Wall clock time and date at job start Wed Apr 1 2020 04:34:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 H 1.09003 * 110.53710 * 2 1
4 4 C 1.55154 * 110.60619 * 237.16194 * 2 1 3
5 5 C 1.54069 * 101.91239 * 204.89540 * 4 2 1
6 6 C 1.53651 * 110.23171 * 261.32728 * 5 4 2
7 7 C 1.55472 * 101.99416 * 259.12909 * 6 5 4
8 8 C 1.55020 * 101.02981 * 326.48416 * 7 6 5
9 9 H 1.09000 * 110.30304 * 277.10128 * 8 7 6
10 10 C 1.52995 * 110.30608 * 155.04115 * 8 7 6
11 11 N 1.46501 * 109.47224 * 180.02562 * 10 8 7
12 12 C 1.34777 * 120.00566 * 179.97438 * 11 10 8
13 13 O 1.21548 * 119.99323 * 0.02562 * 12 11 10
14 14 C 1.47879 * 120.00599 * 179.97438 * 12 11 10
15 15 C 1.39925 * 120.02371 * 0.02562 * 14 12 11
16 16 C 1.38325 * 120.35975 * 180.02562 * 15 14 12
17 17 C 1.37753 * 120.41125 * 359.97438 * 16 15 14
18 18 C 1.40751 * 120.04066 * 0.02562 * 17 16 15
19 19 C 1.41439 * 120.17671 * 180.02562 * 18 17 16
20 20 H 1.08003 * 119.99981 * 150.19441 * 19 18 17
21 21 C 1.39939 * 119.99990 * 330.18867 * 19 18 17
22 22 N 1.30826 * 120.00080 * 161.72808 * 21 19 18
23 23 Si 1.86804 * 119.99720 * 341.72633 * 21 19 18
24 24 H 1.48497 * 109.47002 * 95.41704 * 23 21 19
25 25 H 1.48503 * 109.46720 * 215.40995 * 23 21 19
26 26 H 1.48489 * 109.47532 * 335.41277 * 23 21 19
27 27 C 1.38996 * 120.02695 * 179.72727 * 14 12 11
28 28 O 1.42376 * 111.03359 * 141.07081 * 5 4 2
29 29 C 1.53356 * 104.93027 * 20.49412 * 5 4 2
30 30 O 1.43960 * 107.19400 * 2.04491 * 29 5 4
31 31 H 1.09005 * 109.47084 * 182.83650 * 1 2 3
32 32 H 1.09005 * 109.47534 * 302.83712 * 1 2 3
33 33 H 1.09002 * 109.47474 * 62.83984 * 1 2 3
34 34 H 1.08995 * 110.94513 * 86.73754 * 4 2 1
35 35 H 1.09001 * 110.93885 * 323.05019 * 4 2 1
36 36 H 1.09003 * 110.92421 * 17.30687 * 6 5 4
37 37 H 1.09005 * 110.92167 * 140.95470 * 6 5 4
38 38 H 1.09001 * 111.10775 * 84.42563 * 7 6 5
39 39 H 1.09005 * 111.10938 * 208.54312 * 7 6 5
40 40 H 1.09002 * 109.47286 * 299.99582 * 10 8 7
41 41 H 1.09002 * 109.47432 * 60.00364 * 10 8 7
42 42 H 0.97009 * 119.99752 * 0.02562 * 11 10 8
43 43 H 1.08001 * 119.81728 * 359.97438 * 15 14 12
44 44 H 1.08000 * 119.79922 * 179.97438 * 16 15 14
45 45 H 1.08007 * 119.97714 * 180.02562 * 17 16 15
46 46 H 0.96995 * 119.99918 * 179.97438 * 22 21 19
47 47 H 1.07996 * 120.20229 * 0.02562 * 27 14 12
48 48 H 1.08997 * 109.92117 * 121.48669 * 29 5 4
49 49 H 1.08997 * 109.92085 * 242.59915 * 29 5 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.9123 1.0208 0.0000
4 6 2.0760 -0.7875 -1.2202
5 6 3.4679 -1.2212 -0.7218
6 6 4.5462 -0.2699 -1.2632
7 6 5.1359 -1.0893 -2.4456
8 6 5.0043 -2.5342 -1.8998
9 1 5.8457 -2.7706 -1.2484
10 6 4.9316 -3.5338 -3.0558
11 7 4.8071 -4.8917 -2.5201
12 6 4.7256 -5.9427 -3.3599
13 8 4.7559 -5.7639 -4.5618
14 6 4.6004 -7.3134 -2.8192
15 6 4.5660 -7.5198 -1.4357
16 6 4.4496 -8.7990 -0.9224
17 6 4.3657 -9.8842 -1.7667
18 6 4.3987 -9.6962 -3.1613
19 6 4.3122 -10.8084 -4.0308
20 1 3.8669 -10.6962 -5.0084
21 6 4.8038 -12.0540 -3.6247
22 7 4.4213 -13.1415 -4.2432
23 14 6.0061 -12.1640 -2.1992
24 1 5.2635 -12.4552 -0.9467
25 1 6.9837 -13.2511 -2.4591
26 1 6.7267 -10.8733 -2.0587
27 6 4.5106 -8.3971 -3.6850
28 8 3.7753 -2.5434 -1.1512
29 6 3.3857 -1.1318 0.8069
30 8 2.0430 -0.7320 1.1383
31 1 -0.3633 -1.0265 0.0509
32 1 -0.3634 0.5573 0.8635
33 1 -0.3634 0.4691 -0.9143
34 1 2.1589 -0.1425 -2.0949
35 1 1.4516 -1.6547 -1.4353
36 1 4.1023 0.6605 -1.6173
37 1 5.3071 -0.0738 -0.5076
38 1 4.5426 -0.9557 -3.3501
39 1 6.1799 -0.8295 -2.6211
40 1 4.0652 -3.3081 -3.6775
41 1 5.8385 -3.4616 -3.6562
42 1 4.7825 -5.0343 -1.5609
43 1 4.6315 -6.6759 -0.7650
44 1 4.4244 -8.9480 0.1470
45 1 4.2746 -10.8800 -1.3584
46 1 4.7623 -14.0049 -3.9619
47 1 4.5323 -8.2421 -4.7535
48 1 3.6030 -2.1046 1.2480
49 1 4.0954 -0.3906 1.1743
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000894640879.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:34:38
Heat of formation + Delta-G solvation = -114.457040 kcal
Electronic energy + Delta-G solvation = -29804.498022 eV
Core-core repulsion = 25695.706740 eV
Total energy + Delta-G solvation = -4108.791282 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.177 amu
Computer time = 0.85 seconds
Orbital eigenvalues (eV)
-41.09585 -39.42576 -38.38517 -37.25759 -34.62265 -33.66824 -32.89014 -32.39818
-31.68032 -30.53730 -29.99043 -27.78206 -26.54013 -25.20736 -24.01798 -22.55675
-22.23089 -21.34586 -20.72135 -20.59011 -19.90324 -17.95032 -17.45280 -16.76069
-16.40923 -16.16201 -15.80584 -15.63572 -15.46125 -14.79400 -14.67062 -14.58708
-14.38087 -13.86051 -13.64367 -13.54428 -13.34772 -12.96832 -12.75719 -12.73846
-12.69172 -12.53378 -12.48871 -12.16928 -11.98503 -11.91033 -11.67948 -11.58206
-11.45111 -11.11823 -11.02700 -11.00613 -10.76309 -10.52791 -10.25172 -9.99694
-9.70789 -9.68820 -9.42106 -9.13350 -8.83200 -7.84647 -7.73897 -6.99176
-4.53589 1.93741 2.53650 3.06670 3.13388 3.18420 3.26988 3.42340
3.54855 3.64512 3.94441 3.96562 4.02375 4.22240 4.41138 4.44887
4.50689 4.66278 4.70572 4.88932 4.92057 4.96648 5.07787 5.10265
5.24676 5.26489 5.29875 5.34083 5.37867 5.40009 5.46334 5.50783
5.57820 5.70741 5.71796 5.80817 5.83811 5.90878 6.06119 6.40558
6.48830 6.62701 6.68500 6.70542 6.77116 6.99697 7.22966 7.43000
7.52207 7.76685 7.82155 8.03426 8.29710 8.54936 8.70306 8.74582
10.03055
Molecular weight = 345.18amu
Principal moments of inertia in cm(-1)
A = 0.018780 B = 0.002131 C = 0.002055
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1490.620923 B =13137.801459 C =13624.488287
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C 0.072 3.928
3 H 0.070 0.930
4 C -0.154 4.154
5 C 0.076 3.924
6 C -0.142 4.142
7 C -0.147 4.147
8 C 0.065 3.935
9 H 0.081 0.919
10 C 0.125 3.875
11 N -0.729 5.729
12 C 0.564 3.436
13 O -0.551 6.551
14 C -0.108 4.108
15 C -0.214 4.214
16 C -0.083 4.083
17 C -0.222 4.222
18 C 0.081 3.919
19 C -0.443 4.443
20 H 0.093 0.907
21 C 0.083 3.917
22 N -0.804 5.804
23 Si 0.911 3.089
24 H -0.269 1.269
25 H -0.290 1.290
26 H -0.244 1.244
27 C -0.136 4.136
28 O -0.349 6.349
29 C 0.044 3.956
30 O -0.371 6.371
31 H 0.067 0.933
32 H 0.063 0.937
33 H 0.071 0.929
34 H 0.085 0.915
35 H 0.091 0.909
36 H 0.087 0.913
37 H 0.082 0.918
38 H 0.085 0.915
39 H 0.089 0.911
40 H 0.071 0.929
41 H 0.079 0.921
42 H 0.404 0.596
43 H 0.096 0.904
44 H 0.099 0.901
45 H 0.103 0.897
46 H 0.286 0.714
47 H 0.115 0.885
48 H 0.095 0.905
49 H 0.067 0.933
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.104 26.285 9.052 27.800
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C 0.015 3.985
3 H 0.088 0.912
4 C -0.192 4.192
5 C 0.036 3.964
6 C -0.180 4.180
7 C -0.185 4.185
8 C 0.008 3.992
9 H 0.099 0.901
10 C 0.001 3.999
11 N -0.383 5.383
12 C 0.354 3.646
13 O -0.429 6.429
14 C -0.111 4.111
15 C -0.234 4.234
16 C -0.102 4.102
17 C -0.241 4.241
18 C 0.078 3.922
19 C -0.471 4.471
20 H 0.111 0.889
21 C -0.136 4.136
22 N -0.428 5.428
23 Si 0.737 3.263
24 H -0.196 1.196
25 H -0.217 1.217
26 H -0.167 1.167
27 C -0.156 4.156
28 O -0.268 6.268
29 C -0.033 4.033
30 O -0.290 6.290
31 H 0.086 0.914
32 H 0.082 0.918
33 H 0.090 0.910
34 H 0.103 0.897
35 H 0.110 0.890
36 H 0.106 0.894
37 H 0.101 0.899
38 H 0.104 0.896
39 H 0.108 0.892
40 H 0.089 0.911
41 H 0.097 0.903
42 H 0.240 0.760
43 H 0.114 0.886
44 H 0.117 0.883
45 H 0.121 0.879
46 H 0.097 0.903
47 H 0.133 0.867
48 H 0.114 0.886
49 H 0.085 0.915
Dipole moment (debyes) X Y Z Total
from point charges -0.131 25.914 8.320 27.217
hybrid contribution 0.740 -0.124 0.874 1.152
sum 0.609 25.790 9.194 27.387
Atomic orbital electron populations
1.21780 0.92849 1.03391 1.02437 1.23162 0.95562 0.94978 0.84823
0.91245 1.23427 0.95851 1.01469 0.98444 1.22837 0.95460 0.83798
0.94332 1.23173 0.97797 0.98757 0.98224 1.23276 1.02924 0.93438
0.98838 1.23385 0.87797 0.95177 0.92859 0.90082 1.21402 1.02724
0.81176 0.94589 1.45825 1.76430 1.05440 1.10585 1.18783 0.74771
0.85218 0.85822 1.90691 1.50593 1.86386 1.15270 1.19413 1.06343
0.91155 0.94188 1.20402 1.13953 0.96116 0.92940 1.20514 0.99081
0.92773 0.97793 1.21177 1.11601 0.97402 0.93927 1.17707 0.89877
0.92720 0.91874 1.19514 1.33595 0.91021 1.02940 0.88855 1.26169
0.95782 0.94738 0.96935 1.69692 1.35456 0.99390 1.38254 0.86310
0.80363 0.79322 0.80276 1.19554 1.21690 1.16698 1.21263 1.04621
0.91261 0.98471 1.88504 1.40833 1.25805 1.71693 1.23441 0.84916
1.01442 0.93550 1.89030 1.27928 1.73771 1.38258 0.91428 0.91794
0.90991 0.89661 0.88993 0.89437 0.89917 0.89647 0.89221 0.91057
0.90340 0.76014 0.88557 0.88276 0.87892 0.90341 0.86684 0.88643
0.91534
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.02 9.66 37.15 0.36 -0.66 16
2 C 0.07 0.57 3.98 -25.59 -0.10 0.46 16
3 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16
4 C -0.15 -1.24 5.81 -25.03 -0.15 -1.39 16
5 C 0.08 0.64 1.21 -89.54 -0.11 0.53 16
6 C -0.14 -0.82 5.97 -25.08 -0.15 -0.97 16
7 C -0.15 -0.94 6.58 -24.35 -0.16 -1.10 16
8 C 0.07 0.60 3.49 -25.67 -0.09 0.51 16
9 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16
10 C 0.13 1.53 5.39 -4.04 -0.02 1.51 16
11 N -0.73 -11.15 5.46 -61.24 -0.33 -11.48 16
12 C 0.56 11.30 7.77 -12.31 -0.10 11.20 16
13 O -0.55 -12.55 16.33 5.32 0.09 -12.47 16
14 C -0.11 -2.35 5.87 -105.04 -0.62 -2.97 16
15 C -0.21 -4.25 9.55 -38.92 -0.37 -4.63 16
16 C -0.08 -1.74 10.01 -39.73 -0.40 -2.13 16
17 C -0.22 -5.24 7.17 -38.81 -0.28 -5.52 16
18 C 0.08 2.08 5.10 -106.87 -0.55 1.53 16
19 C -0.44 -12.02 9.57 -37.73 -0.36 -12.38 16
20 H 0.09 2.66 8.06 -52.48 -0.42 2.24 16
21 C 0.08 2.17 5.40 -17.34 -0.09 2.07 16
22 N -0.80 -21.34 13.93 55.55 0.77 -20.57 16
23 Si 0.91 20.53 24.52 -169.99 -4.17 16.36 16
24 H -0.27 -5.84 6.71 56.52 0.38 -5.46 16
25 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16
26 H -0.24 -5.62 6.86 56.52 0.39 -5.24 16
27 C -0.14 -3.33 9.34 -38.44 -0.36 -3.69 16
28 O -0.35 -3.80 10.33 -35.23 -0.36 -4.16 16
29 C 0.04 0.38 7.19 37.34 0.27 0.65 16
30 O -0.37 -3.92 11.27 -35.23 -0.40 -4.31 16
31 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16
32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16
33 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16
34 H 0.08 0.54 7.58 -51.93 -0.39 0.14 16
35 H 0.09 0.91 8.01 -51.93 -0.42 0.49 16
36 H 0.09 0.40 7.56 -51.93 -0.39 0.00 16
37 H 0.08 0.40 7.51 -51.93 -0.39 0.01 16
38 H 0.08 0.55 8.05 -51.93 -0.42 0.13 16
39 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16
40 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16
41 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16
42 H 0.40 5.58 6.49 -40.82 -0.26 5.32 16
43 H 0.10 1.58 6.38 -52.49 -0.33 1.24 16
44 H 0.10 1.76 8.06 -52.49 -0.42 1.33 16
45 H 0.10 2.41 4.72 -52.48 -0.25 2.16 16
46 H 0.29 6.85 8.30 -40.82 -0.34 6.51 16
47 H 0.12 2.87 7.64 -52.49 -0.40 2.47 16
48 H 0.10 0.91 7.99 -51.93 -0.42 0.49 16
49 H 0.07 0.46 7.34 -51.93 -0.38 0.08 16
LS Contribution 390.39 15.07 5.88 5.88
Total: -1.00 -31.08 390.39 -9.24 -40.32
By element:
Atomic # 1 Polarization: 14.86 SS G_CDS: -7.45 Total: 7.40 kcal
Atomic # 6 Polarization: -13.70 SS G_CDS: -3.27 Total: -16.97 kcal
Atomic # 7 Polarization: -32.49 SS G_CDS: 0.44 Total: -32.06 kcal
Atomic # 8 Polarization: -20.27 SS G_CDS: -0.67 Total: -20.94 kcal
Atomic # 14 Polarization: 20.53 SS G_CDS: -4.17 Total: 16.36 kcal
Total LS contribution 5.88 Total: 5.88 kcal
Total: -31.08 -9.24 -40.32 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000894640879.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -74.137 kcal
(2) G-P(sol) polarization free energy of solvation -31.080 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.217 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.240 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.320 kcal
(6) G-S(sol) free energy of system = (1) + (5) -114.457 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.85 seconds