Wall clock time and date at job start Wed Apr 1 2020 02:54:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 C 1.50705 * 109.46981 * 2 1
4 4 C 1.38257 * 120.00192 * 265.18718 * 3 2 1
5 5 C 1.38215 * 120.00016 * 180.23099 * 4 3 2
6 6 C 1.38257 * 119.99478 * 359.81750 * 5 4 3
7 7 C 1.38207 * 120.00782 * 359.97438 * 6 5 4
8 8 C 1.38217 * 119.99676 * 85.00491 * 3 2 1
9 9 C 1.50697 * 120.00156 * 359.97438 * 8 3 2
10 10 H 1.09001 * 115.56092 * 334.04704 * 9 8 3
11 11 C 1.53001 * 117.49977 * 188.35196 * 9 8 3
12 12 C 1.53002 * 60.00067 * 252.51260 * 11 9 8
13 13 H 1.09000 * 117.51769 * 107.47897 * 12 11 9
14 14 C 1.50701 * 117.49953 * 252.51233 * 12 11 9
15 15 O 1.21291 * 120.00147 * 71.06752 * 14 12 11
16 16 N 1.34777 * 119.99980 * 251.06433 * 14 12 11
17 17 C 1.37102 * 119.99880 * 4.38986 * 16 14 12
18 18 H 1.08000 * 119.99710 * 41.21866 * 17 16 14
19 19 C 1.38946 * 120.00296 * 221.21389 * 17 16 14
20 20 N 1.31419 * 119.99725 * 7.53717 * 19 17 16
21 21 Si 1.86794 * 120.00225 * 187.53086 * 19 17 16
22 22 H 1.48499 * 109.47027 * 90.00494 * 21 19 17
23 23 H 1.48505 * 109.47316 * 210.00424 * 21 19 17
24 24 H 1.48500 * 109.47280 * 330.00445 * 21 19 17
25 25 C 1.46498 * 120.00034 * 184.38838 * 16 14 12
26 26 C 1.53005 * 109.47098 * 270.00003 * 25 16 14
27 27 C 1.50700 * 109.46748 * 180.02562 * 26 25 16
28 28 O 1.20823 * 120.00457 * 0.02562 * 27 26 25
29 29 O 1.34233 * 119.99790 * 180.02562 * 27 26 25
30 30 C 1.45197 * 117.00249 * 179.97438 * 29 27 26
31 31 H 1.08998 * 109.47471 * 299.99721 * 1 2 3
32 32 H 1.08998 * 109.47629 * 59.99954 * 1 2 3
33 33 H 1.09002 * 109.47156 * 179.97438 * 1 2 3
34 34 H 1.09005 * 109.46823 * 240.00424 * 2 1 3
35 35 H 1.08998 * 109.47629 * 120.00045 * 2 1 3
36 36 H 1.08001 * 119.99867 * 0.02562 * 4 3 2
37 37 H 1.07997 * 120.00001 * 179.79143 * 5 4 3
38 38 H 1.08007 * 119.99330 * 179.97438 * 6 5 4
39 39 H 1.07997 * 120.00578 * 179.97438 * 7 6 5
40 40 H 1.08993 * 117.49847 * 145.02393 * 11 9 8
41 41 H 1.08996 * 117.49603 * 359.97438 * 11 9 8
42 42 H 0.96999 * 120.00133 * 174.99739 * 20 19 17
43 43 H 1.09001 * 109.46873 * 150.00091 * 25 16 14
44 44 H 1.08991 * 109.47139 * 30.00454 * 25 16 14
45 45 H 1.08993 * 109.46861 * 299.99841 * 26 25 16
46 46 H 1.08998 * 109.46760 * 59.99995 * 26 25 16
47 47 H 1.08991 * 109.47467 * 180.02562 * 30 29 27
48 48 H 1.09006 * 109.47101 * 300.00824 * 30 29 27
49 49 H 1.09004 * 109.46852 * 59.99632 * 30 29 27
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0323 1.4209 0.0000
4 6 2.3574 2.0392 -1.1931
5 6 2.8226 3.3407 -1.1927
6 6 2.9592 4.0255 0.0006
7 6 2.6301 3.4089 1.1930
8 6 2.1643 2.1071 1.1925
9 6 1.8055 1.4347 2.4925
10 1 1.0703 0.6333 2.4203
11 6 1.7849 2.3008 3.7537
12 6 2.9108 1.2871 3.5401
13 1 3.8976 1.6759 3.2888
14 6 2.8996 0.0447 4.3930
15 8 2.0621 -0.8123 4.2053
16 7 3.8203 -0.1141 5.3645
17 6 4.7102 0.8927 5.6367
18 1 4.3761 1.9196 5.6504
19 6 6.0419 0.5918 5.8950
20 7 6.4812 -0.6362 5.7340
21 14 7.2077 1.9329 6.4709
22 1 7.1930 1.9981 7.9544
23 1 8.5834 1.6277 6.0024
24 1 6.7735 3.2391 5.9137
25 6 3.8700 -1.3625 6.1295
26 6 2.9668 -1.2437 7.3588
27 6 3.0185 -2.5276 8.1460
28 8 3.7074 -3.4436 7.7635
29 8 2.2991 -2.6538 9.2723
30 6 2.3969 -3.9185 9.9788
31 1 -0.3634 0.5138 0.8900
32 1 -0.3634 0.5138 -0.8899
33 1 -0.3633 -1.0277 -0.0005
34 1 1.8932 -0.5138 -0.8901
35 1 1.8934 -0.5138 0.8899
36 1 2.2510 1.5040 -2.1252
37 1 3.0798 3.8225 -2.1243
38 1 3.3231 5.0424 0.0010
39 1 2.7372 3.9437 2.1251
40 1 1.0361 2.0691 4.5111
41 1 2.0313 3.3568 3.6431
42 1 7.4249 -0.8320 5.8438
43 1 4.8948 -1.5524 6.4486
44 1 3.5258 -2.1859 5.5039
45 1 3.3111 -0.4202 7.9843
46 1 1.9420 -1.0537 7.0396
47 1 1.7677 -3.8874 10.8682
48 1 2.0639 -4.7258 9.3265
49 1 3.4325 -4.0919 10.2716
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000871344063.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 02:54:42
Heat of formation + Delta-G solvation = -92.305078 kcal
Electronic energy + Delta-G solvation = -30361.707323 eV
Core-core repulsion = 26253.876621 eV
Total energy + Delta-G solvation = -4107.830701 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.177 amu
Computer time = 0.81 seconds
Orbital eigenvalues (eV)
-41.59791 -41.16934 -40.15064 -37.82984 -37.34301 -36.54247 -35.05237 -33.80429
-32.50560 -31.33755 -30.17807 -28.78659 -26.95529 -26.23053 -24.90334 -24.63413
-23.59608 -21.93420 -21.73335 -21.06728 -20.73941 -19.01304 -18.59587 -17.92069
-17.66464 -17.58805 -17.23611 -16.68590 -16.31397 -16.00142 -15.83494 -15.56412
-15.16598 -14.85433 -14.81721 -14.68518 -14.37376 -14.17321 -14.03445 -13.77160
-13.67872 -13.50376 -13.10391 -13.03347 -12.86929 -12.74168 -12.69567 -12.62594
-12.59792 -12.23546 -12.03656 -11.96293 -11.80902 -11.76073 -11.63674 -11.61520
-11.35472 -11.21785 -11.01896 -10.43320 -9.61163 -9.49501 -9.30703 -8.23388
-6.14856 0.45340 0.55219 1.11695 1.43955 1.49159 1.60388 1.64688
1.90884 2.33030 2.73511 2.95346 3.07410 3.25582 3.74750 3.85685
3.92297 3.97002 4.02330 4.07781 4.14785 4.18371 4.28999 4.30172
4.30566 4.35516 4.39239 4.51069 4.59316 4.59722 4.67910 4.68872
4.69430 4.74347 4.83240 4.99208 5.01779 5.11456 5.15892 5.17214
5.24922 5.26595 5.32410 5.38659 5.38926 5.61862 5.67417 5.69854
5.86561 6.01408 6.19557 6.43756 6.68802 7.12249 7.55045 7.98100
8.75689
Molecular weight = 345.18amu
Principal moments of inertia in cm(-1)
A = 0.010389 B = 0.003272 C = 0.002684
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2694.549179 B = 8554.137699 C =10429.731330
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.138 4.138
2 C -0.089 4.089
3 C -0.089 4.089
4 C -0.124 4.124
5 C -0.125 4.125
6 C -0.127 4.127
7 C -0.126 4.126
8 C -0.062 4.062
9 C -0.091 4.091
10 H 0.105 0.895
11 C -0.129 4.129
12 C -0.153 4.153
13 H 0.115 0.885
14 C 0.491 3.509
15 O -0.630 6.630
16 N -0.445 5.445
17 C -0.341 4.341
18 H 0.105 0.895
19 C -0.001 4.001
20 N -0.903 5.903
21 Si 0.987 3.013
22 H -0.272 1.272
23 H -0.289 1.289
24 H -0.251 1.251
25 C 0.124 3.876
26 C -0.112 4.112
27 C 0.473 3.527
28 O -0.537 6.537
29 O -0.363 6.363
30 C 0.026 3.974
31 H 0.045 0.955
32 H 0.068 0.932
33 H 0.061 0.939
34 H 0.081 0.919
35 H 0.047 0.953
36 H 0.139 0.861
37 H 0.147 0.853
38 H 0.145 0.855
39 H 0.133 0.867
40 H 0.096 0.904
41 H 0.128 0.872
42 H 0.271 0.729
43 H 0.109 0.891
44 H 0.028 0.972
45 H 0.116 0.884
46 H 0.100 0.900
47 H 0.139 0.861
48 H 0.059 0.941
49 H 0.060 0.940
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.841 7.744 -4.361 11.852
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.195 4.195
2 C -0.126 4.126
3 C -0.089 4.089
4 C -0.142 4.142
5 C -0.143 4.143
6 C -0.144 4.144
7 C -0.144 4.144
8 C -0.062 4.062
9 C -0.110 4.110
10 H 0.123 0.877
11 C -0.166 4.166
12 C -0.174 4.174
13 H 0.133 0.867
14 C 0.281 3.719
15 O -0.518 6.518
16 N -0.162 5.162
17 C -0.468 4.468
18 H 0.123 0.877
19 C -0.203 4.203
20 N -0.541 5.541
21 Si 0.810 3.190
22 H -0.197 1.197
23 H -0.215 1.215
24 H -0.175 1.175
25 C 0.000 4.000
26 C -0.150 4.150
27 C 0.317 3.683
28 O -0.427 6.427
29 O -0.279 6.279
30 C -0.067 4.067
31 H 0.065 0.935
32 H 0.087 0.913
33 H 0.080 0.920
34 H 0.100 0.900
35 H 0.066 0.934
36 H 0.157 0.843
37 H 0.165 0.835
38 H 0.163 0.837
39 H 0.151 0.849
40 H 0.114 0.886
41 H 0.146 0.854
42 H 0.081 0.919
43 H 0.126 0.874
44 H 0.047 0.953
45 H 0.134 0.866
46 H 0.118 0.882
47 H 0.157 0.843
48 H 0.078 0.922
49 H 0.079 0.921
Dipole moment (debyes) X Y Z Total
from point charges -7.860 6.893 -4.422 11.351
hybrid contribution 1.007 -0.426 0.511 1.207
sum -6.852 6.466 -3.912 10.201
Atomic orbital electron populations
1.21677 0.93753 1.02064 1.02031 1.20544 0.97159 0.92688 1.02229
1.19895 0.99630 0.96306 0.93058 1.21251 0.99828 0.95828 0.97282
1.21451 0.99246 0.94535 0.99056 1.21406 0.99988 1.00998 0.92052
1.21269 0.99373 0.94196 0.99582 1.19107 1.00138 0.94502 0.92482
1.21016 1.00353 1.01500 0.88087 0.87727 1.23123 0.98391 0.96962
0.98171 1.21942 0.96475 0.97455 1.01536 0.86733 1.20264 0.82894
0.88037 0.80685 1.90491 1.42040 1.46513 1.72805 1.43517 1.29252
1.14845 1.28628 1.19824 0.88909 0.88948 1.49159 0.87733 1.26405
0.99325 0.98721 0.95856 1.69801 1.15817 1.20759 1.47733 0.85020
0.76774 0.78639 0.78571 1.19717 1.21451 1.17488 1.21181 1.01933
0.86517 0.90417 1.21647 1.03421 0.93104 0.96874 1.23849 0.75466
0.89704 0.79251 1.90636 1.40261 1.42620 1.69155 1.86507 1.63868
1.41020 1.36502 1.23585 1.03783 0.82281 0.97043 0.93546 0.91287
0.91961 0.90047 0.93399 0.84331 0.83513 0.83725 0.84915 0.88565
0.85407 0.91908 0.87362 0.95293 0.86581 0.88228 0.84300 0.92186
0.92127
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -3.37 9.74 71.98 0.70 -2.67 16
2 C -0.09 -2.50 5.38 29.85 0.16 -2.34 16
3 C -0.09 -2.53 5.13 -19.86 -0.10 -2.63 16
4 C -0.12 -2.88 9.68 22.27 0.22 -2.67 16
5 C -0.13 -2.57 10.05 22.27 0.22 -2.35 16
6 C -0.13 -2.75 10.05 22.27 0.22 -2.53 16
7 C -0.13 -3.30 9.30 22.27 0.21 -3.09 16
8 C -0.06 -1.90 5.61 -19.87 -0.11 -2.01 16
9 C -0.09 -3.15 4.65 -11.54 -0.05 -3.20 16
10 H 0.10 3.99 5.48 -2.39 -0.01 3.97 16
11 C -0.13 -4.05 9.56 30.60 0.29 -3.76 16
12 C -0.15 -6.14 4.65 -11.54 -0.05 -6.20 16
13 H 0.11 4.76 7.68 -2.39 -0.02 4.75 16
14 C 0.49 24.08 7.41 87.66 0.65 24.73 16
15 O -0.63 -33.79 15.88 -3.06 -0.05 -33.84 16
16 N -0.45 -22.47 2.52 -635.54 -1.60 -24.07 16
17 C -0.34 -16.59 8.29 84.04 0.70 -15.90 16
18 H 0.11 4.71 7.52 -2.91 -0.02 4.68 16
19 C 0.00 -0.06 5.24 84.92 0.45 0.39 16
20 N -0.90 -48.80 10.91 21.66 0.24 -48.56 16
21 Si 0.99 38.46 29.56 68.60 2.03 40.49 16
22 H -0.27 -10.35 7.11 99.48 0.71 -9.64 16
23 H -0.29 -11.47 7.11 99.48 0.71 -10.76 16
24 H -0.25 -9.05 7.11 99.48 0.71 -8.35 16
25 C 0.12 6.29 4.25 86.38 0.37 6.65 16
26 C -0.11 -4.65 6.14 29.85 0.18 -4.46 16
27 C 0.47 18.92 7.96 71.24 0.57 19.48 16
28 O -0.54 -24.71 15.73 21.97 0.35 -24.37 16
29 O -0.36 -11.77 10.57 -51.44 -0.54 -12.31 16
30 C 0.03 0.62 10.56 113.37 1.20 1.82 16
31 H 0.05 1.23 7.17 -2.39 -0.02 1.21 16
32 H 0.07 1.41 8.14 -2.39 -0.02 1.40 16
33 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16
34 H 0.08 1.98 8.05 -2.38 -0.02 1.96 16
35 H 0.05 1.68 6.95 -2.39 -0.02 1.66 16
36 H 0.14 2.55 8.06 -2.91 -0.02 2.52 16
37 H 0.15 2.10 8.06 -2.91 -0.02 2.08 16
38 H 0.14 2.32 8.06 -2.91 -0.02 2.29 16
39 H 0.13 3.10 6.02 -2.91 -0.02 3.08 16
40 H 0.10 3.02 8.14 -2.39 -0.02 3.00 16
41 H 0.13 3.19 6.18 -2.39 -0.01 3.18 16
42 H 0.27 13.97 8.32 -92.71 -0.77 13.20 16
43 H 0.11 6.03 5.19 -2.39 -0.01 6.02 16
44 H 0.03 1.60 7.44 -2.39 -0.02 1.59 16
45 H 0.12 4.49 8.14 -2.39 -0.02 4.47 16
46 H 0.10 4.02 8.14 -2.39 -0.02 4.00 16
47 H 0.14 2.09 8.14 -2.39 -0.02 2.07 16
48 H 0.06 1.44 8.13 -2.38 -0.02 1.42 16
49 H 0.06 1.45 8.13 -2.39 -0.02 1.44 16
Total: -1.00 -67.93 405.43 7.18 -60.75
By element:
Atomic # 1 Polarization: 41.68 SS G_CDS: 0.96 Total: 42.64 kcal
Atomic # 6 Polarization: -6.54 SS G_CDS: 5.81 Total: -0.74 kcal
Atomic # 7 Polarization: -71.26 SS G_CDS: -1.36 Total: -72.63 kcal
Atomic # 8 Polarization: -70.27 SS G_CDS: -0.25 Total: -70.51 kcal
Atomic # 14 Polarization: 38.46 SS G_CDS: 2.03 Total: 40.49 kcal
Total: -67.93 7.18 -60.75 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000871344063.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -31.556 kcal
(2) G-P(sol) polarization free energy of solvation -67.929 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.485 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.180 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.749 kcal
(6) G-S(sol) free energy of system = (1) + (5) -92.305 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.81 seconds