.67506 * 9 8 6 11 11 C 1.50697 * 120.00029 * 174.40011 * 9 8 6 12 12 C 1.50702 * 109.47214 * 180.02562 * 11 9 8 13 13 C 1.37640 * 120.12408 * 265.00171 * 12 11 9 14 14 C 1.38617 * 120.24512 * 179.97438 * 13 12 11 15 15 C 1.38651 * 120.50225 * 0.02562 * 14 13 12 16 16 C 1.37600 * 120.24722 * 0.02562 * 15 14 13 17 17 C 1.40692 * 120.12804 * 84.72102 * 12 11 9 18 18 C 1.41395 * 120.24548 * 0.02562 * 17 12 11 19 19 H 1.08001 * 119.99866 * 325.63531 * 18 17 12 20 20 C 1.39942 * 119.99964 * 145.63721 * 18 17 12 21 21 N 1.30820 * 120.00221 * 358.52038 * 20 18 17 22 22 Si 1.86811 * 119.99880 * 178.52636 * 20 18 17 23 23 H 1.48501 * 109.46879 * 89.99940 * 22 20 18 24 24 H 1.48500 * 109.46749 * 209.99549 * 22 20 18 25 25 H 1.48492 * 109.46945 * 329.99685 * 22 20 18 26 26 C 1.52995 * 109.47211 * 299.99799 * 6 5 3 27 27 C 1.53004 * 117.50171 * 254.37423 * 26 6 5 28 28 C 1.52995 * 117.49922 * 185.71245 * 26 6 5 29 29 H 1.09001 * 109.47536 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47371 * 300.00549 * 1 2 3 31 31 H 1.09002 * 109.46856 * 59.99776 * 1 2 3 32 32 H 1.09006 * 109.47427 * 60.00051 * 5 3 2 33 33 H 1.09004 * 109.47385 * 299.99540 * 5 3 2 34 34 H 1.08996 * 109.47184 * 179.97438 * 7 6 5 35 35 H 1.09000 * 109.46998 * 300.00491 * 7 6 5 36 36 H 1.09004 * 109.47364 * 59.99495 * 7 6 5 37 37 H 0.96997 * 119.99850 * 123.72862 * 8 6 5 38 38 H 1.09000 * 109.46591 * 299.99536 * 11 9 8 39 39 H 1.08991 * 109.47130 * 59.99580 * 11 9 8 40 40 H 1.07999 * 119.87815 * 359.97438 * 13 12 11 41 41 H 1.07994 * 119.74696 * 180.02562 * 14 13 12 42 42 H 1.07995 * 119.87819 * 180.02562 * 15 14 13 43 43 H 1.08001 * 120.12620 * 179.97438 * 16 15 14 44 44 H 0.97006 * 119.99667 * 180.02562 * 21 20 18 45 45 H 1.09004 * 115.54869 * 40.04098 * 26 6 5 46 46 H 1.08992 * 117.49572 * 0.02562 * 27 26 6 47 47 H 1.08997 * 117.49775 * 145.01581 * 27 26 6 48 48 H 1.09002 * 117.49851 * 214.98315 * 28 26 6 49 49 H 1.08996 * 117.49918 * 0.02562 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2092 -0.0005 5 6 3.5663 1.2747 0.0006 6 6 4.0002 2.7419 -0.0002 7 6 3.4527 3.4363 1.2483 8 7 5.4633 2.8185 0.0010 9 6 6.1694 2.2072 0.9728 10 8 5.5931 1.6762 1.8985 11 6 7.6746 2.1782 0.9059 12 6 8.2164 1.4397 2.1026 13 6 8.6081 2.1348 3.2242 14 6 9.1063 1.4580 4.3265 15 6 9.2166 0.0759 4.3131 16 6 8.8321 -0.6393 3.2023 17 6 8.3183 0.0366 2.0799 18 6 7.9140 -0.6884 0.9353 19 1 7.0778 -0.3435 0.3452 20 6 8.5973 -1.8529 0.5672 21 7 9.6281 -2.2548 1.2653 22 14 8.0375 -2.8333 -0.9211 23 1 8.7378 -2.3367 -2.1329 24 1 8.3584 -4.2689 -0.7174 25 1 6.5716 -2.6737 -1.0962 26 6 3.4538 3.4347 -1.2501 27 6 4.4433 3.7465 -2.3747 28 6 3.8904 4.8786 -1.5053 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 3.9564 0.7803 -0.8892 33 1 3.9557 0.7808 0.8909 34 1 3.7622 4.4814 1.2480 35 1 2.3642 3.3792 1.2479 36 1 3.8420 2.9427 2.1388 37 1 5.9238 3.3091 -0.6976 38 1 7.9879 1.6705 -0.0063 39 1 8.0579 3.1984 0.9039 40 1 8.5269 3.2115 3.2454 41 1 9.4109 2.0114 5.2024 42 1 9.6058 -0.4411 5.1777 43 1 8.9193 -1.7158 3.1938 44 1 10.1019 -3.0618 1.0098 45 1 2.4388 3.1579 -1.5352 46 1 5.4834 3.4576 -2.2242 47 1 4.0792 3.6751 -3.3995 48 1 3.1628 5.5518 -1.9587 49 1 4.5673 5.3349 -0.7831 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871236115.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:25:15 Heat of formation + Delta-G solvation = -70.185799 kcal Electronic energy + Delta-G solvation = -31481.162038 eV Core-core repulsion = 27374.290501 eV Total energy + Delta-G solvation = -4106.871537 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.02682 -39.71661 -38.10659 -37.05083 -36.44319 -33.91766 -33.52078 -32.22049 -31.05212 -29.39810 -28.85553 -27.01445 -26.71084 -24.97739 -23.76618 -22.42963 -21.28172 -21.12223 -20.85114 -19.42470 -19.07832 -17.69525 -17.17666 -16.95613 -16.56587 -16.16302 -15.59056 -15.29491 -15.09129 -14.59111 -14.42380 -14.24478 -13.76874 -13.58860 -13.40197 -13.25166 -13.11358 -12.96567 -12.56621 -12.53876 -12.12755 -11.82236 -11.61810 -11.60509 -11.51509 -11.36395 -11.18746 -11.09250 -10.98948 -10.90075 -10.72873 -10.62122 -10.39667 -10.33657 -10.23584 -10.14596 -9.48410 -9.39266 -9.14692 -8.99172 -8.75397 -7.28924 -7.15927 -6.59790 -4.34726 2.19879 2.61833 2.82055 3.00067 3.09775 3.13816 3.26506 3.29830 3.61524 3.73382 3.98905 4.43860 4.65937 4.74821 4.81005 4.89218 4.96266 4.98467 5.05291 5.23355 5.36433 5.43092 5.47907 5.54298 5.71156 5.75512 5.82022 5.92850 5.96971 5.98822 6.01518 6.04487 6.15648 6.22156 6.29223 6.38420 6.44603 6.52238 6.62303 6.81282 6.86810 7.16058 7.31936 7.45501 7.68444 7.74674 7.89309 7.95420 8.12627 8.14017 8.35845 8.69104 8.83778 8.97558 9.04630 10.33377 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.009544 B = 0.003970 C = 0.003472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2933.229136 B = 7051.393012 C = 8063.064204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.358 6.358 3 C 0.472 3.528 4 O -0.506 6.506 5 C -0.130 4.130 6 C 0.227 3.773 7 C -0.170 4.170 8 N -0.740 5.740 9 C 0.518 3.482 10 O -0.515 6.515 11 C -0.073 4.073 12 C -0.169 4.169 13 C -0.088 4.088 14 C -0.229 4.229 15 C -0.113 4.113 16 C -0.146 4.146 17 C 0.127 3.873 18 C -0.459 4.459 19 H 0.073 0.927 20 C 0.073 3.927 21 N -0.811 5.811 22 Si 0.905 3.095 23 H -0.271 1.271 24 H -0.278 1.278 25 H -0.262 1.262 26 C -0.152 4.152 27 C -0.188 4.188 28 C -0.172 4.172 29 H 0.099 0.901 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.106 0.894 33 H 0.135 0.865 34 H 0.053 0.947 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.397 0.603 38 H 0.098 0.902 39 H 0.074 0.926 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.121 0.879 44 H 0.277 0.723 45 H 0.124 0.876 46 H 0.098 0.902 47 H 0.096 0.904 48 H 0.094 0.906 49 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.609 7.789 -7.751 15.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.274 6.274 3 C 0.316 3.684 4 O -0.395 6.395 5 C -0.169 4.169 6 C 0.140 3.860 7 C -0.227 4.227 8 N -0.398 5.398 9 C 0.306 3.694 10 O -0.389 6.389 11 C -0.113 4.113 12 C -0.171 4.171 13 C -0.107 4.107 14 C -0.248 4.248 15 C -0.132 4.132 16 C -0.166 4.166 17 C 0.124 3.876 18 C -0.490 4.490 19 H 0.091 0.909 20 C -0.142 4.142 21 N -0.438 5.438 22 Si 0.730 3.270 23 H -0.197 1.197 24 H -0.203 1.203 25 H -0.186 1.186 26 C -0.171 4.171 27 C -0.225 4.225 28 C -0.209 4.209 29 H 0.117 0.883 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.124 0.876 33 H 0.153 0.847 34 H 0.072 0.928 35 H 0.100 0.900 36 H 0.094 0.906 37 H 0.235 0.765 38 H 0.116 0.884 39 H 0.093 0.907 40 H 0.102 0.898 41 H 0.103 0.897 42 H 0.104 0.896 43 H 0.139 0.861 44 H 0.088 0.912 45 H 0.142 0.858 46 H 0.116 0.884 47 H 0.114 0.886 48 H 0.112 0.888 49 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -12.067 7.470 -7.070 15.856 hybrid contribution -0.108 -0.259 -1.062 1.098 sum -12.176 7.211 -8.132 16.321 Atomic orbital electron populations 1.23239 0.76667 1.03583 1.02347 1.86563 1.23176 1.33650 1.83993 1.23674 0.92064 0.81112 0.71547 1.90569 1.67441 1.35777 1.45725 1.21879 0.87360 0.99693 1.07940 1.19250 0.80355 0.91644 0.94738 1.22409 1.02775 1.00078 0.97473 1.46530 1.05522 1.57077 1.30633 1.21222 0.90642 0.76638 0.80857 1.90616 1.71644 1.43617 1.33046 1.20298 0.89732 1.00337 1.00913 1.19155 1.09766 0.93656 0.94551 1.20316 0.99805 0.96794 0.93754 1.20361 1.11639 0.94371 0.98433 1.20730 1.00946 0.93929 0.97579 1.21436 1.03213 0.99925 0.92006 1.17358 0.88540 0.89731 0.91926 1.19405 1.13935 1.06454 1.09218 0.90936 1.25825 0.93953 0.96684 0.97720 1.69768 1.15772 1.21559 1.36739 0.86364 0.80152 0.79002 0.81500 1.19661 1.20302 1.18636 1.22735 1.00236 0.98455 0.95639 1.23075 0.99383 1.03785 0.96249 1.22937 1.03733 0.91312 1.02951 0.88252 0.91907 0.92065 0.87570 0.84737 0.92809 0.89993 0.90569 0.76528 0.88374 0.90725 0.89759 0.89660 0.89562 0.86075 0.91238 0.85823 0.88380 0.88575 0.88769 0.88591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.34 10.56 101.05 1.07 1.40 16 2 O -0.36 -4.79 10.56 -39.25 -0.41 -5.21 16 3 C 0.47 6.65 7.25 36.00 0.26 6.91 16 4 O -0.51 -7.35 11.37 -18.75 -0.21 -7.57 16 5 C -0.13 -1.92 4.75 -27.88 -0.13 -2.05 16 6 C 0.23 3.09 0.60 -131.82 -0.08 3.01 16 7 C -0.17 -2.49 8.05 37.15 0.30 -2.20 16 8 N -0.74 -10.31 4.83 -47.60 -0.23 -10.54 16 9 C 0.52 9.38 6.83 -10.99 -0.08 9.30 16 10 O -0.52 -11.21 12.27 5.55 0.07 -11.14 16 11 C -0.07 -1.36 5.21 -29.04 -0.15 -1.52 16 12 C -0.17 -3.94 4.43 -103.91 -0.46 -4.41 16 13 C -0.09 -2.00 9.66 -39.66 -0.38 -2.38 16 14 C -0.23 -5.25 10.05 -39.29 -0.39 -5.64 16 15 C -0.11 -2.73 10.02 -39.66 -0.40 -3.13 16 16 C -0.15 -3.86 8.64 -38.87 -0.34 -4.20 16 17 C 0.13 3.30 5.53 -106.83 -0.59 2.71 16 18 C -0.46 -11.75 7.94 -37.74 -0.30 -12.05 16 19 H 0.07 1.80 6.95 -52.49 -0.36 1.43 16 20 C 0.07 1.82 5.37 -17.34 -0.09 1.72 16 21 N -0.81 -20.89 10.77 55.55 0.60 -20.29 16 22 Si 0.90 18.66 29.56 -169.99 -5.02 13.64 16 23 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 24 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 25 H -0.26 -5.38 7.11 56.52 0.40 -4.97 16 26 C -0.15 -1.74 4.49 -90.62 -0.41 -2.15 16 27 C -0.19 -1.78 9.72 -26.69 -0.26 -2.04 16 28 C -0.17 -1.67 9.55 -26.70 -0.25 -1.93 16 29 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 31 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 32 H 0.11 1.46 8.14 -51.93 -0.42 1.04 16 33 H 0.13 2.36 6.09 -51.93 -0.32 2.05 16 34 H 0.05 0.73 7.69 -51.93 -0.40 0.33 16 35 H 0.08 1.22 5.52 -51.93 -0.29 0.93 16 36 H 0.08 1.32 6.26 -51.93 -0.33 0.99 16 37 H 0.40 4.52 5.61 -40.82 -0.23 4.29 16 38 H 0.10 1.81 7.21 -51.93 -0.37 1.43 16 39 H 0.07 1.17 8.05 -51.93 -0.42 0.75 16 40 H 0.08 1.68 8.06 -52.49 -0.42 1.25 16 41 H 0.09 1.74 8.06 -52.49 -0.42 1.31 16 42 H 0.09 1.87 8.06 -52.49 -0.42 1.44 16 43 H 0.12 3.31 6.30 -52.49 -0.33 2.98 16 44 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 45 H 0.12 1.52 6.01 -51.93 -0.31 1.21 16 46 H 0.10 0.89 5.92 -51.93 -0.31 0.58 16 47 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 48 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 49 H 0.10 0.93 7.98 -51.93 -0.41 0.52 16 LS Contribution 390.25 15.07 5.88 5.88 Total: -1.00 -29.99 390.25 -9.04 -39.03 By element: Atomic # 1 Polarization: 21.82 SS G_CDS: -7.02 Total: 14.80 kcal Atomic # 6 Polarization: -15.92 SS G_CDS: -2.69 Total: -18.61 kcal Atomic # 7 Polarization: -31.19 SS G_CDS: 0.37 Total: -30.82 kcal Atomic # 8 Polarization: -23.35 SS G_CDS: -0.56 Total: -23.91 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -5.02 Total: 13.64 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -29.99 -9.04 -39.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871236115.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.157 kcal (2) G-P(sol) polarization free energy of solvation -29.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds