Wall clock time and date at job start Wed Apr 1 2020 03:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47384 * 2 1 4 4 C 1.50708 * 109.46922 * 240.00333 * 2 1 3 5 5 H 1.08002 * 119.99917 * 237.02654 * 4 2 1 6 6 C 1.37871 * 119.99839 * 57.02202 * 4 2 1 7 7 N 1.31510 * 120.00148 * 6.01875 * 6 4 2 8 8 Si 1.86800 * 119.99724 * 186.01627 * 6 4 2 9 9 H 1.48498 * 109.47180 * 94.98955 * 8 6 4 10 10 H 1.48508 * 109.47037 * 214.98763 * 8 6 4 11 11 H 1.48501 * 109.47500 * 334.98557 * 8 6 4 12 12 C 1.53001 * 109.47633 * 120.00092 * 2 1 3 13 13 N 1.46493 * 109.47008 * 300.00234 * 12 2 1 14 14 C 1.34778 * 119.99967 * 179.97438 * 13 12 2 15 15 O 1.21279 * 120.00061 * 0.02562 * 14 13 12 16 16 C 1.50699 * 120.00094 * 179.97438 * 14 13 12 17 17 C 1.53005 * 109.47174 * 185.23350 * 16 14 13 18 18 C 1.50694 * 110.34535 * 60.20966 * 17 16 14 19 19 O 1.20826 * 119.99921 * 241.80555 * 18 17 16 20 20 O 1.34231 * 120.00109 * 61.80762 * 18 17 16 21 21 C 1.54343 * 110.29861 * 298.07986 * 17 16 14 22 22 C 1.54509 * 102.31580 * 214.54233 * 21 17 16 23 23 C 1.51366 * 105.08968 * 26.66155 * 22 21 17 24 24 C 1.38496 * 130.39143 * 162.74141 * 23 22 21 25 25 C 1.38099 * 120.21637 * 179.68155 * 24 23 22 26 26 C 1.38259 * 119.93705 * 0.02562 * 25 24 23 27 27 C 1.38101 * 119.92873 * 0.02562 * 26 25 24 28 28 C 1.38217 * 109.76026 * 342.46002 * 23 22 21 29 29 H 1.09000 * 109.46379 * 303.56277 * 1 2 3 30 30 H 1.08993 * 109.47032 * 63.55834 * 1 2 3 31 31 H 1.09000 * 109.46928 * 183.56440 * 1 2 3 32 32 H 1.08998 * 109.47577 * 180.02562 * 3 2 1 33 33 H 1.09003 * 109.47430 * 300.00071 * 3 2 1 34 34 H 1.09004 * 109.46804 * 60.00474 * 3 2 1 35 35 H 0.97004 * 119.99874 * 179.97438 * 7 6 4 36 36 H 1.08997 * 109.47518 * 179.97438 * 12 2 1 37 37 H 1.09010 * 109.46807 * 59.99656 * 12 2 1 38 38 H 0.96995 * 120.00162 * 359.97438 * 13 12 2 39 39 H 1.08993 * 109.47155 * 65.23200 * 16 14 13 40 40 H 1.09007 * 109.46996 * 305.23314 * 16 14 13 41 41 H 0.96703 * 117.00099 * 179.97438 * 20 18 17 42 42 H 1.08998 * 110.82544 * 332.96531 * 21 17 16 43 43 H 1.09005 * 110.81497 * 96.31801 * 21 17 16 44 44 H 1.09001 * 110.40930 * 267.72406 * 22 21 17 45 45 H 1.09003 * 110.26703 * 145.52172 * 22 21 17 46 46 H 1.08004 * 119.89055 * 359.66518 * 24 23 22 47 47 H 1.07995 * 120.03407 * 180.02562 * 25 24 23 48 48 H 1.07994 * 120.03748 * 180.02562 * 26 25 24 49 49 H 1.08002 * 119.89061 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6922 -1.5597 -1.1323 6 6 1.6493 -0.2761 -2.4818 7 7 0.9435 0.8264 -2.6077 8 14 2.1329 -1.2538 -3.9983 9 1 1.0271 -2.1734 -4.3678 10 1 2.3991 -0.3222 -5.1238 11 1 3.3572 -2.0429 -3.7089 12 6 2.0401 -0.7212 1.2492 13 7 1.5518 -0.0307 2.4453 14 6 1.8771 -0.4915 3.6694 15 8 2.5744 -1.4775 3.7807 16 6 1.3752 0.2192 4.8999 17 6 1.9894 -0.4226 6.1457 18 6 3.4921 -0.3187 6.1019 19 8 4.1666 -1.3210 6.0803 20 8 4.0814 0.8873 6.0869 21 6 1.5576 -1.9004 6.2549 22 6 1.4419 -2.0979 7.7829 23 6 1.1355 -0.7226 8.3359 24 6 0.6243 -0.3433 9.5660 25 6 0.4316 0.9930 9.8564 26 6 0.7492 1.9561 8.9166 27 6 1.2580 1.5797 7.6892 28 6 1.4533 0.2402 7.3965 29 1 -0.3632 0.5682 0.8564 30 1 -0.3633 0.4576 -0.9201 31 1 -0.3633 -1.0257 0.0639 32 1 3.1300 1.4425 -0.0005 33 1 1.6768 1.9564 -0.8900 34 1 1.6768 1.9563 0.8901 35 1 0.6744 1.1321 -3.4881 36 1 3.1301 -0.7216 1.2489 37 1 1.6767 -1.7490 1.2492 38 1 0.9944 0.7581 2.3564 39 1 0.2893 0.1395 4.9480 40 1 1.6608 1.2702 4.8544 41 1 5.0479 0.9034 6.0590 42 1 0.5967 -2.0605 5.7660 43 1 2.3185 -2.5583 5.8350 44 1 2.3823 -2.4687 8.1906 45 1 0.6303 -2.7879 8.0141 46 1 0.3753 -1.0951 10.3003 47 1 0.0332 1.2855 10.8166 48 1 0.5995 3.0016 9.1421 49 1 1.5055 2.3326 6.9554 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000872873928.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:17:19 Heat of formation + Delta-G solvation = -110.709859 kcal Electronic energy + Delta-G solvation = -31023.609341 eV Core-core repulsion = 26914.980549 eV Total energy + Delta-G solvation = -4108.628792 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.48000 -39.40511 -39.13144 -36.65866 -36.15765 -35.57103 -33.31610 -32.62736 -30.99108 -30.12734 -28.96054 -26.71296 -25.75248 -25.42918 -24.35936 -23.58805 -22.74432 -21.25667 -20.49530 -19.60765 -18.81876 -18.08650 -17.37676 -16.61353 -16.17407 -15.80012 -15.63361 -15.40069 -15.19434 -14.83061 -14.70518 -14.44523 -14.36744 -13.69357 -13.49491 -13.24361 -12.98780 -12.89195 -12.88272 -12.76768 -12.21217 -12.13388 -11.83129 -11.60539 -11.42465 -11.39314 -11.20956 -11.16059 -11.05980 -10.98748 -10.87133 -10.70129 -10.46508 -10.40987 -10.21312 -9.66279 -9.56184 -9.26574 -9.05105 -8.83184 -8.79264 -8.46052 -8.32607 -6.04470 -4.13802 1.01993 1.14921 2.32007 2.96866 3.00278 3.27085 3.34641 3.38375 3.54443 3.62427 4.10290 4.24907 4.39415 4.54634 4.71856 4.77762 4.82969 5.02872 5.09963 5.22255 5.22997 5.27124 5.30880 5.36741 5.53724 5.57246 5.64376 5.80547 5.84636 6.01388 6.11999 6.20979 6.25787 6.30755 6.32002 6.38919 6.48378 6.56703 6.72431 6.75659 6.79903 6.90776 6.99092 7.00727 7.33003 7.52594 7.67851 7.97240 7.99012 8.00790 8.12726 8.36844 8.65025 8.86907 9.51924 10.96972 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.021081 B = 0.002461 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.913488 B =11376.471855 C =11689.507131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.056 3.944 3 C -0.131 4.131 4 C -0.506 4.506 5 H 0.057 0.943 6 C 0.066 3.934 7 N -0.885 5.885 8 Si 0.892 3.108 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.133 3.867 13 N -0.714 5.714 14 C 0.495 3.505 15 O -0.537 6.537 16 C -0.133 4.133 17 C 0.016 3.984 18 C 0.497 3.503 19 O -0.490 6.490 20 O -0.518 6.518 21 C -0.099 4.099 22 C -0.090 4.090 23 C -0.082 4.082 24 C -0.113 4.113 25 C -0.112 4.112 26 C -0.126 4.126 27 C -0.085 4.085 28 C -0.097 4.097 29 H 0.007 0.993 30 H 0.086 0.914 31 H 0.026 0.974 32 H 0.026 0.974 33 H 0.086 0.914 34 H 0.005 0.995 35 H 0.260 0.740 36 H 0.053 0.947 37 H 0.055 0.945 38 H 0.398 0.602 39 H 0.109 0.891 40 H 0.102 0.898 41 H 0.408 0.592 42 H 0.083 0.917 43 H 0.111 0.889 44 H 0.084 0.916 45 H 0.081 0.919 46 H 0.121 0.879 47 H 0.124 0.876 48 H 0.126 0.874 49 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.426 3.360 23.424 23.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.055 3.945 3 C -0.188 4.188 4 C -0.545 4.545 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.524 5.524 8 Si 0.720 3.280 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.199 1.199 12 C 0.010 3.990 13 N -0.365 5.365 14 C 0.280 3.720 15 O -0.415 6.415 16 C -0.173 4.173 17 C 0.014 3.986 18 C 0.338 3.662 19 O -0.375 6.375 20 O -0.330 6.330 21 C -0.136 4.136 22 C -0.127 4.127 23 C -0.082 4.082 24 C -0.131 4.131 25 C -0.129 4.129 26 C -0.144 4.144 27 C -0.103 4.103 28 C -0.097 4.097 29 H 0.026 0.974 30 H 0.104 0.896 31 H 0.045 0.955 32 H 0.045 0.955 33 H 0.105 0.895 34 H 0.024 0.976 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.233 0.767 39 H 0.127 0.873 40 H 0.120 0.880 41 H 0.266 0.734 42 H 0.101 0.899 43 H 0.130 0.870 44 H 0.102 0.898 45 H 0.099 0.901 46 H 0.139 0.861 47 H 0.142 0.858 48 H 0.144 0.856 49 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -2.235 2.455 23.323 23.558 hybrid contribution 0.578 0.078 -0.966 1.128 sum -1.657 2.533 22.357 22.561 Atomic orbital electron populations 1.21820 0.97780 0.98616 1.00735 1.18356 0.92759 0.92766 0.90593 1.21854 0.98585 0.98345 1.00050 1.20997 1.29225 1.14310 0.89938 0.92429 1.24872 0.95016 0.94776 0.98815 1.69814 1.38178 1.21118 1.23249 0.86573 0.78889 0.79960 0.82558 1.20724 1.21284 1.19871 1.21720 0.98092 0.95794 0.83361 1.46285 1.52529 1.31722 1.05950 1.20443 0.81364 0.85239 0.84955 1.90757 1.37965 1.26155 1.86671 1.21829 1.02892 1.01445 0.91150 1.19615 0.87534 0.98129 0.93273 1.22747 0.91089 0.80624 0.71774 1.90685 1.65200 1.37549 1.44068 1.84487 1.28408 1.34136 1.85927 1.22470 1.03541 0.92681 0.94886 1.21239 1.02401 0.93457 0.95565 1.20700 0.97397 0.96179 0.93893 1.20621 1.00457 0.96214 0.95807 1.21096 0.99707 0.92755 0.99392 1.21050 1.00158 0.99610 0.93550 1.20691 0.97948 0.94542 0.97071 1.20110 1.01119 0.93755 0.94699 0.97365 0.89582 0.95525 0.95491 0.89516 0.97577 0.93006 0.92826 0.92662 0.76716 0.87317 0.87987 0.73391 0.89850 0.87015 0.89787 0.90055 0.86065 0.85816 0.85643 0.85627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.91 8.04 37.16 0.30 -2.61 16 2 C 0.06 1.28 0.50 -155.66 -0.08 1.20 16 3 C -0.13 -2.91 8.11 37.16 0.30 -2.61 16 4 C -0.51 -13.20 8.01 -34.44 -0.28 -13.48 16 5 H 0.06 1.53 7.75 -52.49 -0.41 1.12 16 6 C 0.07 1.74 5.11 -17.82 -0.09 1.65 16 7 N -0.89 -23.42 9.38 55.43 0.52 -22.90 16 8 Si 0.89 20.69 29.54 -169.99 -5.02 15.66 16 9 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 10 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 12 C 0.13 2.78 4.50 -4.04 -0.02 2.76 16 13 N -0.71 -12.22 4.98 -60.30 -0.30 -12.52 16 14 C 0.50 8.11 7.30 -10.99 -0.08 8.03 16 15 O -0.54 -10.66 12.91 -5.93 -0.08 -10.74 16 16 C -0.13 -1.61 4.50 -27.88 -0.13 -1.73 16 17 C 0.02 0.20 0.51 -155.78 -0.08 0.12 16 18 C 0.50 7.20 5.62 36.00 0.20 7.40 16 19 O -0.49 -8.58 15.66 -23.36 -0.37 -8.95 16 20 O -0.52 -6.04 13.34 -39.26 -0.52 -6.57 16 21 C -0.10 -1.25 4.68 -25.24 -0.12 -1.37 16 22 C -0.09 -0.94 6.76 -26.76 -0.18 -1.12 16 23 C -0.08 -0.86 6.14 -104.21 -0.64 -1.50 16 24 C -0.11 -1.00 10.04 -39.54 -0.40 -1.40 16 25 C -0.11 -0.89 10.05 -39.62 -0.40 -1.28 16 26 C -0.13 -1.03 10.05 -39.62 -0.40 -1.43 16 27 C -0.08 -0.81 9.77 -39.54 -0.39 -1.19 16 28 C -0.10 -1.06 4.86 -104.20 -0.51 -1.57 16 29 H 0.01 0.14 6.97 -51.93 -0.36 -0.22 16 30 H 0.09 2.12 5.98 -51.93 -0.31 1.81 16 31 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.09 2.14 6.09 -51.93 -0.32 1.83 16 34 H 0.01 0.10 6.86 -51.93 -0.36 -0.25 16 35 H 0.26 6.64 8.31 -40.82 -0.34 6.30 16 36 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.06 1.22 8.14 -51.92 -0.42 0.80 16 38 H 0.40 6.09 6.19 -40.82 -0.25 5.84 16 39 H 0.11 1.09 8.14 -51.93 -0.42 0.66 16 40 H 0.10 1.07 7.97 -51.92 -0.41 0.65 16 41 H 0.41 3.23 9.10 45.56 0.41 3.65 16 42 H 0.08 0.98 7.91 -51.93 -0.41 0.57 16 43 H 0.11 1.74 6.06 -51.93 -0.31 1.42 16 44 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 45 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 46 H 0.12 0.84 8.06 -52.48 -0.42 0.41 16 47 H 0.12 0.69 8.06 -52.49 -0.42 0.26 16 48 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 49 H 0.13 1.05 7.91 -52.49 -0.41 0.64 16 LS Contribution 389.94 15.07 5.88 5.88 Total: -1.00 -31.52 389.94 -9.37 -40.89 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: -6.51 Total: 9.38 kcal Atomic # 6 Polarization: -7.15 SS G_CDS: -2.97 Total: -10.12 kcal Atomic # 7 Polarization: -35.64 SS G_CDS: 0.22 Total: -35.42 kcal Atomic # 8 Polarization: -25.29 SS G_CDS: -0.97 Total: -26.26 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -31.52 -9.37 -40.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872873928.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.823 kcal (2) G-P(sol) polarization free energy of solvation -31.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds