Wall clock time and date at job start Wed Apr 1 2020 04:34:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 H 1.09003 * 110.53710 * 2 1
4 4 C 1.55154 * 110.60619 * 237.16194 * 2 1 3
5 5 C 1.54069 * 101.91239 * 204.89540 * 4 2 1
6 6 C 1.53651 * 110.23171 * 261.32728 * 5 4 2
7 7 C 1.55472 * 101.99416 * 259.12909 * 6 5 4
8 8 C 1.55020 * 101.02981 * 326.48416 * 7 6 5
9 9 H 1.09000 * 110.30304 * 277.10128 * 8 7 6
10 10 C 1.52995 * 110.30608 * 155.04115 * 8 7 6
11 11 N 1.46501 * 109.47224 * 180.02562 * 10 8 7
12 12 C 1.34777 * 120.00566 * 179.97438 * 11 10 8
13 13 O 1.21548 * 119.99323 * 0.02562 * 12 11 10
14 14 C 1.47879 * 120.00599 * 179.97438 * 12 11 10
15 15 C 1.39925 * 120.02371 * 0.02562 * 14 12 11
16 16 C 1.38325 * 120.35975 * 180.02562 * 15 14 12
17 17 C 1.37753 * 120.41125 * 359.97438 * 16 15 14
18 18 C 1.40751 * 120.04066 * 0.02562 * 17 16 15
19 19 C 1.41439 * 120.17671 * 180.02562 * 18 17 16
20 20 H 1.08003 * 119.99981 * 150.19441 * 19 18 17
21 21 C 1.39939 * 119.99990 * 330.18867 * 19 18 17
22 22 N 1.30826 * 120.00080 * 161.72808 * 21 19 18
23 23 Si 1.86804 * 119.99720 * 341.72633 * 21 19 18
24 24 H 1.48497 * 109.47002 * 95.41704 * 23 21 19
25 25 H 1.48503 * 109.46720 * 215.40995 * 23 21 19
26 26 H 1.48489 * 109.47532 * 335.41277 * 23 21 19
27 27 C 1.38996 * 120.02695 * 179.72727 * 14 12 11
28 28 O 1.42376 * 111.03359 * 141.07081 * 5 4 2
29 29 C 1.53356 * 104.93027 * 20.49412 * 5 4 2
30 30 O 1.43960 * 107.19400 * 2.04491 * 29 5 4
31 31 H 1.09005 * 109.47084 * 182.83650 * 1 2 3
32 32 H 1.09005 * 109.47534 * 302.83712 * 1 2 3
33 33 H 1.09002 * 109.47474 * 62.83984 * 1 2 3
34 34 H 1.08995 * 110.94513 * 86.73754 * 4 2 1
35 35 H 1.09001 * 110.93885 * 323.05019 * 4 2 1
36 36 H 1.09003 * 110.92421 * 17.30687 * 6 5 4
37 37 H 1.09005 * 110.92167 * 140.95470 * 6 5 4
38 38 H 1.09001 * 111.10775 * 84.42563 * 7 6 5
39 39 H 1.09005 * 111.10938 * 208.54312 * 7 6 5
40 40 H 1.09002 * 109.47286 * 299.99582 * 10 8 7
41 41 H 1.09002 * 109.47432 * 60.00364 * 10 8 7
42 42 H 0.97009 * 119.99752 * 0.02562 * 11 10 8
43 43 H 1.08001 * 119.81728 * 359.97438 * 15 14 12
44 44 H 1.08000 * 119.79922 * 179.97438 * 16 15 14
45 45 H 1.08007 * 119.97714 * 180.02562 * 17 16 15
46 46 H 0.96995 * 119.99918 * 179.97438 * 22 21 19
47 47 H 1.07996 * 120.20229 * 0.02562 * 27 14 12
48 48 H 1.08997 * 109.92117 * 121.48669 * 29 5 4
49 49 H 1.08997 * 109.92085 * 242.59915 * 29 5 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.9123 1.0208 0.0000
4 6 2.0760 -0.7875 -1.2202
5 6 3.4679 -1.2212 -0.7218
6 6 4.5462 -0.2699 -1.2632
7 6 5.1359 -1.0893 -2.4456
8 6 5.0043 -2.5342 -1.8998
9 1 5.8457 -2.7706 -1.2484
10 6 4.9316 -3.5338 -3.0558
11 7 4.8071 -4.8917 -2.5201
12 6 4.7256 -5.9427 -3.3599
13 8 4.7559 -5.7639 -4.5618
14 6 4.6004 -7.3134 -2.8192
15 6 4.5660 -7.5198 -1.4357
16 6 4.4496 -8.7990 -0.9224
17 6 4.3657 -9.8842 -1.7667
18 6 4.3987 -9.6962 -3.1613
19 6 4.3122 -10.8084 -4.0308
20 1 3.8669 -10.6962 -5.0084
21 6 4.8038 -12.0540 -3.6247
22 7 4.4213 -13.1415 -4.2432
23 14 6.0061 -12.1640 -2.1992
24 1 5.2635 -12.4552 -0.9467
25 1 6.9837 -13.2511 -2.4591
26 1 6.7267 -10.8733 -2.0587
27 6 4.5106 -8.3971 -3.6850
28 8 3.7753 -2.5434 -1.1512
29 6 3.3857 -1.1318 0.8069
30 8 2.0430 -0.7320 1.1383
31 1 -0.3633 -1.0265 0.0509
32 1 -0.3634 0.5573 0.8635
33 1 -0.3634 0.4691 -0.9143
34 1 2.1589 -0.1425 -2.0949
35 1 1.4516 -1.6547 -1.4353
36 1 4.1023 0.6605 -1.6173
37 1 5.3071 -0.0738 -0.5076
38 1 4.5426 -0.9557 -3.3501
39 1 6.1799 -0.8295 -2.6211
40 1 4.0652 -3.3081 -3.6775
41 1 5.8385 -3.4616 -3.6562
42 1 4.7825 -5.0343 -1.5609
43 1 4.6315 -6.6759 -0.7650
44 1 4.4244 -8.9480 0.1470
45 1 4.2746 -10.8800 -1.3584
46 1 4.7623 -14.0049 -3.9619
47 1 4.5323 -8.2421 -4.7535
48 1 3.6030 -2.1046 1.2480
49 1 4.0954 -0.3906 1.1743
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000894640879.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:34:36
Heat of formation + Delta-G solvation = -135.587211 kcal
Electronic energy + Delta-G solvation = -29805.414295 eV
Core-core repulsion = 25695.706740 eV
Total energy + Delta-G solvation = -4109.707555 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.177 amu
Computer time = 1.00 seconds
Orbital eigenvalues (eV)
-41.75444 -40.95288 -39.27805 -38.87917 -35.94055 -35.54564 -33.49701 -33.09998
-32.79166 -32.04558 -31.66100 -28.73803 -27.20102 -27.00771 -25.13096 -23.77528
-22.96945 -22.46254 -21.99904 -21.49527 -21.27540 -19.63817 -18.16567 -18.09334
-17.44084 -17.25191 -17.16398 -16.83599 -16.47482 -16.23401 -15.93799 -15.55014
-15.43946 -15.30456 -14.86803 -14.58375 -14.46398 -14.31630 -14.14346 -13.85100
-13.70523 -13.43345 -13.32096 -13.23808 -13.06323 -12.85411 -12.73356 -12.69522
-12.52313 -12.32517 -12.30605 -12.05372 -11.77407 -11.67755 -11.57518 -11.52870
-11.21189 -10.90708 -10.85097 -10.35223 -10.21069 -9.64610 -9.56828 -8.92667
-6.56454 0.16350 0.72666 1.25043 1.40871 1.48057 1.93254 2.12146
2.13097 2.60043 2.64271 2.84302 3.41343 3.44061 3.46678 3.62189
3.79658 3.85671 3.89827 4.08272 4.09791 4.23935 4.27552 4.31504
4.37721 4.40171 4.51625 4.52678 4.56605 4.65830 4.70332 4.74260
4.82849 4.84810 4.87546 4.89702 4.90185 4.99624 5.02763 5.11321
5.14451 5.21415 5.25830 5.37918 5.41142 5.63471 5.70306 5.83008
5.88862 6.08589 6.08945 6.28313 6.53934 6.64532 6.72894 7.20423
8.16313
Molecular weight = 345.18amu
Principal moments of inertia in cm(-1)
A = 0.018780 B = 0.002131 C = 0.002055
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1490.620923 B =13137.801459 C =13624.488287
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C 0.070 3.930
3 H 0.092 0.908
4 C -0.154 4.154
5 C 0.070 3.930
6 C -0.133 4.133
7 C -0.142 4.142
8 C 0.069 3.931
9 H 0.097 0.903
10 C 0.121 3.879
11 N -0.708 5.708
12 C 0.561 3.439
13 O -0.587 6.587
14 C -0.113 4.113
15 C -0.183 4.183
16 C -0.082 4.082
17 C -0.225 4.225
18 C 0.065 3.935
19 C -0.488 4.488
20 H 0.050 0.950
21 C 0.045 3.955
22 N -0.848 5.848
23 Si 0.968 3.032
24 H -0.247 1.247
25 H -0.276 1.276
26 H -0.251 1.251
27 C -0.167 4.167
28 O -0.376 6.376
29 C 0.041 3.959
30 O -0.399 6.399
31 H 0.049 0.951
32 H 0.066 0.934
33 H 0.089 0.911
34 H 0.104 0.896
35 H 0.065 0.935
36 H 0.105 0.895
37 H 0.099 0.901
38 H 0.083 0.917
39 H 0.111 0.889
40 H 0.057 0.943
41 H 0.085 0.915
42 H 0.414 0.586
43 H 0.144 0.856
44 H 0.147 0.853
45 H 0.107 0.893
46 H 0.296 0.704
47 H 0.090 0.910
48 H 0.082 0.918
49 H 0.089 0.911
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.605 29.723 12.648 32.342
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C 0.013 3.987
3 H 0.110 0.890
4 C -0.192 4.192
5 C 0.030 3.970
6 C -0.170 4.170
7 C -0.179 4.179
8 C 0.011 3.989
9 H 0.115 0.885
10 C -0.002 4.002
11 N -0.360 5.360
12 C 0.350 3.650
13 O -0.469 6.469
14 C -0.116 4.116
15 C -0.203 4.203
16 C -0.100 4.100
17 C -0.244 4.244
18 C 0.062 3.938
19 C -0.517 4.517
20 H 0.068 0.932
21 C -0.170 4.170
22 N -0.474 5.474
23 Si 0.790 3.210
24 H -0.172 1.172
25 H -0.203 1.203
26 H -0.175 1.175
27 C -0.187 4.187
28 O -0.296 6.296
29 C -0.036 4.036
30 O -0.320 6.320
31 H 0.068 0.932
32 H 0.085 0.915
33 H 0.108 0.892
34 H 0.122 0.878
35 H 0.084 0.916
36 H 0.124 0.876
37 H 0.117 0.883
38 H 0.101 0.899
39 H 0.129 0.871
40 H 0.076 0.924
41 H 0.104 0.896
42 H 0.252 0.748
43 H 0.162 0.838
44 H 0.164 0.836
45 H 0.125 0.875
46 H 0.106 0.894
47 H 0.108 0.892
48 H 0.100 0.900
49 H 0.107 0.893
Dipole moment (debyes) X Y Z Total
from point charges 1.358 29.386 11.949 31.752
hybrid contribution 0.182 -0.933 -0.180 0.968
sum 1.540 28.452 11.769 30.829
Atomic orbital electron populations
1.21814 0.92674 1.02505 1.03538 1.23347 0.95848 0.95663 0.83853
0.89049 1.23434 0.95528 1.00880 0.99364 1.22998 0.96330 0.83523
0.94126 1.23189 0.97206 0.98548 0.98094 1.23292 1.04352 0.91398
0.98908 1.23420 0.87755 0.95784 0.91910 0.88537 1.21643 1.02445
0.80000 0.96138 1.45696 1.74052 1.05700 1.10525 1.18591 0.75099
0.85615 0.85701 1.90679 1.52509 1.86793 1.16881 1.19706 1.05302
0.91563 0.95071 1.20971 1.09333 0.97614 0.92370 1.21031 0.97226
0.91867 0.99881 1.21382 1.11039 0.98900 0.93117 1.17792 0.90570
0.92373 0.93018 1.19452 1.36887 0.93136 1.02212 0.93174 1.26917
0.96749 0.93828 0.99507 1.69721 1.37191 1.00094 1.40370 0.85456
0.78392 0.79131 0.78013 1.17179 1.20280 1.17503 1.21194 1.07158
0.92339 0.98012 1.88472 1.41595 1.27569 1.71966 1.23540 0.84706
1.01493 0.93887 1.88996 1.28977 1.74387 1.39601 0.93218 0.91464
0.89216 0.87759 0.91636 0.87646 0.88295 0.89876 0.87091 0.92412
0.89644 0.74826 0.83818 0.83576 0.87501 0.89398 0.89176 0.90000
0.89302
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.86 9.66 71.98 0.70 -1.16 16
2 C 0.07 0.95 3.98 31.33 0.12 1.07 16
3 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16
4 C -0.15 -2.20 5.81 31.69 0.18 -2.01 16
5 C 0.07 0.99 1.21 -10.09 -0.01 0.97 16
6 C -0.13 -0.98 5.97 31.66 0.19 -0.79 16
7 C -0.14 -1.27 6.58 32.14 0.21 -1.06 16
8 C 0.07 1.03 3.49 31.28 0.11 1.14 16
9 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16
10 C 0.12 2.71 5.39 86.38 0.47 3.18 16
11 N -0.71 -20.01 5.46 -465.94 -2.55 -22.55 16
12 C 0.56 22.10 7.77 86.80 0.67 22.77 16
13 O -0.59 -27.32 16.33 -3.87 -0.06 -27.39 16
14 C -0.11 -4.86 5.87 -20.13 -0.12 -4.97 16
15 C -0.18 -6.57 9.55 22.70 0.22 -6.35 16
16 C -0.08 -3.08 10.01 22.18 0.22 -2.86 16
17 C -0.22 -10.33 7.17 22.77 0.16 -10.17 16
18 C 0.06 3.43 5.10 -21.32 -0.11 3.33 16
19 C -0.49 -28.49 9.57 23.47 0.22 -28.26 16
20 H 0.05 3.21 8.06 -2.91 -0.02 3.18 16
21 C 0.04 2.43 5.40 85.25 0.46 2.89 16
22 N -0.85 -47.28 13.93 21.82 0.30 -46.98 16
23 Si 0.97 42.21 24.52 68.60 1.68 43.89 16
24 H -0.25 -9.81 6.71 99.48 0.67 -9.15 16
25 H -0.28 -11.34 7.11 99.48 0.71 -10.63 16
26 H -0.25 -11.14 6.86 99.48 0.68 -10.46 16
27 C -0.17 -8.52 9.34 23.01 0.21 -8.30 16
28 O -0.38 -7.28 10.33 -148.98 -1.54 -8.82 16
29 C 0.04 0.62 7.19 72.10 0.52 1.14 16
30 O -0.40 -7.82 11.27 -148.98 -1.68 -9.50 16
31 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16
32 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16
33 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16
34 H 0.10 1.03 7.58 -2.39 -0.02 1.01 16
35 H 0.06 1.27 8.01 -2.39 -0.02 1.25 16
36 H 0.11 0.44 7.56 -2.39 -0.02 0.43 16
37 H 0.10 0.45 7.51 -2.38 -0.02 0.43 16
38 H 0.08 0.81 8.05 -2.39 -0.02 0.79 16
39 H 0.11 0.57 8.14 -2.38 -0.02 0.55 16
40 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16
41 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16
42 H 0.41 9.87 6.49 -92.70 -0.60 9.27 16
43 H 0.14 3.82 6.38 -2.91 -0.02 3.80 16
44 H 0.15 4.21 8.06 -2.91 -0.02 4.19 16
45 H 0.11 4.80 4.72 -2.91 -0.01 4.79 16
46 H 0.30 14.66 8.30 -92.71 -0.77 13.89 16
47 H 0.09 4.92 7.64 -2.91 -0.02 4.90 16
48 H 0.08 1.42 7.99 -2.39 -0.02 1.40 16
49 H 0.09 0.92 7.34 -2.39 -0.02 0.90 16
Total: -1.00 -73.58 390.39 0.89 -72.69
By element:
Atomic # 1 Polarization: 27.82 SS G_CDS: 0.30 Total: 28.12 kcal
Atomic # 6 Polarization: -33.90 SS G_CDS: 4.44 Total: -29.46 kcal
Atomic # 7 Polarization: -67.29 SS G_CDS: -2.24 Total: -69.53 kcal
Atomic # 8 Polarization: -42.42 SS G_CDS: -3.28 Total: -45.71 kcal
Atomic # 14 Polarization: 42.21 SS G_CDS: 1.68 Total: 43.89 kcal
Total: -73.58 0.89 -72.69 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000894640879.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -62.900 kcal
(2) G-P(sol) polarization free energy of solvation -73.581 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.481 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.894 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.687 kcal
(6) G-S(sol) free energy of system = (1) + (5) -135.587 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.00 seconds