Wall clock time and date at job start Wed Apr 1 2020 02:54:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 C 1.50705 * 109.46981 * 2 1
4 4 C 1.38257 * 120.00192 * 265.18718 * 3 2 1
5 5 C 1.38215 * 120.00016 * 180.23099 * 4 3 2
6 6 C 1.38257 * 119.99478 * 359.81750 * 5 4 3
7 7 C 1.38207 * 120.00782 * 359.97438 * 6 5 4
8 8 C 1.38217 * 119.99676 * 85.00491 * 3 2 1
9 9 C 1.50697 * 120.00156 * 359.97438 * 8 3 2
10 10 H 1.09001 * 115.56092 * 334.04704 * 9 8 3
11 11 C 1.53001 * 117.49977 * 188.35196 * 9 8 3
12 12 C 1.53002 * 60.00067 * 252.51260 * 11 9 8
13 13 H 1.09000 * 117.51769 * 107.47897 * 12 11 9
14 14 C 1.50701 * 117.49953 * 252.51233 * 12 11 9
15 15 O 1.21291 * 120.00147 * 71.06752 * 14 12 11
16 16 N 1.34777 * 119.99980 * 251.06433 * 14 12 11
17 17 C 1.37102 * 119.99880 * 4.38986 * 16 14 12
18 18 H 1.08000 * 119.99710 * 41.21866 * 17 16 14
19 19 C 1.38946 * 120.00296 * 221.21389 * 17 16 14
20 20 N 1.31419 * 119.99725 * 7.53717 * 19 17 16
21 21 Si 1.86794 * 120.00225 * 187.53086 * 19 17 16
22 22 H 1.48499 * 109.47027 * 90.00494 * 21 19 17
23 23 H 1.48505 * 109.47316 * 210.00424 * 21 19 17
24 24 H 1.48500 * 109.47280 * 330.00445 * 21 19 17
25 25 C 1.46498 * 120.00034 * 184.38838 * 16 14 12
26 26 C 1.53005 * 109.47098 * 270.00003 * 25 16 14
27 27 C 1.50700 * 109.46748 * 180.02562 * 26 25 16
28 28 O 1.20823 * 120.00457 * 0.02562 * 27 26 25
29 29 O 1.34233 * 119.99790 * 180.02562 * 27 26 25
30 30 C 1.45197 * 117.00249 * 179.97438 * 29 27 26
31 31 H 1.08998 * 109.47471 * 299.99721 * 1 2 3
32 32 H 1.08998 * 109.47629 * 59.99954 * 1 2 3
33 33 H 1.09002 * 109.47156 * 179.97438 * 1 2 3
34 34 H 1.09005 * 109.46823 * 240.00424 * 2 1 3
35 35 H 1.08998 * 109.47629 * 120.00045 * 2 1 3
36 36 H 1.08001 * 119.99867 * 0.02562 * 4 3 2
37 37 H 1.07997 * 120.00001 * 179.79143 * 5 4 3
38 38 H 1.08007 * 119.99330 * 179.97438 * 6 5 4
39 39 H 1.07997 * 120.00578 * 179.97438 * 7 6 5
40 40 H 1.08993 * 117.49847 * 145.02393 * 11 9 8
41 41 H 1.08996 * 117.49603 * 359.97438 * 11 9 8
42 42 H 0.96999 * 120.00133 * 174.99739 * 20 19 17
43 43 H 1.09001 * 109.46873 * 150.00091 * 25 16 14
44 44 H 1.08991 * 109.47139 * 30.00454 * 25 16 14
45 45 H 1.08993 * 109.46861 * 299.99841 * 26 25 16
46 46 H 1.08998 * 109.46760 * 59.99995 * 26 25 16
47 47 H 1.08991 * 109.47467 * 180.02562 * 30 29 27
48 48 H 1.09006 * 109.47101 * 300.00824 * 30 29 27
49 49 H 1.09004 * 109.46852 * 59.99632 * 30 29 27
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0323 1.4209 0.0000
4 6 2.3574 2.0392 -1.1931
5 6 2.8226 3.3407 -1.1927
6 6 2.9592 4.0255 0.0006
7 6 2.6301 3.4089 1.1930
8 6 2.1643 2.1071 1.1925
9 6 1.8055 1.4347 2.4925
10 1 1.0703 0.6333 2.4203
11 6 1.7849 2.3008 3.7537
12 6 2.9108 1.2871 3.5401
13 1 3.8976 1.6759 3.2888
14 6 2.8996 0.0447 4.3930
15 8 2.0621 -0.8123 4.2053
16 7 3.8203 -0.1141 5.3645
17 6 4.7102 0.8927 5.6367
18 1 4.3761 1.9196 5.6504
19 6 6.0419 0.5918 5.8950
20 7 6.4812 -0.6362 5.7340
21 14 7.2077 1.9329 6.4709
22 1 7.1930 1.9981 7.9544
23 1 8.5834 1.6277 6.0024
24 1 6.7735 3.2391 5.9137
25 6 3.8700 -1.3625 6.1295
26 6 2.9668 -1.2437 7.3588
27 6 3.0185 -2.5276 8.1460
28 8 3.7074 -3.4436 7.7635
29 8 2.2991 -2.6538 9.2723
30 6 2.3969 -3.9185 9.9788
31 1 -0.3634 0.5138 0.8900
32 1 -0.3634 0.5138 -0.8899
33 1 -0.3633 -1.0277 -0.0005
34 1 1.8932 -0.5138 -0.8901
35 1 1.8934 -0.5138 0.8899
36 1 2.2510 1.5040 -2.1252
37 1 3.0798 3.8225 -2.1243
38 1 3.3231 5.0424 0.0010
39 1 2.7372 3.9437 2.1251
40 1 1.0361 2.0691 4.5111
41 1 2.0313 3.3568 3.6431
42 1 7.4249 -0.8320 5.8438
43 1 4.8948 -1.5524 6.4486
44 1 3.5258 -2.1859 5.5039
45 1 3.3111 -0.4202 7.9843
46 1 1.9420 -1.0537 7.0396
47 1 1.7677 -3.8874 10.8682
48 1 2.0639 -4.7258 9.3265
49 1 3.4325 -4.0919 10.2716
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000871344063.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 02:54:43
Heat of formation + Delta-G solvation = -79.237703 kcal
Electronic energy + Delta-G solvation = -30361.140679 eV
Core-core repulsion = 26253.876621 eV
Total energy + Delta-G solvation = -4107.264057 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.177 amu
Computer time = 0.94 seconds
Orbital eigenvalues (eV)
-40.05317 -39.86827 -38.60586 -36.34290 -35.85201 -34.73357 -34.02046 -31.95233
-30.79962 -30.19505 -29.16431 -27.53861 -25.08914 -24.68532 -23.71221 -23.58357
-22.00775 -20.83429 -20.22889 -19.73147 -19.02096 -17.38159 -17.04945 -16.46792
-16.20544 -16.10678 -15.72475 -15.39893 -14.88507 -14.54509 -14.37401 -14.06616
-13.68216 -13.59464 -13.49005 -13.33880 -13.25317 -13.00399 -12.63414 -12.21019
-12.13243 -12.00535 -11.89430 -11.73293 -11.62501 -11.39200 -11.20215 -11.17671
-11.02753 -10.79322 -10.67092 -10.51873 -10.48291 -10.38110 -10.17035 -10.04106
-9.98192 -9.81026 -9.18577 -8.64963 -8.54012 -8.18084 -7.57547 -6.36684
-4.21957 1.50207 1.55653 2.70404 3.07139 3.07852 3.17577 3.19395
3.57149 3.91208 4.04432 4.54883 4.60171 4.90731 4.95531 4.99522
5.10447 5.16363 5.25582 5.32100 5.32257 5.33736 5.39363 5.47222
5.54876 5.61380 5.66198 5.68132 5.74538 5.79969 5.87527 6.00636
6.02129 6.07130 6.15197 6.17997 6.31469 6.32931 6.34876 6.42383
6.48706 6.64045 6.65999 6.76043 6.79420 6.93889 6.95346 7.18589
7.29288 7.56723 7.88726 8.21745 8.33979 9.01161 9.41876 9.84709
10.61489
Molecular weight = 345.18amu
Principal moments of inertia in cm(-1)
A = 0.010389 B = 0.003272 C = 0.002684
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2694.549179 B = 8554.137699 C =10429.731330
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C -0.091 4.091
3 C -0.072 4.072
4 C -0.119 4.119
5 C -0.129 4.129
6 C -0.124 4.124
7 C -0.118 4.118
8 C -0.036 4.036
9 C -0.106 4.106
10 H 0.124 0.876
11 C -0.155 4.155
12 C -0.129 4.129
13 H 0.124 0.876
14 C 0.501 3.499
15 O -0.601 6.601
16 N -0.434 5.434
17 C -0.336 4.336
18 H 0.091 0.909
19 C 0.044 3.956
20 N -0.864 5.864
21 Si 0.919 3.081
22 H -0.276 1.276
23 H -0.282 1.282
24 H -0.268 1.268
25 C 0.119 3.881
26 C -0.122 4.122
27 C 0.466 3.534
28 O -0.505 6.505
29 O -0.367 6.367
30 C 0.035 3.965
31 H 0.058 0.942
32 H 0.050 0.950
33 H 0.056 0.944
34 H 0.066 0.934
35 H 0.084 0.916
36 H 0.117 0.883
37 H 0.116 0.884
38 H 0.118 0.882
39 H 0.124 0.876
40 H 0.096 0.904
41 H 0.097 0.903
42 H 0.273 0.727
43 H 0.130 0.870
44 H 0.061 0.939
45 H 0.103 0.897
46 H 0.094 0.906
47 H 0.095 0.905
48 H 0.059 0.941
49 H 0.059 0.941
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.394 4.895 -3.942 9.705
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C -0.128 4.128
3 C -0.072 4.072
4 C -0.137 4.137
5 C -0.147 4.147
6 C -0.143 4.143
7 C -0.136 4.136
8 C -0.037 4.037
9 C -0.124 4.124
10 H 0.141 0.859
11 C -0.192 4.192
12 C -0.150 4.150
13 H 0.142 0.858
14 C 0.290 3.710
15 O -0.487 6.487
16 N -0.151 5.151
17 C -0.464 4.464
18 H 0.109 0.891
19 C -0.162 4.162
20 N -0.500 5.500
21 Si 0.745 3.255
22 H -0.202 1.202
23 H -0.208 1.208
24 H -0.192 1.192
25 C -0.005 4.005
26 C -0.161 4.161
27 C 0.309 3.691
28 O -0.391 6.391
29 O -0.285 6.285
30 C -0.059 4.059
31 H 0.077 0.923
32 H 0.069 0.931
33 H 0.075 0.925
34 H 0.085 0.915
35 H 0.102 0.898
36 H 0.135 0.865
37 H 0.134 0.866
38 H 0.136 0.864
39 H 0.142 0.858
40 H 0.114 0.886
41 H 0.115 0.885
42 H 0.084 0.916
43 H 0.148 0.852
44 H 0.080 0.920
45 H 0.121 0.879
46 H 0.113 0.887
47 H 0.113 0.887
48 H 0.078 0.922
49 H 0.078 0.922
Dipole moment (debyes) X Y Z Total
from point charges -7.384 4.025 -4.023 9.322
hybrid contribution 0.922 0.537 0.413 1.144
sum -6.462 4.563 -3.610 8.695
Atomic orbital electron populations
1.21718 0.94894 1.01623 1.01835 1.20588 0.96106 0.92713 1.03378
1.19726 0.98943 0.96172 0.92383 1.20965 1.00370 0.95156 0.97235
1.21035 1.00895 0.94982 0.97835 1.21046 1.00839 0.99780 0.92586
1.21087 0.99461 0.94758 0.98277 1.19101 0.97944 0.93456 0.93152
1.21126 1.02630 1.01788 0.86882 0.85858 1.22986 1.01061 0.96180
0.98995 1.22152 0.95598 0.97680 0.99603 0.85835 1.19584 0.83638
0.86982 0.80781 1.90528 1.40980 1.45167 1.72040 1.43290 1.28844
1.14890 1.28111 1.19475 0.88783 0.88524 1.49664 0.89110 1.25543
0.97847 0.96806 0.96022 1.69635 1.15684 1.18597 1.46127 0.86058
0.79520 0.80826 0.79065 1.20186 1.20778 1.19249 1.21445 1.02462
0.87100 0.89489 1.21898 1.04162 0.92017 0.98066 1.24110 0.75780
0.90555 0.78649 1.90646 1.38704 1.41700 1.68095 1.86542 1.65145
1.38917 1.37855 1.23158 1.02567 0.84101 0.96077 0.92284 0.93092
0.92480 0.91498 0.89754 0.86456 0.86581 0.86438 0.85806 0.88564
0.88460 0.91646 0.85234 0.92049 0.87867 0.88733 0.88669 0.92223
0.92176
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.75 9.74 37.15 0.36 -1.39 16
2 C -0.09 -1.25 5.38 -27.88 -0.15 -1.40 16
3 C -0.07 -1.05 5.13 -104.62 -0.54 -1.59 16
4 C -0.12 -1.53 9.68 -39.58 -0.38 -1.91 16
5 C -0.13 -1.56 10.05 -39.58 -0.40 -1.95 16
6 C -0.12 -1.55 10.05 -39.59 -0.40 -1.95 16
7 C -0.12 -1.66 9.30 -39.58 -0.37 -2.02 16
8 C -0.04 -0.56 5.61 -104.62 -0.59 -1.15 16
9 C -0.11 -1.79 4.65 -91.77 -0.43 -2.22 16
10 H 0.12 2.22 5.48 -51.93 -0.28 1.93 16
11 C -0.15 -2.48 9.56 -26.73 -0.26 -2.73 16
12 C -0.13 -2.53 4.65 -91.77 -0.43 -2.96 16
13 H 0.12 2.51 7.68 -51.93 -0.40 2.11 16
14 C 0.50 11.75 7.41 -10.98 -0.08 11.67 16
15 O -0.60 -15.20 15.88 5.55 0.09 -15.11 16
16 N -0.43 -10.52 2.52 -114.81 -0.29 -10.81 16
17 C -0.34 -8.08 8.29 -14.93 -0.12 -8.20 16
18 H 0.09 2.07 7.52 -52.49 -0.39 1.67 16
19 C 0.04 1.06 5.24 -17.47 -0.09 0.97 16
20 N -0.86 -22.50 10.91 55.50 0.61 -21.90 16
21 Si 0.92 18.87 29.56 -169.99 -5.03 13.84 16
22 H -0.28 -5.65 7.11 56.52 0.40 -5.24 16
23 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16
24 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16
25 C 0.12 2.86 4.25 -4.04 -0.02 2.84 16
26 C -0.12 -2.47 6.14 -27.88 -0.17 -2.64 16
27 C 0.47 9.13 7.96 36.01 0.29 9.42 16
28 O -0.50 -11.18 15.73 -18.75 -0.29 -11.47 16
29 O -0.37 -6.11 10.57 -39.26 -0.41 -6.52 16
30 C 0.04 0.44 10.56 101.05 1.07 1.51 16
31 H 0.06 0.76 7.17 -51.93 -0.37 0.39 16
32 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16
33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16
34 H 0.07 0.82 8.05 -51.93 -0.42 0.40 16
35 H 0.08 1.37 6.95 -51.93 -0.36 1.01 16
36 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16
37 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16
38 H 0.12 1.19 8.06 -52.48 -0.42 0.77 16
39 H 0.12 1.60 6.02 -52.49 -0.32 1.28 16
40 H 0.10 1.54 8.14 -51.93 -0.42 1.11 16
41 H 0.10 1.33 6.18 -51.93 -0.32 1.01 16
42 H 0.27 6.78 8.32 -40.82 -0.34 6.44 16
43 H 0.13 3.40 5.19 -51.93 -0.27 3.14 16
44 H 0.06 1.58 7.44 -51.93 -0.39 1.20 16
45 H 0.10 1.98 8.14 -51.93 -0.42 1.56 16
46 H 0.09 1.86 8.14 -51.93 -0.42 1.43 16
47 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16
48 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16
49 H 0.06 0.75 8.13 -51.93 -0.42 0.33 16
LS Contribution 405.43 15.07 6.11 6.11
Total: -1.00 -29.60 405.43 -9.23 -38.83
By element:
Atomic # 1 Polarization: 20.05 SS G_CDS: -7.31 Total: 12.74 kcal
Atomic # 6 Polarization: -3.01 SS G_CDS: -2.70 Total: -5.72 kcal
Atomic # 7 Polarization: -33.02 SS G_CDS: 0.32 Total: -32.70 kcal
Atomic # 8 Polarization: -32.49 SS G_CDS: -0.62 Total: -33.11 kcal
Atomic # 14 Polarization: 18.87 SS G_CDS: -5.03 Total: 13.84 kcal
Total LS contribution 6.11 Total: 6.11 kcal
Total: -29.60 -9.23 -38.83 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000871344063.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -40.408 kcal
(2) G-P(sol) polarization free energy of solvation -29.602 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.009 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.228 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.830 kcal
(6) G-S(sol) free energy of system = (1) + (5) -79.238 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.95 seconds