Wall clock time and date at job start Wed Apr 1 2020 02:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.76380 * 2 1 4 4 O 1.43690 * 109.76993 * 239.24791 * 2 1 3 5 5 C 1.44928 * 105.11664 * 209.34312 * 4 2 1 6 6 H 1.09004 * 111.62121 * 270.52022 * 5 4 2 7 7 C 1.53141 * 111.67814 * 144.51392 * 5 4 2 8 8 C 1.53500 * 106.50706 * 272.71940 * 7 5 4 9 9 H 1.09009 * 109.99973 * 102.82357 * 8 7 5 10 10 N 1.46502 * 109.88017 * 223.89929 * 8 7 5 11 11 C 1.34770 * 119.99811 * 272.85199 * 10 8 7 12 12 O 1.21279 * 120.00640 * 359.97438 * 11 10 8 13 13 C 1.50705 * 119.99837 * 179.97438 * 11 10 8 14 14 C 1.50701 * 109.47089 * 179.97438 * 13 11 10 15 15 C 1.37635 * 120.12641 * 265.02060 * 14 13 11 16 16 C 1.38614 * 120.24976 * 179.97438 * 15 14 13 17 17 C 1.38657 * 120.49797 * 359.97438 * 16 15 14 18 18 C 1.37595 * 120.24946 * 0.02562 * 17 16 15 19 19 C 1.40692 * 120.12818 * 85.00177 * 14 13 11 20 20 C 1.41398 * 120.24441 * 0.03621 * 19 14 13 21 21 H 1.07995 * 120.00181 * 334.04030 * 20 19 14 22 22 C 1.39948 * 119.99873 * 154.03471 * 20 19 14 23 23 N 1.30820 * 120.00005 * 343.66140 * 22 20 19 24 24 Si 1.86797 * 120.00056 * 163.65231 * 22 20 19 25 25 H 1.48503 * 109.46957 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.46997 * 120.00368 * 24 22 20 27 27 H 1.48497 * 109.47197 * 240.00502 * 24 22 20 28 28 C 1.53316 * 107.31225 * 343.33224 * 8 7 5 29 29 C 1.53915 * 107.75463 * 1.75143 * 28 8 7 30 30 H 1.08997 * 112.44778 * 250.29490 * 29 28 8 31 31 O 1.43165 * 109.76891 * 120.73238 * 2 1 3 32 32 H 1.08997 * 109.47450 * 299.26953 * 1 2 3 33 33 H 1.09007 * 109.46779 * 59.26843 * 1 2 3 34 34 H 1.08999 * 109.46984 * 179.25962 * 1 2 3 35 35 H 1.08999 * 109.47210 * 180.73647 * 3 2 1 36 36 H 1.09006 * 109.47080 * 300.73338 * 3 2 1 37 37 H 1.09003 * 109.47060 * 60.73150 * 3 2 1 38 38 H 1.08996 * 110.05170 * 153.45531 * 7 5 4 39 39 H 1.08998 * 110.04481 * 31.97963 * 7 5 4 40 40 H 0.96994 * 119.99553 * 92.84103 * 10 8 7 41 41 H 1.09000 * 109.46842 * 59.99725 * 13 11 10 42 42 H 1.08997 * 109.46761 * 299.99611 * 13 11 10 43 43 H 1.08002 * 119.87737 * 359.95438 * 15 14 13 44 44 H 1.08004 * 119.75005 * 180.02562 * 16 15 14 45 45 H 1.08000 * 119.87189 * 180.28027 * 17 16 15 46 46 H 1.08001 * 120.12338 * 179.97438 * 18 17 16 47 47 H 0.96996 * 120.00210 * 179.97438 * 23 22 20 48 48 H 1.08997 * 109.81178 * 121.31450 * 28 8 7 49 49 H 1.09002 * 109.80055 * 242.13492 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0474 1.4399 0.0000 4 8 2.0160 -0.6914 -1.1621 5 6 3.2916 -1.2516 -0.7626 6 1 4.1113 -0.5582 -0.9508 7 6 3.5390 -2.6157 -1.4132 8 6 2.8997 -3.6618 -0.4895 9 1 1.9508 -3.9981 -0.9076 10 7 3.8045 -4.8025 -0.3272 11 6 3.7721 -5.8193 -1.2112 12 8 2.9937 -5.7903 -2.1407 13 6 4.7033 -6.9925 -1.0446 14 6 4.4670 -7.9831 -2.1555 15 6 3.6189 -9.0495 -1.9612 16 6 3.3993 -9.9619 -2.9813 17 6 4.0292 -9.8117 -4.2074 18 6 4.8811 -8.7531 -4.4240 19 6 5.1121 -7.8210 -3.3952 20 6 5.9858 -6.7294 -3.6062 21 1 5.8618 -5.8206 -3.0362 22 6 7.0112 -6.8269 -4.5536 23 7 7.3709 -7.9990 -5.0099 24 14 7.8662 -5.2834 -5.1666 25 1 7.2786 -4.0939 -4.4995 26 1 9.3152 -5.3618 -4.8514 27 1 7.6848 -5.1674 -6.6359 28 6 2.6618 -2.9881 0.8670 29 6 3.1166 -1.5224 0.7493 30 1 4.0246 -1.3214 1.3178 31 8 2.0142 -0.6885 1.1581 32 1 -0.3634 0.5024 0.8964 33 1 -0.3633 0.5252 -0.8834 34 1 -0.3633 -1.0276 -0.0133 35 1 3.1373 1.4344 -0.0132 36 1 1.6760 1.9595 -0.8834 37 1 1.6974 1.9518 0.8965 38 1 4.6098 -2.7992 -1.5009 39 1 3.0716 -2.6506 -2.3972 40 1 4.4270 -4.8258 0.4163 41 1 4.5150 -7.4723 -0.0842 42 1 5.7357 -6.6448 -1.0809 43 1 3.1229 -9.1762 -1.0102 44 1 2.7319 -10.7956 -2.8202 45 1 3.8472 -10.5261 -4.9967 46 1 5.3709 -8.6383 -5.3796 47 1 8.0813 -8.0665 -5.6668 48 1 1.6018 -3.0267 1.1179 49 1 3.2423 -3.4949 1.6379 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885199816.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:51:42 Heat of formation + Delta-G solvation = -116.821319 kcal Electronic energy + Delta-G solvation = -30756.427018 eV Core-core repulsion = 26647.533213 eV Total energy + Delta-G solvation = -4108.893805 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.30402 -39.28372 -37.49852 -36.35571 -35.30568 -33.59549 -33.33863 -31.83092 -31.07878 -29.42468 -28.72718 -27.89495 -27.31753 -25.99088 -24.86228 -21.62082 -21.31931 -21.09501 -20.87707 -20.23594 -19.29165 -17.28596 -17.14463 -16.84343 -16.44211 -15.87713 -15.71365 -15.39571 -15.03289 -14.69571 -14.42256 -14.16685 -13.69566 -13.59331 -13.53394 -13.17464 -13.07906 -12.78487 -12.57902 -12.50415 -12.43711 -12.33326 -12.15780 -11.89447 -11.77129 -11.61531 -11.53469 -11.17152 -11.14682 -11.05200 -10.97454 -10.89733 -10.65478 -10.44392 -10.37036 -9.82043 -9.45555 -9.34628 -9.15508 -9.11219 -8.73972 -7.28223 -7.26180 -6.71453 -4.31722 2.79570 2.99215 3.06465 3.08137 3.12498 3.28480 3.36369 3.59827 3.66747 3.94779 4.14549 4.27871 4.52806 4.58677 4.68599 4.73366 4.81210 5.13074 5.19055 5.22189 5.25848 5.30988 5.36225 5.40697 5.46010 5.52011 5.57477 5.72252 5.80695 5.81799 5.84212 5.95143 6.03215 6.07780 6.14857 6.25426 6.31580 6.45694 6.54028 6.82509 6.84066 6.96360 7.11172 7.32501 7.45249 7.67003 7.90430 7.98261 8.10456 8.16174 8.34316 8.67662 8.88589 8.94447 9.04527 10.22922 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013200 B = 0.002937 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2120.650227 B = 9532.113981 C =10900.333287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.250 3.750 3 C -0.179 4.179 4 O -0.362 6.362 5 C 0.053 3.947 6 H 0.090 0.910 7 C -0.131 4.131 8 C 0.150 3.850 9 H 0.094 0.906 10 N -0.741 5.741 11 C 0.514 3.486 12 O -0.517 6.517 13 C -0.071 4.071 14 C -0.180 4.180 15 C -0.082 4.082 16 C -0.239 4.239 17 C -0.107 4.107 18 C -0.159 4.159 19 C 0.129 3.871 20 C -0.456 4.456 21 H 0.074 0.926 22 C 0.077 3.923 23 N -0.796 5.796 24 Si 0.902 3.098 25 H -0.262 1.262 26 H -0.275 1.275 27 H -0.272 1.272 28 C -0.140 4.140 29 C 0.055 3.945 30 H 0.112 0.888 31 O -0.375 6.375 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.061 0.939 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.395 0.605 41 H 0.075 0.925 42 H 0.096 0.904 43 H 0.084 0.916 44 H 0.085 0.915 45 H 0.086 0.914 46 H 0.116 0.884 47 H 0.279 0.721 48 H 0.087 0.913 49 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.063 15.142 12.054 20.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.174 3.826 3 C -0.237 4.237 4 O -0.283 6.283 5 C -0.005 4.005 6 H 0.108 0.892 7 C -0.170 4.170 8 C 0.044 3.956 9 H 0.112 0.888 10 N -0.396 5.396 11 C 0.302 3.698 12 O -0.390 6.390 13 C -0.111 4.111 14 C -0.182 4.182 15 C -0.100 4.100 16 C -0.259 4.259 17 C -0.126 4.126 18 C -0.179 4.179 19 C 0.126 3.874 20 C -0.485 4.485 21 H 0.092 0.908 22 C -0.141 4.141 23 N -0.421 5.421 24 Si 0.726 3.274 25 H -0.186 1.186 26 H -0.201 1.201 27 H -0.197 1.197 28 C -0.178 4.178 29 C -0.003 4.003 30 H 0.129 0.871 31 O -0.297 6.297 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.080 0.920 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.109 0.891 39 H 0.108 0.892 40 H 0.229 0.771 41 H 0.093 0.907 42 H 0.114 0.886 43 H 0.102 0.898 44 H 0.103 0.897 45 H 0.104 0.896 46 H 0.134 0.866 47 H 0.089 0.911 48 H 0.106 0.894 49 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -5.671 15.031 11.191 19.579 hybrid contribution 0.971 0.722 -0.038 1.210 sum -4.700 15.753 11.153 19.865 Atomic orbital electron populations 1.21919 0.91513 1.03887 1.03036 1.23395 0.94452 0.89830 0.74964 1.22525 1.02116 0.95750 1.03300 1.89287 1.34596 1.70589 1.33826 1.24048 0.87121 0.96339 0.92958 0.89237 1.22451 1.02785 0.90749 1.00969 1.21128 0.94600 0.86085 0.93778 0.88829 1.46378 1.41177 1.20909 1.31153 1.21280 0.84106 0.83206 0.81231 1.90688 1.38836 1.78977 1.30546 1.20273 0.99313 0.92949 0.98531 1.19052 1.06833 0.97734 0.94605 1.20300 0.97495 0.95275 0.96927 1.20310 1.07696 1.02200 0.95670 1.20675 0.98043 0.97941 0.95918 1.21292 1.00250 0.96639 0.99671 1.17339 0.89266 0.91593 0.89176 1.19486 1.10710 1.00152 1.18192 0.90768 1.25874 0.96585 0.96785 0.94808 1.69826 1.24063 1.24335 1.23920 0.86368 0.78896 0.82590 0.79501 1.18550 1.20075 1.19733 1.22702 1.03638 0.93945 0.97529 1.24171 0.90229 0.91044 0.94852 0.87055 1.88806 1.48568 1.60244 1.32044 0.90580 0.90583 0.91086 0.92030 0.90692 0.90792 0.89096 0.89154 0.77065 0.90651 0.88585 0.89789 0.89685 0.89608 0.86570 0.91057 0.89390 0.90025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.26 37.16 0.34 -0.97 16 2 C 0.25 2.61 1.53 -26.73 -0.04 2.57 16 3 C -0.18 -1.49 9.14 37.16 0.34 -1.15 16 4 O -0.36 -4.55 10.82 -59.15 -0.64 -5.19 16 5 C 0.05 0.58 3.96 -25.82 -0.10 0.48 16 6 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 7 C -0.13 -1.70 6.26 -26.40 -0.17 -1.87 16 8 C 0.15 1.95 3.25 -67.51 -0.22 1.73 16 9 H 0.09 1.47 7.57 -51.92 -0.39 1.08 16 10 N -0.74 -10.18 4.97 -53.39 -0.27 -10.44 16 11 C 0.51 9.72 7.46 -10.99 -0.08 9.64 16 12 O -0.52 -12.24 15.69 5.56 0.09 -12.15 16 13 C -0.07 -1.36 5.18 -29.03 -0.15 -1.51 16 14 C -0.18 -4.33 4.43 -103.92 -0.46 -4.79 16 15 C -0.08 -1.90 9.66 -39.66 -0.38 -2.28 16 16 C -0.24 -5.63 10.05 -39.29 -0.39 -6.03 16 17 C -0.11 -2.64 10.02 -39.66 -0.40 -3.04 16 18 C -0.16 -4.29 8.68 -38.87 -0.34 -4.62 16 19 C 0.13 3.44 5.56 -106.83 -0.59 2.84 16 20 C -0.46 -11.91 8.14 -37.74 -0.31 -12.21 16 21 H 0.07 1.88 6.68 -52.49 -0.35 1.53 16 22 C 0.08 1.92 5.16 -17.34 -0.09 1.83 16 23 N -0.80 -20.55 10.97 55.55 0.61 -19.94 16 24 Si 0.90 18.77 29.59 -169.99 -5.03 13.74 16 25 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 26 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 27 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 28 C -0.14 -1.41 6.32 -26.09 -0.16 -1.58 16 29 C 0.05 0.53 4.75 -25.42 -0.12 0.41 16 30 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 31 O -0.38 -4.12 10.23 -59.15 -0.61 -4.73 16 32 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.50 7.94 -51.93 -0.41 0.09 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.09 1.17 7.97 -51.93 -0.41 0.76 16 39 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 40 H 0.40 4.09 8.28 -40.82 -0.34 3.75 16 41 H 0.08 1.20 8.05 -51.93 -0.42 0.79 16 42 H 0.10 1.80 7.06 -51.93 -0.37 1.43 16 43 H 0.08 1.71 8.06 -52.49 -0.42 1.29 16 44 H 0.08 1.77 8.06 -52.48 -0.42 1.35 16 45 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16 46 H 0.12 3.21 6.22 -52.49 -0.33 2.89 16 47 H 0.28 6.55 8.30 -40.82 -0.34 6.21 16 48 H 0.09 0.95 7.87 -51.93 -0.41 0.54 16 49 H 0.08 0.67 7.57 -51.93 -0.39 0.28 16 LS Contribution 395.22 15.07 5.96 5.96 Total: -1.00 -31.77 395.22 -10.82 -42.58 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: -7.61 Total: 10.71 kcal Atomic # 6 Polarization: -17.22 SS G_CDS: -3.33 Total: -20.54 kcal Atomic # 7 Polarization: -30.73 SS G_CDS: 0.34 Total: -30.38 kcal Atomic # 8 Polarization: -20.91 SS G_CDS: -1.16 Total: -22.06 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -5.03 Total: 13.74 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -31.77 -10.82 -42.58 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885199816.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.237 kcal (2) G-P(sol) polarization free energy of solvation -31.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds