Wall clock time and date at job start Wed Apr 1 2020 03:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47384 * 2 1 4 4 C 1.50708 * 109.46922 * 240.00333 * 2 1 3 5 5 H 1.08002 * 119.99917 * 237.02654 * 4 2 1 6 6 C 1.37871 * 119.99839 * 57.02202 * 4 2 1 7 7 N 1.31510 * 120.00148 * 6.01875 * 6 4 2 8 8 Si 1.86800 * 119.99724 * 186.01627 * 6 4 2 9 9 H 1.48498 * 109.47180 * 94.98955 * 8 6 4 10 10 H 1.48508 * 109.47037 * 214.98763 * 8 6 4 11 11 H 1.48501 * 109.47500 * 334.98557 * 8 6 4 12 12 C 1.53001 * 109.47633 * 120.00092 * 2 1 3 13 13 N 1.46493 * 109.47008 * 300.00234 * 12 2 1 14 14 C 1.34778 * 119.99967 * 179.97438 * 13 12 2 15 15 O 1.21279 * 120.00061 * 0.02562 * 14 13 12 16 16 C 1.50699 * 120.00094 * 179.97438 * 14 13 12 17 17 C 1.53005 * 109.47174 * 185.23350 * 16 14 13 18 18 C 1.50694 * 110.34535 * 60.20966 * 17 16 14 19 19 O 1.20826 * 119.99921 * 241.80555 * 18 17 16 20 20 O 1.34231 * 120.00109 * 61.80762 * 18 17 16 21 21 C 1.54343 * 110.29861 * 298.07986 * 17 16 14 22 22 C 1.54509 * 102.31580 * 214.54233 * 21 17 16 23 23 C 1.51366 * 105.08968 * 26.66155 * 22 21 17 24 24 C 1.38496 * 130.39143 * 162.74141 * 23 22 21 25 25 C 1.38099 * 120.21637 * 179.68155 * 24 23 22 26 26 C 1.38259 * 119.93705 * 0.02562 * 25 24 23 27 27 C 1.38101 * 119.92873 * 0.02562 * 26 25 24 28 28 C 1.38217 * 109.76026 * 342.46002 * 23 22 21 29 29 H 1.09000 * 109.46379 * 303.56277 * 1 2 3 30 30 H 1.08993 * 109.47032 * 63.55834 * 1 2 3 31 31 H 1.09000 * 109.46928 * 183.56440 * 1 2 3 32 32 H 1.08998 * 109.47577 * 180.02562 * 3 2 1 33 33 H 1.09003 * 109.47430 * 300.00071 * 3 2 1 34 34 H 1.09004 * 109.46804 * 60.00474 * 3 2 1 35 35 H 0.97004 * 119.99874 * 179.97438 * 7 6 4 36 36 H 1.08997 * 109.47518 * 179.97438 * 12 2 1 37 37 H 1.09010 * 109.46807 * 59.99656 * 12 2 1 38 38 H 0.96995 * 120.00162 * 359.97438 * 13 12 2 39 39 H 1.08993 * 109.47155 * 65.23200 * 16 14 13 40 40 H 1.09007 * 109.46996 * 305.23314 * 16 14 13 41 41 H 0.96703 * 117.00099 * 179.97438 * 20 18 17 42 42 H 1.08998 * 110.82544 * 332.96531 * 21 17 16 43 43 H 1.09005 * 110.81497 * 96.31801 * 21 17 16 44 44 H 1.09001 * 110.40930 * 267.72406 * 22 21 17 45 45 H 1.09003 * 110.26703 * 145.52172 * 22 21 17 46 46 H 1.08004 * 119.89055 * 359.66518 * 24 23 22 47 47 H 1.07995 * 120.03407 * 180.02562 * 25 24 23 48 48 H 1.07994 * 120.03748 * 180.02562 * 26 25 24 49 49 H 1.08002 * 119.89061 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6922 -1.5597 -1.1323 6 6 1.6493 -0.2761 -2.4818 7 7 0.9435 0.8264 -2.6077 8 14 2.1329 -1.2538 -3.9983 9 1 1.0271 -2.1734 -4.3678 10 1 2.3991 -0.3222 -5.1238 11 1 3.3572 -2.0429 -3.7089 12 6 2.0401 -0.7212 1.2492 13 7 1.5518 -0.0307 2.4453 14 6 1.8771 -0.4915 3.6694 15 8 2.5744 -1.4775 3.7807 16 6 1.3752 0.2192 4.8999 17 6 1.9894 -0.4226 6.1457 18 6 3.4921 -0.3187 6.1019 19 8 4.1666 -1.3210 6.0803 20 8 4.0814 0.8873 6.0869 21 6 1.5576 -1.9004 6.2549 22 6 1.4419 -2.0979 7.7829 23 6 1.1355 -0.7226 8.3359 24 6 0.6243 -0.3433 9.5660 25 6 0.4316 0.9930 9.8564 26 6 0.7492 1.9561 8.9166 27 6 1.2580 1.5797 7.6892 28 6 1.4533 0.2402 7.3965 29 1 -0.3632 0.5682 0.8564 30 1 -0.3633 0.4576 -0.9201 31 1 -0.3633 -1.0257 0.0639 32 1 3.1300 1.4425 -0.0005 33 1 1.6768 1.9564 -0.8900 34 1 1.6768 1.9563 0.8901 35 1 0.6744 1.1321 -3.4881 36 1 3.1301 -0.7216 1.2489 37 1 1.6767 -1.7490 1.2492 38 1 0.9944 0.7581 2.3564 39 1 0.2893 0.1395 4.9480 40 1 1.6608 1.2702 4.8544 41 1 5.0479 0.9034 6.0590 42 1 0.5967 -2.0605 5.7660 43 1 2.3185 -2.5583 5.8350 44 1 2.3823 -2.4687 8.1906 45 1 0.6303 -2.7879 8.0141 46 1 0.3753 -1.0951 10.3003 47 1 0.0332 1.2855 10.8166 48 1 0.5995 3.0016 9.1421 49 1 1.5055 2.3326 6.9554 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000872873928.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:17:19 Heat of formation + Delta-G solvation = -128.547120 kcal Electronic energy + Delta-G solvation = -31024.382823 eV Core-core repulsion = 26914.980549 eV Total energy + Delta-G solvation = -4109.402274 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.44663 -40.50650 -40.27852 -38.19943 -37.26457 -36.55088 -34.99156 -33.53389 -32.69344 -30.98551 -29.72853 -27.96048 -27.55860 -27.29495 -25.88153 -24.53413 -23.46104 -22.02419 -21.73759 -20.70980 -20.51852 -19.16391 -18.48223 -17.97784 -17.46965 -17.25621 -16.64167 -16.55956 -16.27446 -16.16194 -15.99798 -15.55436 -15.27065 -14.91441 -14.83962 -14.59162 -14.26529 -14.08000 -13.89324 -13.82150 -13.59382 -13.31576 -13.15877 -13.04259 -12.74698 -12.63540 -12.61448 -12.55966 -12.28357 -12.25347 -12.14588 -12.00502 -11.96889 -11.70394 -11.52816 -11.48275 -11.25932 -10.81031 -10.67708 -10.38293 -9.92294 -9.72597 -9.50851 -8.04048 -6.18791 0.33027 0.50036 1.24437 1.40575 1.44137 1.52170 1.68218 2.06488 2.28920 2.48197 2.88385 3.19360 3.26912 3.33230 3.61526 3.90967 3.92861 4.14117 4.22267 4.33063 4.36448 4.39177 4.45422 4.48060 4.53741 4.66063 4.71762 4.72068 4.81100 4.88525 4.99359 5.03871 5.06336 5.08766 5.11678 5.18976 5.19940 5.26205 5.38191 5.56100 5.60085 5.62053 5.64404 5.65845 5.67949 5.70079 6.10344 6.16112 6.21851 6.43645 6.66804 6.85226 6.97913 7.33223 7.48652 8.94838 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.021081 B = 0.002461 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.913488 B =11376.471855 C =11689.507131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.052 3.948 3 C -0.121 4.121 4 C -0.530 4.530 5 H 0.041 0.959 6 C 0.030 3.970 7 N -0.897 5.897 8 Si 0.942 3.058 9 H -0.278 1.278 10 H -0.282 1.282 11 H -0.278 1.278 12 C 0.151 3.849 13 N -0.708 5.708 14 C 0.494 3.506 15 O -0.574 6.574 16 C -0.123 4.123 17 C 0.016 3.984 18 C 0.493 3.507 19 O -0.532 6.532 20 O -0.510 6.510 21 C -0.102 4.102 22 C -0.084 4.084 23 C -0.097 4.097 24 C -0.119 4.119 25 C -0.109 4.109 26 C -0.126 4.126 27 C -0.091 4.091 28 C -0.110 4.110 29 H 0.041 0.959 30 H 0.062 0.938 31 H 0.018 0.982 32 H 0.015 0.985 33 H 0.063 0.937 34 H 0.039 0.961 35 H 0.261 0.739 36 H 0.031 0.969 37 H 0.037 0.963 38 H 0.410 0.590 39 H 0.138 0.862 40 H 0.126 0.874 41 H 0.422 0.578 42 H 0.089 0.911 43 H 0.075 0.925 44 H 0.072 0.928 45 H 0.098 0.902 46 H 0.139 0.861 47 H 0.151 0.849 48 H 0.151 0.849 49 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.997 5.302 25.545 26.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.051 3.949 3 C -0.178 4.178 4 C -0.569 4.569 5 H 0.059 0.941 6 C -0.170 4.170 7 N -0.535 5.535 8 Si 0.769 3.231 9 H -0.204 1.204 10 H -0.208 1.208 11 H -0.203 1.203 12 C 0.027 3.973 13 N -0.360 5.360 14 C 0.281 3.719 15 O -0.454 6.454 16 C -0.162 4.162 17 C 0.015 3.985 18 C 0.336 3.664 19 O -0.421 6.421 20 O -0.323 6.323 21 C -0.139 4.139 22 C -0.121 4.121 23 C -0.097 4.097 24 C -0.136 4.136 25 C -0.127 4.127 26 C -0.143 4.143 27 C -0.109 4.109 28 C -0.110 4.110 29 H 0.060 0.940 30 H 0.080 0.920 31 H 0.038 0.962 32 H 0.034 0.966 33 H 0.082 0.918 34 H 0.058 0.942 35 H 0.070 0.930 36 H 0.050 0.950 37 H 0.055 0.945 38 H 0.247 0.753 39 H 0.156 0.844 40 H 0.144 0.856 41 H 0.283 0.717 42 H 0.107 0.893 43 H 0.093 0.907 44 H 0.091 0.909 45 H 0.117 0.883 46 H 0.156 0.844 47 H 0.169 0.831 48 H 0.168 0.832 49 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -3.815 4.440 25.457 26.121 hybrid contribution 1.109 -0.500 -1.558 1.977 sum -2.706 3.941 23.899 24.372 Atomic orbital electron populations 1.21663 0.96917 0.98458 1.00940 1.18347 0.93365 0.92985 0.90170 1.21695 0.97772 0.97866 1.00516 1.21279 1.29435 1.14364 0.91786 0.94083 1.25412 0.95214 0.95561 1.00789 1.69907 1.38399 1.21580 1.23642 0.85798 0.78361 0.78890 0.80066 1.20389 1.20772 1.20334 1.21211 0.96595 0.95082 0.84443 1.46090 1.52834 1.31949 1.05160 1.21217 0.80310 0.84722 0.85678 1.90767 1.39503 1.27980 1.87189 1.21866 1.04345 1.01823 0.88184 1.19618 0.86279 0.98163 0.94478 1.23276 0.92054 0.80546 0.70557 1.90668 1.66310 1.38974 1.46127 1.84450 1.29861 1.32733 1.85244 1.22381 1.02494 0.92585 0.96430 1.21149 1.02537 0.94505 0.93914 1.20763 0.98491 0.95630 0.94809 1.20896 0.99944 0.97370 0.95425 1.21476 0.98589 0.92211 1.00432 1.21403 0.99017 1.01049 0.92863 1.20901 0.97989 0.93978 0.98067 1.20003 1.02471 0.94609 0.93914 0.94011 0.91963 0.96243 0.96616 0.91818 0.94198 0.92973 0.95040 0.94460 0.75282 0.84439 0.85592 0.71700 0.89259 0.90654 0.90947 0.88310 0.84358 0.83131 0.83155 0.84515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.29 8.04 71.98 0.58 -4.71 16 2 C 0.05 2.38 0.50 -52.93 -0.03 2.35 16 3 C -0.12 -5.29 8.11 71.98 0.58 -4.71 16 4 C -0.53 -28.18 8.01 25.60 0.21 -27.97 16 5 H 0.04 2.25 7.75 -2.91 -0.02 2.23 16 6 C 0.03 1.59 5.11 84.65 0.43 2.03 16 7 N -0.90 -47.54 9.38 21.44 0.20 -47.34 16 8 Si 0.94 42.78 29.54 68.60 2.03 44.80 16 9 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 10 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 11 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 12 C 0.15 6.39 4.50 86.38 0.39 6.78 16 13 N -0.71 -23.40 4.98 -463.07 -2.31 -25.71 16 14 C 0.49 15.80 7.30 87.66 0.64 16.44 16 15 O -0.57 -23.37 12.91 7.96 0.10 -23.27 16 16 C -0.12 -2.69 4.50 29.85 0.13 -2.56 16 17 C 0.02 0.39 0.51 -53.00 -0.03 0.37 16 18 C 0.49 14.28 5.62 71.23 0.40 14.68 16 19 O -0.53 -19.48 15.66 26.37 0.41 -19.07 16 20 O -0.51 -11.36 13.34 -51.42 -0.69 -12.04 16 21 C -0.10 -2.62 4.68 31.56 0.15 -2.47 16 22 C -0.08 -1.74 6.76 30.57 0.21 -1.53 16 23 C -0.10 -1.87 6.14 -19.60 -0.12 -1.99 16 24 C -0.12 -1.77 10.04 22.30 0.22 -1.54 16 25 C -0.11 -1.32 10.05 22.24 0.22 -1.10 16 26 C -0.13 -1.57 10.05 22.24 0.22 -1.35 16 27 C -0.09 -1.45 9.77 22.30 0.22 -1.24 16 28 C -0.11 -2.19 4.86 -19.59 -0.10 -2.28 16 29 H 0.04 1.48 6.97 -2.39 -0.02 1.47 16 30 H 0.06 3.03 5.98 -2.39 -0.01 3.01 16 31 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.01 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.06 3.11 6.09 -2.39 -0.01 3.10 16 34 H 0.04 1.43 6.86 -2.38 -0.02 1.41 16 35 H 0.26 13.29 8.31 -92.71 -0.77 12.52 16 36 H 0.03 1.45 8.14 -2.39 -0.02 1.44 16 37 H 0.04 1.70 8.14 -2.38 -0.02 1.68 16 38 H 0.41 11.43 6.19 -92.71 -0.57 10.85 16 39 H 0.14 2.28 8.14 -2.39 -0.02 2.26 16 40 H 0.13 2.19 7.97 -2.38 -0.02 2.18 16 41 H 0.42 6.40 9.10 -74.05 -0.67 5.73 16 42 H 0.09 2.10 7.91 -2.39 -0.02 2.08 16 43 H 0.07 2.51 6.06 -2.38 -0.01 2.49 16 44 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 45 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 46 H 0.14 1.50 8.06 -2.91 -0.02 1.48 16 47 H 0.15 0.98 8.06 -2.91 -0.02 0.95 16 48 H 0.15 1.10 8.06 -2.91 -0.02 1.07 16 49 H 0.14 1.79 7.91 -2.91 -0.02 1.77 16 Total: -1.00 -70.43 389.94 3.83 -66.60 By element: Atomic # 1 Polarization: 27.07 SS G_CDS: -0.26 Total: 26.81 kcal Atomic # 6 Polarization: -15.14 SS G_CDS: 4.34 Total: -10.80 kcal Atomic # 7 Polarization: -70.94 SS G_CDS: -2.11 Total: -73.04 kcal Atomic # 8 Polarization: -54.21 SS G_CDS: -0.17 Total: -54.38 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.80 kcal Total: -70.43 3.83 -66.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872873928.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.944 kcal (2) G-P(sol) polarization free energy of solvation -70.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds