Wall clock time and date at job start Wed Apr 1 2020 03:25:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34226 * 117.00514 * 2 1 4 4 O 1.20822 * 119.99669 * 359.97438 * 3 2 1 5 5 C 1.50693 * 120.00107 * 179.97438 * 3 2 1 6 6 C 1.53007 * 109.47077 * 179.97438 * 5 3 2 7 7 C 1.52994 * 109.47099 * 60.00078 * 6 5 3 8 8 N 1.46508 * 109.47094 * 179.97438 * 6 5 3 9 9 C 1.34778 * 120.00134 * 303.73143 * 8 6 5 10 10 O 1.21283 * 119.99893 * 354.67506 * 9 8 6 11 11 C 1.50697 * 120.00029 * 174.40011 * 9 8 6 12 12 C 1.50702 * 109.47214 * 180.02562 * 11 9 8 13 13 C 1.37640 * 120.12408 * 265.00171 * 12 11 9 14 14 C 1.38617 * 120.24512 * 179.97438 * 13 12 11 15 15 C 1.38651 * 120.50225 * 0.02562 * 14 13 12 16 16 C 1.37600 * 120.24722 * 0.02562 * 15 14 13 17 17 C 1.40692 * 120.12804 * 84.72102 * 12 11 9 18 18 C 1.41395 * 120.24548 * 0.02562 * 17 12 11 19 19 H 1.08001 * 119.99866 * 325.63531 * 18 17 12 20 20 C 1.39942 * 119.99964 * 145.63721 * 18 17 12 21 21 N 1.30820 * 120.00221 * 358.52038 * 20 18 17 22 22 Si 1.86811 * 119.99880 * 178.52636 * 20 18 17 23 23 H 1.48501 * 109.46879 * 89.99940 * 22 20 18 24 24 H 1.48500 * 109.46749 * 209.99549 * 22 20 18 25 25 H 1.48492 * 109.46945 * 329.99685 * 22 20 18 26 26 C 1.52995 * 109.47211 * 299.99799 * 6 5 3 27 27 C 1.53004 * 117.50171 * 254.37423 * 26 6 5 28 28 C 1.52995 * 117.49922 * 185.71245 * 26 6 5 29 29 H 1.09001 * 109.47536 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47371 * 300.00549 * 1 2 3 31 31 H 1.09002 * 109.46856 * 59.99776 * 1 2 3 32 32 H 1.09006 * 109.47427 * 60.00051 * 5 3 2 33 33 H 1.09004 * 109.47385 * 299.99540 * 5 3 2 34 34 H 1.08996 * 109.47184 * 179.97438 * 7 6 5 35 35 H 1.09000 * 109.46998 * 300.00491 * 7 6 5 36 36 H 1.09004 * 109.47364 * 59.99495 * 7 6 5 37 37 H 0.96997 * 119.99850 * 123.72862 * 8 6 5 38 38 H 1.09000 * 109.46591 * 299.99536 * 11 9 8 39 39 H 1.08991 * 109.47130 * 59.99580 * 11 9 8 40 40 H 1.07999 * 119.87815 * 359.97438 * 13 12 11 41 41 H 1.07994 * 119.74696 * 180.02562 * 14 13 12 42 42 H 1.07995 * 119.87819 * 180.02562 * 15 14 13 43 43 H 1.08001 * 120.12620 * 179.97438 * 16 15 14 44 44 H 0.97006 * 119.99667 * 180.02562 * 21 20 18 45 45 H 1.09004 * 115.54869 * 40.04098 * 26 6 5 46 46 H 1.08992 * 117.49572 * 0.02562 * 27 26 6 47 47 H 1.08997 * 117.49775 * 145.01581 * 27 26 6 48 48 H 1.09002 * 117.49851 * 214.98315 * 28 26 6 49 49 H 1.08996 * 117.49918 * 0.02562 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2092 -0.0005 5 6 3.5663 1.2747 0.0006 6 6 4.0002 2.7419 -0.0002 7 6 3.4527 3.4363 1.2483 8 7 5.4633 2.8185 0.0010 9 6 6.1694 2.2072 0.9728 10 8 5.5931 1.6762 1.8985 11 6 7.6746 2.1782 0.9059 12 6 8.2164 1.4397 2.1026 13 6 8.6081 2.1348 3.2242 14 6 9.1063 1.4580 4.3265 15 6 9.2166 0.0759 4.3131 16 6 8.8321 -0.6393 3.2023 17 6 8.3183 0.0366 2.0799 18 6 7.9140 -0.6884 0.9353 19 1 7.0778 -0.3435 0.3452 20 6 8.5973 -1.8529 0.5672 21 7 9.6281 -2.2548 1.2653 22 14 8.0375 -2.8333 -0.9211 23 1 8.7378 -2.3367 -2.1329 24 1 8.3584 -4.2689 -0.7174 25 1 6.5716 -2.6737 -1.0962 26 6 3.4538 3.4347 -1.2501 27 6 4.4433 3.7465 -2.3747 28 6 3.8904 4.8786 -1.5053 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 3.9564 0.7803 -0.8892 33 1 3.9557 0.7808 0.8909 34 1 3.7622 4.4814 1.2480 35 1 2.3642 3.3792 1.2479 36 1 3.8420 2.9427 2.1388 37 1 5.9238 3.3091 -0.6976 38 1 7.9879 1.6705 -0.0063 39 1 8.0579 3.1984 0.9039 40 1 8.5269 3.2115 3.2454 41 1 9.4109 2.0114 5.2024 42 1 9.6058 -0.4411 5.1777 43 1 8.9193 -1.7158 3.1938 44 1 10.1019 -3.0618 1.0098 45 1 2.4388 3.1579 -1.5352 46 1 5.4834 3.4576 -2.2242 47 1 4.0792 3.6751 -3.3995 48 1 3.1628 5.5518 -1.9587 49 1 4.5673 5.3349 -0.7831 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871236115.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:25:14 Heat of formation + Delta-G solvation = -85.425287 kcal Electronic energy + Delta-G solvation = -31481.822872 eV Core-core repulsion = 27374.290501 eV Total energy + Delta-G solvation = -4107.532371 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.14469 -40.94683 -39.56738 -38.53299 -37.47273 -35.38836 -35.02560 -33.72182 -32.50285 -31.26566 -29.93295 -28.36461 -27.95594 -26.80906 -24.82947 -23.19555 -22.75947 -22.47683 -22.31578 -21.03083 -20.25978 -19.01230 -18.75813 -18.25277 -17.59526 -17.33616 -17.09505 -16.64263 -16.24049 -16.03791 -15.98676 -15.40207 -15.25527 -15.03185 -14.81575 -14.49740 -14.32233 -14.25945 -14.09167 -13.68132 -13.48610 -13.30450 -12.97375 -12.90463 -12.77453 -12.75388 -12.62042 -12.41706 -12.36639 -12.23614 -12.16465 -12.06495 -11.74588 -11.45709 -11.30070 -11.22277 -11.13189 -11.03282 -10.98390 -10.44547 -10.01122 -9.14055 -9.04543 -8.44667 -6.28130 1.02885 1.08892 1.17527 1.40514 1.52120 1.54528 1.61395 1.91352 2.26071 2.40909 2.87879 2.89144 3.48668 3.60452 3.77439 3.92359 3.95110 4.06841 4.19692 4.23654 4.27026 4.31631 4.43928 4.46079 4.50392 4.64798 4.65334 4.67583 4.72888 4.74433 4.77149 4.84696 4.86572 4.91931 5.10495 5.12185 5.18655 5.27226 5.27739 5.30898 5.42534 5.45246 5.59225 5.68161 5.84258 6.07710 6.23512 6.24029 6.47793 6.67400 6.69987 6.81022 7.07119 7.16380 7.48622 8.50193 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.009544 B = 0.003970 C = 0.003472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2933.229136 B = 7051.393012 C = 8063.064204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.372 6.372 3 C 0.475 3.525 4 O -0.512 6.512 5 C -0.131 4.131 6 C 0.229 3.771 7 C -0.161 4.161 8 N -0.719 5.719 9 C 0.522 3.478 10 O -0.557 6.557 11 C -0.073 4.073 12 C -0.172 4.172 13 C -0.098 4.098 14 C -0.232 4.232 15 C -0.125 4.125 16 C -0.180 4.180 17 C 0.095 3.905 18 C -0.479 4.479 19 H 0.072 0.928 20 C 0.031 3.969 21 N -0.844 5.844 22 Si 0.972 3.028 23 H -0.258 1.258 24 H -0.275 1.275 25 H -0.261 1.261 26 C -0.167 4.167 27 C -0.175 4.175 28 C -0.163 4.163 29 H 0.126 0.874 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.113 0.887 33 H 0.102 0.898 34 H 0.064 0.936 35 H 0.078 0.922 36 H 0.045 0.955 37 H 0.412 0.588 38 H 0.100 0.900 39 H 0.111 0.889 40 H 0.116 0.884 41 H 0.114 0.886 42 H 0.103 0.897 43 H 0.098 0.902 44 H 0.281 0.719 45 H 0.117 0.883 46 H 0.103 0.897 47 H 0.111 0.889 48 H 0.107 0.893 49 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.322 9.631 -9.828 18.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.289 6.289 3 C 0.320 3.680 4 O -0.401 6.401 5 C -0.169 4.169 6 C 0.143 3.857 7 C -0.219 4.219 8 N -0.377 5.377 9 C 0.310 3.690 10 O -0.435 6.435 11 C -0.112 4.112 12 C -0.174 4.174 13 C -0.116 4.116 14 C -0.251 4.251 15 C -0.143 4.143 16 C -0.200 4.200 17 C 0.093 3.907 18 C -0.510 4.510 19 H 0.090 0.910 20 C -0.181 4.181 21 N -0.473 5.473 22 Si 0.793 3.207 23 H -0.182 1.182 24 H -0.200 1.200 25 H -0.185 1.185 26 C -0.185 4.185 27 C -0.213 4.213 28 C -0.200 4.200 29 H 0.144 0.856 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.131 0.869 33 H 0.120 0.880 34 H 0.083 0.917 35 H 0.097 0.903 36 H 0.064 0.936 37 H 0.253 0.747 38 H 0.118 0.882 39 H 0.129 0.871 40 H 0.134 0.866 41 H 0.132 0.868 42 H 0.121 0.879 43 H 0.116 0.884 44 H 0.091 0.909 45 H 0.135 0.865 46 H 0.121 0.879 47 H 0.129 0.871 48 H 0.125 0.875 49 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -12.782 9.344 -9.175 18.300 hybrid contribution 0.065 -0.773 -0.329 0.842 sum -12.717 8.571 -9.504 18.042 Atomic orbital electron populations 1.23563 0.74486 1.05601 1.02837 1.86538 1.25396 1.33208 1.83719 1.23461 0.91779 0.81326 0.71481 1.90555 1.67520 1.35947 1.46087 1.21803 0.88150 1.00317 1.06655 1.19234 0.79709 0.91170 0.95602 1.22297 1.02408 1.00412 0.96767 1.46272 1.05786 1.55850 1.29764 1.21051 0.90456 0.76480 0.81021 1.90625 1.72257 1.45581 1.34993 1.20322 0.90205 1.01756 0.98965 1.19611 1.08333 0.93076 0.96341 1.20751 0.99027 0.98544 0.93320 1.20756 1.10674 0.93988 0.99659 1.20976 1.00906 0.94919 0.97524 1.21421 1.05767 0.99194 0.93611 1.17735 0.89463 0.91422 0.92120 1.19552 1.14364 1.07554 1.09565 0.90973 1.26636 0.93723 0.97325 1.00417 1.69870 1.16866 1.22149 1.38376 0.85350 0.79627 0.77422 0.78256 1.18233 1.20014 1.18514 1.22533 1.00424 1.00084 0.95480 1.23177 0.99020 1.02664 0.96393 1.23026 1.03687 0.90563 1.02721 0.85585 0.91931 0.91068 0.86883 0.87959 0.91677 0.90333 0.93597 0.74690 0.88169 0.87119 0.86564 0.86813 0.87918 0.88377 0.90903 0.86490 0.87868 0.87075 0.87464 0.88406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.56 113.37 1.20 1.70 16 2 O -0.37 -9.86 10.56 -51.38 -0.54 -10.40 16 3 C 0.48 13.35 7.25 71.23 0.52 13.87 16 4 O -0.51 -14.57 11.37 21.98 0.25 -14.32 16 5 C -0.13 -3.87 4.75 29.85 0.14 -3.73 16 6 C 0.23 6.03 0.60 3.60 0.00 6.04 16 7 C -0.16 -4.69 8.05 71.98 0.58 -4.11 16 8 N -0.72 -18.92 4.83 -422.91 -2.04 -20.96 16 9 C 0.52 18.54 6.83 87.66 0.60 19.14 16 10 O -0.56 -24.76 12.27 -3.04 -0.04 -24.79 16 11 C -0.07 -2.63 5.21 29.10 0.15 -2.47 16 12 C -0.17 -7.97 4.43 -19.41 -0.09 -8.06 16 13 C -0.10 -4.31 9.66 22.22 0.21 -4.10 16 14 C -0.23 -10.41 10.05 22.46 0.23 -10.19 16 15 C -0.12 -6.13 10.02 22.22 0.22 -5.90 16 16 C -0.18 -9.91 8.64 22.73 0.20 -9.71 16 17 C 0.09 5.07 5.53 -21.29 -0.12 4.95 16 18 C -0.48 -25.20 7.94 23.46 0.19 -25.01 16 19 H 0.07 3.66 6.95 -2.91 -0.02 3.64 16 20 C 0.03 1.55 5.37 85.26 0.46 2.01 16 21 N -0.84 -44.99 10.77 21.83 0.24 -44.75 16 22 Si 0.97 38.60 29.56 68.60 2.03 40.63 16 23 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 24 H -0.28 -10.70 7.11 99.48 0.71 -10.00 16 25 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 26 C -0.17 -3.46 4.49 -10.80 -0.05 -3.51 16 27 C -0.18 -2.74 9.72 30.62 0.30 -2.44 16 28 C -0.16 -2.64 9.55 30.62 0.29 -2.34 16 29 H 0.13 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.06 1.11 8.13 -2.38 -0.02 1.10 16 31 H 0.07 1.13 8.13 -2.39 -0.02 1.11 16 32 H 0.11 3.09 8.14 -2.38 -0.02 3.07 16 33 H 0.10 3.78 6.09 -2.38 -0.01 3.76 16 34 H 0.06 1.69 7.69 -2.39 -0.02 1.67 16 35 H 0.08 2.33 5.52 -2.39 -0.01 2.32 16 36 H 0.04 1.62 6.26 -2.39 -0.01 1.60 16 37 H 0.41 8.24 5.61 -92.71 -0.52 7.72 16 38 H 0.10 3.58 7.21 -2.39 -0.02 3.56 16 39 H 0.11 3.13 8.05 -2.39 -0.02 3.11 16 40 H 0.12 4.28 8.06 -2.91 -0.02 4.26 16 41 H 0.11 4.38 8.06 -2.91 -0.02 4.35 16 42 H 0.10 4.51 8.06 -2.91 -0.02 4.49 16 43 H 0.10 5.71 6.30 -2.91 -0.02 5.70 16 44 H 0.28 13.74 8.30 -92.70 -0.77 12.97 16 45 H 0.12 2.66 6.01 -2.38 -0.01 2.65 16 46 H 0.10 1.50 5.92 -2.39 -0.01 1.49 16 47 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 48 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 49 H 0.10 1.57 7.98 -2.39 -0.02 1.55 16 Total: -1.00 -67.73 390.25 5.38 -62.35 By element: Atomic # 1 Polarization: 45.66 SS G_CDS: 0.46 Total: 46.12 kcal Atomic # 6 Polarization: -38.90 SS G_CDS: 5.03 Total: -33.87 kcal Atomic # 7 Polarization: -63.91 SS G_CDS: -1.81 Total: -65.72 kcal Atomic # 8 Polarization: -49.18 SS G_CDS: -0.33 Total: -49.51 kcal Atomic # 14 Polarization: 38.60 SS G_CDS: 2.03 Total: 40.63 kcal Total: -67.73 5.38 -62.35 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871236115.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.077 kcal (2) G-P(sol) polarization free energy of solvation -67.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds