Wall clock time and date at job start Wed Apr 1 2020 04:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09009 * 110.25324 * 2 1 4 4 C 1.55120 * 110.37192 * 237.90670 * 2 1 3 5 5 C 1.54326 * 100.85011 * 205.50989 * 4 2 1 6 6 C 1.53441 * 110.49206 * 151.90705 * 5 4 2 7 7 C 1.55528 * 101.92097 * 143.24181 * 6 5 4 8 8 C 1.55038 * 101.05584 * 326.67930 * 7 6 5 9 9 H 1.09001 * 110.30410 * 276.97504 * 8 7 6 10 10 C 1.52998 * 110.38986 * 154.86367 * 8 7 6 11 11 N 1.46492 * 109.47540 * 181.42737 * 10 8 7 12 12 C 1.34772 * 120.00440 * 179.97438 * 11 10 8 13 13 O 1.21558 * 119.99782 * 359.97438 * 12 11 10 14 14 C 1.47881 * 120.00532 * 179.97438 * 12 11 10 15 15 C 1.39918 * 120.02418 * 359.72434 * 14 12 11 16 16 C 1.38326 * 120.35759 * 179.78867 * 15 14 12 17 17 C 1.37749 * 120.41420 * 0.46476 * 16 15 14 18 18 C 1.40752 * 120.04008 * 359.79344 * 17 16 15 19 19 C 1.41434 * 120.17844 * 179.97438 * 18 17 16 20 20 H 1.07998 * 120.00320 * 24.46563 * 19 18 17 21 21 C 1.39943 * 119.99916 * 204.46986 * 19 18 17 22 22 N 1.30826 * 119.99487 * 17.87182 * 21 19 18 23 23 Si 1.86794 * 120.00252 * 197.87077 * 21 19 18 24 24 H 1.48501 * 109.47155 * 89.99710 * 23 21 19 25 25 H 1.48499 * 109.47327 * 210.00006 * 23 21 19 26 26 H 1.48505 * 109.47039 * 330.00023 * 23 21 19 27 27 C 1.38999 * 120.02736 * 180.02562 * 14 12 11 28 28 O 1.42137 * 111.33883 * 272.87355 * 5 4 2 29 29 C 1.53406 * 103.31987 * 33.12477 * 5 4 2 30 30 O 1.43488 * 107.33721 * 339.62510 * 29 5 4 31 31 H 1.09002 * 109.47356 * 299.40410 * 1 2 3 32 32 H 1.08995 * 109.47619 * 59.41087 * 1 2 3 33 33 H 1.09007 * 109.46813 * 179.40811 * 1 2 3 34 34 H 1.08998 * 111.13911 * 87.61376 * 4 2 1 35 35 H 1.09002 * 111.14255 * 323.40453 * 4 2 1 36 36 H 1.08998 * 110.94243 * 261.40292 * 6 5 4 37 37 H 1.09004 * 110.93438 * 25.08339 * 6 5 4 38 38 H 1.08993 * 111.10235 * 208.73213 * 7 6 5 39 39 H 1.09000 * 111.10022 * 84.62002 * 7 6 5 40 40 H 1.09005 * 109.46950 * 301.42862 * 10 8 7 41 41 H 1.09003 * 109.47086 * 61.42124 * 10 8 7 42 42 H 0.97000 * 119.99729 * 359.97438 * 11 10 8 43 43 H 1.07995 * 119.81944 * 359.97438 * 15 14 12 44 44 H 1.08002 * 119.79436 * 180.25493 * 16 15 14 45 45 H 1.08005 * 119.98455 * 179.76216 * 17 16 15 46 46 H 0.97001 * 119.99914 * 180.02562 * 22 21 19 47 47 H 1.07999 * 120.19920 * 359.94844 * 27 14 12 48 48 H 1.08999 * 109.87846 * 99.06173 * 29 5 4 49 49 H 1.09004 * 109.87150 * 220.19053 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9073 1.0227 0.0000 4 6 2.0700 -0.7726 -1.2320 5 6 3.4534 -1.2173 -0.7125 6 6 3.8933 -2.5165 -1.4002 7 6 5.4242 -2.2933 -1.5595 8 6 5.4796 -0.7600 -1.7821 9 1 5.2860 -0.5224 -2.8281 10 6 6.8417 -0.2084 -1.3566 11 7 6.8603 1.2445 -1.5432 12 6 7.9656 1.9499 -1.2317 13 8 8.9470 1.3806 -0.7955 14 6 7.9845 3.4165 -1.4205 15 6 6.8571 4.0716 -1.9280 16 6 6.8657 5.4437 -2.1033 17 6 7.9869 6.1798 -1.7895 18 6 9.1324 5.5376 -1.2829 19 6 10.2854 6.2905 -0.9603 20 1 10.1954 7.3391 -0.7179 21 6 11.5431 5.6767 -0.9553 22 7 11.7161 4.5351 -1.5704 23 14 12.9745 6.4874 -0.0704 24 1 13.0154 6.0184 1.3380 25 1 14.2448 6.1262 -0.7495 26 1 12.8013 7.9621 -0.0963 27 6 9.1244 4.1445 -1.0999 28 8 4.4388 -0.2200 -0.9465 29 6 3.2126 -1.4429 0.7857 30 8 2.0285 -0.7153 1.1427 31 1 -0.3634 0.5045 0.8953 32 1 -0.3634 0.5229 -0.8846 33 1 -0.3633 -1.0277 -0.0106 34 1 2.1671 -0.1157 -2.0963 35 1 1.4417 -1.6329 -1.4629 36 1 3.6893 -3.3805 -0.7678 37 1 3.4121 -2.6248 -2.3723 38 1 5.8110 -2.8299 -2.4258 39 1 5.9586 -2.5778 -0.6531 40 1 7.0164 -0.4421 -0.3063 41 1 7.6238 -0.6629 -1.9648 42 1 6.0769 1.6988 -1.8909 43 1 5.9744 3.5034 -2.1814 44 1 5.9890 5.9406 -2.4918 45 1 7.9874 7.2503 -1.9328 46 1 12.5877 4.1094 -1.5666 47 1 9.9982 3.6424 -0.7117 48 1 3.0679 -2.5052 0.9820 49 1 4.0627 -1.0709 1.3578 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894640878.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:34 Heat of formation + Delta-G solvation = -115.928137 kcal Electronic energy + Delta-G solvation = -30052.384664 eV Core-core repulsion = 25943.529590 eV Total energy + Delta-G solvation = -4108.855074 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.03335 -39.18738 -38.23142 -36.95353 -34.44214 -33.69095 -32.77099 -32.44326 -31.53507 -30.11074 -29.40737 -27.67614 -26.40577 -25.27930 -23.94374 -22.30282 -21.90033 -21.20375 -20.89161 -20.54253 -19.42323 -17.74312 -17.56672 -16.76382 -16.32201 -15.77219 -15.48727 -15.34231 -15.08821 -14.85774 -14.71441 -14.49673 -14.13873 -13.86508 -13.55913 -13.19343 -13.15946 -12.89260 -12.82517 -12.60146 -12.46227 -12.33967 -12.28902 -12.09314 -11.98131 -11.69579 -11.60328 -11.35609 -11.15063 -11.06944 -11.03929 -10.90496 -10.70159 -10.47544 -9.99873 -9.82996 -9.70637 -9.66256 -9.19810 -8.99640 -8.63667 -7.60121 -7.49350 -6.78134 -4.39121 2.24173 2.83787 3.09098 3.12282 3.17781 3.19643 3.51175 3.72275 3.90055 3.94057 3.95264 4.15887 4.26244 4.50453 4.55402 4.66436 4.73179 4.85079 5.00581 5.02355 5.10970 5.14668 5.18120 5.30580 5.35232 5.40928 5.44139 5.45814 5.58542 5.62993 5.65663 5.67898 5.78401 5.85479 5.90998 5.97960 6.12572 6.31326 6.71191 6.74362 6.78067 6.90121 7.01283 7.04844 7.23790 7.40905 7.73241 7.78963 7.95529 8.12788 8.21994 8.53173 8.82537 8.86065 8.98268 10.16681 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.017065 B = 0.002285 C = 0.002139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.405583 B =12248.544710 C =13084.603982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.077 3.923 3 H 0.076 0.924 4 C -0.156 4.156 5 C 0.074 3.926 6 C -0.138 4.138 7 C -0.148 4.148 8 C 0.067 3.933 9 H 0.081 0.919 10 C 0.126 3.874 11 N -0.732 5.732 12 C 0.564 3.436 13 O -0.549 6.549 14 C -0.127 4.127 15 C -0.216 4.216 16 C -0.098 4.098 17 C -0.212 4.212 18 C 0.098 3.902 19 C -0.460 4.460 20 H 0.081 0.919 21 C 0.073 3.927 22 N -0.784 5.784 23 Si 0.911 3.089 24 H -0.266 1.266 25 H -0.277 1.277 26 H -0.262 1.262 27 C -0.092 4.092 28 O -0.348 6.348 29 C 0.051 3.949 30 O -0.379 6.379 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.060 0.940 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.069 0.931 41 H 0.077 0.923 42 H 0.402 0.598 43 H 0.090 0.910 44 H 0.093 0.907 45 H 0.095 0.905 46 H 0.284 0.716 47 H 0.134 0.866 48 H 0.078 0.922 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.244 -14.798 -1.527 22.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.020 3.980 3 H 0.094 0.906 4 C -0.194 4.194 5 C 0.033 3.967 6 C -0.176 4.176 7 C -0.186 4.186 8 C 0.009 3.991 9 H 0.099 0.901 10 C 0.001 3.999 11 N -0.386 5.386 12 C 0.355 3.645 13 O -0.427 6.427 14 C -0.131 4.131 15 C -0.236 4.236 16 C -0.116 4.116 17 C -0.232 4.232 18 C 0.096 3.904 19 C -0.489 4.489 20 H 0.099 0.901 21 C -0.146 4.146 22 N -0.408 5.408 23 Si 0.735 3.265 24 H -0.191 1.191 25 H -0.202 1.202 26 H -0.186 1.186 27 C -0.113 4.113 28 O -0.267 6.267 29 C -0.026 4.026 30 O -0.299 6.299 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.109 0.891 35 H 0.106 0.894 36 H 0.106 0.894 37 H 0.102 0.898 38 H 0.108 0.892 39 H 0.104 0.896 40 H 0.088 0.912 41 H 0.095 0.905 42 H 0.238 0.762 43 H 0.108 0.892 44 H 0.111 0.889 45 H 0.114 0.886 46 H 0.095 0.905 47 H 0.152 0.848 48 H 0.096 0.904 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -16.438 -15.183 -0.998 22.400 hybrid contribution 0.389 0.296 -0.211 0.532 sum -16.049 -14.887 -1.210 21.924 Atomic orbital electron populations 1.21895 0.93746 1.02569 1.02579 1.22996 0.94575 0.96111 0.84287 0.90592 1.23545 0.95080 1.01403 0.99347 1.22793 0.89803 0.88859 0.95209 1.23016 0.95867 0.96901 1.01823 1.23304 0.96204 0.95176 1.03965 1.23427 0.87910 0.92719 0.95040 0.90114 1.21374 0.94349 0.82082 1.02073 1.45819 1.17257 1.06786 1.68721 1.18848 0.81583 0.88067 0.76028 1.90692 1.34371 1.72058 1.45610 1.19463 0.96703 0.90369 1.06537 1.20348 0.96983 0.94487 1.11750 1.20429 0.97038 0.93632 1.00542 1.21099 0.95522 0.98321 1.08217 1.17603 0.92327 0.91715 0.88803 1.19591 0.90563 0.97512 1.41251 0.90071 1.25968 1.00717 0.94632 0.93293 1.69795 1.25528 1.15218 1.30281 0.86270 0.79494 0.80453 0.80290 1.19146 1.20248 1.18582 1.21641 0.96082 0.94134 0.99404 1.88470 1.32968 1.35404 1.69857 1.23387 0.88827 0.96585 0.93752 1.88473 1.42274 1.65033 1.34124 0.91769 0.91169 0.92117 0.89052 0.89432 0.89391 0.89789 0.89207 0.89598 0.91226 0.90464 0.76203 0.89230 0.88926 0.88630 0.90478 0.84840 0.90364 0.90334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.62 37.16 0.36 -0.79 16 2 C 0.08 0.76 4.08 -25.61 -0.10 0.65 16 3 H 0.08 0.84 8.14 -51.92 -0.42 0.41 16 4 C -0.16 -1.26 5.62 -24.92 -0.14 -1.40 16 5 C 0.07 0.67 1.08 -89.49 -0.10 0.57 16 6 C -0.14 -0.90 6.09 -25.16 -0.15 -1.05 16 7 C -0.15 -1.09 6.59 -24.31 -0.16 -1.25 16 8 C 0.07 0.68 3.51 -25.66 -0.09 0.59 16 9 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 10 C 0.13 1.73 5.40 -4.05 -0.02 1.71 16 11 N -0.73 -12.55 5.44 -61.24 -0.33 -12.88 16 12 C 0.56 12.66 7.77 -12.31 -0.10 12.56 16 13 O -0.55 -14.00 16.33 5.31 0.09 -13.92 16 14 C -0.13 -3.09 5.87 -105.04 -0.62 -3.70 16 15 C -0.22 -4.66 9.55 -38.92 -0.37 -5.03 16 16 C -0.10 -2.14 10.01 -39.73 -0.40 -2.53 16 17 C -0.21 -5.11 9.78 -38.81 -0.38 -5.49 16 18 C 0.10 2.63 5.57 -106.87 -0.60 2.04 16 19 C -0.46 -12.24 9.05 -37.73 -0.34 -12.58 16 20 H 0.08 2.05 7.91 -52.49 -0.42 1.64 16 21 C 0.07 1.87 5.14 -17.34 -0.09 1.78 16 22 N -0.78 -20.99 10.95 55.55 0.61 -20.38 16 23 Si 0.91 19.01 29.60 -169.99 -5.03 13.98 16 24 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 25 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 26 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 27 C -0.09 -2.51 8.24 -38.44 -0.32 -2.83 16 28 O -0.35 -4.09 10.38 -35.23 -0.37 -4.45 16 29 C 0.05 0.52 7.22 37.37 0.27 0.79 16 30 O -0.38 -4.52 11.06 -35.23 -0.39 -4.91 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.09 0.56 7.93 -51.93 -0.41 0.15 16 36 H 0.09 0.45 7.32 -51.93 -0.38 0.07 16 37 H 0.08 0.45 7.90 -51.93 -0.41 0.04 16 38 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.09 0.64 8.05 -51.93 -0.42 0.22 16 40 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 42 H 0.40 6.26 6.46 -40.82 -0.26 6.00 16 43 H 0.09 1.63 6.38 -52.49 -0.33 1.29 16 44 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 45 H 0.10 2.14 8.06 -52.48 -0.42 1.72 16 46 H 0.28 6.98 8.30 -40.82 -0.34 6.64 16 47 H 0.13 3.92 5.74 -52.49 -0.30 3.61 16 48 H 0.08 0.62 7.31 -51.93 -0.38 0.24 16 49 H 0.08 0.89 8.07 -51.93 -0.42 0.47 16 LS Contribution 396.03 15.07 5.97 5.97 Total: -1.00 -31.72 396.03 -10.32 -42.03 By element: Atomic # 1 Polarization: 18.03 SS G_CDS: -7.52 Total: 10.51 kcal Atomic # 6 Polarization: -12.61 SS G_CDS: -3.34 Total: -15.96 kcal Atomic # 7 Polarization: -33.54 SS G_CDS: 0.28 Total: -33.26 kcal Atomic # 8 Polarization: -22.61 SS G_CDS: -0.67 Total: -23.28 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -5.03 Total: 13.98 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -31.72 -10.32 -42.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894640878.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.895 kcal (2) G-P(sol) polarization free energy of solvation -31.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds