Wall clock time and date at job start Wed Apr 1 2020 03:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50701 * 119.99652 * 2 1 4 4 N 1.46503 * 109.46647 * 125.38739 * 3 2 1 5 5 C 1.37618 * 127.14861 * 270.07773 * 4 3 2 6 6 C 1.47865 * 126.46317 * 0.02826 * 5 4 3 7 7 N 1.35367 * 126.44081 * 179.97438 * 6 5 4 8 8 C 1.30922 * 105.57949 * 179.84412 * 7 6 5 9 9 O 1.33689 * 107.18016 * 0.41618 * 8 7 6 10 10 N 1.21291 * 110.07230 * 359.72501 * 9 8 7 11 11 N 1.31258 * 107.06753 * 180.24496 * 5 4 3 12 12 N 1.28515 * 109.91263 * 359.76222 * 11 5 4 13 13 C 1.31531 * 110.05403 * 0.02562 * 12 11 5 14 14 N 1.38250 * 126.36453 * 179.97438 * 13 12 11 15 15 C 1.46948 * 111.00425 * 297.48882 * 14 13 12 16 16 C 1.53055 * 109.36562 * 183.19002 * 15 14 13 17 17 N 1.46958 * 109.36307 * 301.59502 * 16 15 14 18 18 C 1.46900 * 110.99672 * 183.18776 * 17 16 15 19 19 C 1.50704 * 109.46886 * 170.00426 * 18 17 16 20 20 H 1.08003 * 120.00042 * 0.02562 * 19 18 17 21 21 C 1.37874 * 119.99980 * 180.02562 * 19 18 17 22 22 N 1.31511 * 120.00299 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99889 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47233 * 90.00080 * 23 21 19 25 25 H 1.48500 * 109.46843 * 210.00376 * 23 21 19 26 26 H 1.48503 * 109.46949 * 329.99711 * 23 21 19 27 27 C 1.46955 * 110.87543 * 59.32427 * 17 16 15 28 28 C 1.46955 * 110.99845 * 61.29045 * 14 13 12 29 29 H 1.08007 * 119.99933 * 179.97438 * 1 2 3 30 30 H 1.08000 * 119.99937 * 359.97438 * 1 2 3 31 31 H 1.08000 * 119.99937 * 180.02562 * 2 1 3 32 32 H 1.08992 * 109.47525 * 5.38367 * 3 2 1 33 33 H 1.09003 * 109.47055 * 245.37691 * 3 2 1 34 34 H 1.07995 * 126.41076 * 180.16824 * 8 7 6 35 35 H 1.09004 * 109.49014 * 63.22239 * 15 14 13 36 36 H 1.09000 * 109.50929 * 303.16716 * 15 14 13 37 37 H 1.09006 * 109.48582 * 181.63394 * 16 15 14 38 38 H 1.08998 * 109.48729 * 61.57054 * 16 15 14 39 39 H 1.08994 * 109.47255 * 290.00213 * 18 17 16 40 40 H 1.08994 * 109.47283 * 50.00765 * 18 17 16 41 41 H 0.97000 * 120.00225 * 180.02562 * 22 21 19 42 42 H 1.09004 * 109.49307 * 60.64361 * 27 17 16 43 43 H 1.09005 * 109.48627 * 180.70707 * 27 17 16 44 44 H 1.08998 * 109.49384 * 296.77551 * 28 14 13 45 45 H 1.08998 * 109.49133 * 56.82185 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 3.0003 1.3281 1.1261 5 6 2.7568 1.7868 2.4005 6 6 1.4876 2.3562 2.9020 7 7 1.2484 2.8068 4.1559 8 6 0.0064 3.2207 4.1498 9 8 -0.4747 3.0082 2.9207 10 7 0.3817 2.5141 2.2182 11 7 3.8651 1.6279 3.0855 12 7 4.7701 1.1040 2.3384 13 6 4.2934 0.8974 1.1300 14 7 4.9783 0.3499 0.0612 15 6 6.1215 1.1914 -0.3186 16 6 6.8039 0.5941 -1.5516 17 7 7.2397 -0.7768 -1.2512 18 6 7.9673 -1.3586 -2.3870 19 6 8.6065 -2.6558 -1.9626 20 1 8.4840 -3.0125 -0.9506 21 6 9.3476 -3.3871 -2.8664 22 7 9.4964 -2.9531 -4.0989 23 14 10.1393 -4.9953 -2.3406 24 1 9.1955 -6.1152 -2.5860 25 1 11.3819 -5.2145 -3.1237 26 1 10.4701 -4.9345 -0.8942 27 6 6.0964 -1.6183 -0.8714 28 6 5.4140 -1.0211 0.3616 29 1 -0.5400 -0.9354 -0.0004 30 1 -0.5400 0.9353 0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3591 2.1313 0.0964 33 1 2.6159 1.4058 -0.9342 34 1 -0.5305 3.6494 4.9830 35 1 6.8327 1.2326 0.5064 36 1 5.7721 2.1980 -0.5482 37 1 7.6695 1.2008 -1.8178 38 1 6.1008 0.5781 -2.3843 39 1 7.2728 -1.5466 -3.2056 40 1 8.7396 -0.6643 -2.7178 41 1 10.0175 -3.4678 -4.7348 42 1 5.3852 -1.6596 -1.6964 43 1 6.4461 -2.6249 -0.6418 44 1 6.1171 -1.0051 1.1943 45 1 4.5485 -1.6276 0.6281 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000908736305.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:40:41 Heat of formation + Delta-G solvation = 210.635747 kcal Electronic energy + Delta-G solvation = -30152.255360 eV Core-core repulsion = 26018.606318 eV Total energy + Delta-G solvation = -4133.649042 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -46.14844 -43.20636 -38.95344 -36.61124 -36.40528 -35.28239 -33.35175 -32.88225 -32.46503 -30.68023 -30.22809 -27.98000 -27.09545 -25.46014 -25.20281 -24.24313 -23.27848 -22.23579 -21.76345 -21.30396 -20.33645 -19.36363 -18.70850 -18.66398 -17.59209 -16.75596 -16.58256 -16.28292 -16.04822 -15.54393 -15.17097 -14.77312 -14.58093 -14.35346 -14.09724 -13.94767 -13.62720 -13.26497 -13.15178 -12.76442 -12.53712 -12.20999 -11.95310 -11.92302 -11.87962 -11.66811 -11.37072 -11.18424 -10.98496 -10.92077 -10.83410 -10.82360 -10.58009 -10.45476 -10.41519 -9.95828 -9.83620 -9.24075 -9.14315 -8.83035 -8.46264 -7.33464 -6.05619 -4.07238 0.33799 1.06476 1.41837 1.94058 2.05751 2.43398 2.71595 2.87717 3.30584 3.37287 3.41398 3.41960 3.61360 4.26949 4.36489 4.39623 4.41668 4.75934 4.78773 4.84709 4.92499 5.10560 5.11871 5.29717 5.32576 5.35066 5.37357 5.45460 5.48869 5.59204 5.67409 5.78914 5.84412 5.98696 6.11799 6.16219 6.26796 6.29076 6.47318 6.53680 6.74608 7.09190 7.22841 7.28079 7.51356 7.75244 8.01484 8.12167 8.37031 8.48021 9.00140 9.57393 11.05148 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.023433 B = 0.002286 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.610254 B =12246.581433 C =12570.131508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.179 4.179 3 C 0.138 3.862 4 N -0.443 5.443 5 C 0.226 3.774 6 C 0.263 3.737 7 N -0.449 5.449 8 C 0.171 3.829 9 O 0.088 5.912 10 N -0.366 5.366 11 N -0.221 5.221 12 N -0.299 5.299 13 C 0.384 3.616 14 N -0.469 5.469 15 C 0.071 3.929 16 C 0.059 3.941 17 N -0.537 5.537 18 C 0.194 3.806 19 C -0.509 4.509 20 H 0.064 0.936 21 C 0.056 3.944 22 N -0.898 5.898 23 Si 0.897 3.103 24 H -0.281 1.281 25 H -0.287 1.287 26 H -0.272 1.272 27 C 0.070 3.930 28 C 0.070 3.930 29 H 0.105 0.895 30 H 0.103 0.897 31 H 0.118 0.882 32 H 0.102 0.898 33 H 0.115 0.885 34 H 0.271 0.729 35 H 0.064 0.936 36 H 0.072 0.928 37 H 0.081 0.919 38 H 0.033 0.967 39 H -0.007 1.007 40 H 0.032 0.968 41 H 0.261 0.739 42 H 0.032 0.968 43 H 0.096 0.904 44 H 0.064 0.936 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.851 12.972 11.340 29.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.197 4.197 3 C 0.016 3.984 4 N -0.136 5.136 5 C -0.039 4.039 6 C -0.009 4.009 7 N -0.181 5.181 8 C -0.071 4.071 9 O 0.025 5.975 10 N -0.073 5.073 11 N -0.067 5.067 12 N -0.146 5.146 13 C 0.028 3.972 14 N -0.196 5.196 15 C -0.056 4.056 16 C -0.071 4.071 17 N -0.262 5.262 18 C 0.070 3.930 19 C -0.547 4.547 20 H 0.082 0.918 21 C -0.146 4.146 22 N -0.538 5.538 23 Si 0.725 3.275 24 H -0.208 1.208 25 H -0.213 1.213 26 H -0.197 1.197 27 C -0.059 4.059 28 C -0.057 4.057 29 H 0.123 0.877 30 H 0.122 0.878 31 H 0.136 0.864 32 H 0.121 0.879 33 H 0.133 0.867 34 H 0.287 0.713 35 H 0.083 0.917 36 H 0.090 0.910 37 H 0.100 0.900 38 H 0.051 0.949 39 H 0.011 0.989 40 H 0.050 0.950 41 H 0.071 0.929 42 H 0.050 0.950 43 H 0.114 0.886 44 H 0.082 0.918 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -22.451 12.639 11.591 28.251 hybrid contribution -0.713 -0.811 -0.832 1.363 sum -23.164 11.829 10.758 28.147 Atomic orbital electron populations 1.23982 0.95467 1.02596 0.97146 1.23009 0.96255 0.97790 1.02693 1.21135 0.91315 0.97928 0.87989 1.46348 1.11536 1.45389 1.10303 1.20065 0.93709 1.07256 0.82832 1.21721 0.91298 1.00861 0.86995 1.72093 1.13760 1.14471 1.17796 1.30628 0.89745 0.96707 0.89981 1.85311 1.35325 1.56343 1.20495 1.75024 0.98848 1.15701 1.17720 1.74510 0.95641 1.12370 1.24196 1.74964 1.22436 1.17088 1.00100 1.22519 0.83429 0.98717 0.92529 1.58991 1.26978 1.04495 1.29164 1.22323 0.89360 0.94683 0.99236 1.22091 0.98141 0.92663 0.94169 1.62308 1.22299 1.00263 1.41358 1.19713 0.92453 0.94974 0.85896 1.21145 1.31246 1.04926 0.97412 0.91814 1.24984 0.96482 0.98222 0.94876 1.69952 1.40937 1.38965 1.03904 0.86505 0.78779 0.83455 0.78748 1.20753 1.21258 1.19710 1.22028 0.91455 0.98174 0.94266 1.22405 0.98999 0.84462 0.99830 0.87662 0.87829 0.86369 0.87938 0.86691 0.71345 0.91733 0.90989 0.90027 0.94867 0.98943 0.94998 0.92898 0.95009 0.88610 0.91762 0.91012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 14.32 29.02 0.42 -0.82 16 2 C -0.18 -1.74 9.85 -36.02 -0.35 -2.09 16 3 C 0.14 1.41 6.24 -5.19 -0.03 1.38 16 4 N -0.44 -5.87 2.81 -116.00 -0.33 -6.20 16 5 C 0.23 3.24 8.00 -153.72 -1.23 2.01 16 6 C 0.26 3.07 8.03 -156.05 -1.25 1.82 16 7 N -0.45 -4.51 11.58 -13.74 -0.16 -4.67 16 8 C 0.17 0.77 13.38 52.06 0.70 1.46 16 9 O 0.09 0.55 11.29 17.99 0.20 0.75 16 10 N -0.37 -3.43 10.47 30.97 0.32 -3.10 16 11 N -0.22 -3.73 12.23 32.61 0.40 -3.33 16 12 N -0.30 -5.18 12.18 30.27 0.37 -4.81 16 13 C 0.38 5.84 6.42 -319.18 -2.05 3.79 16 14 N -0.47 -7.06 4.71 -174.43 -0.82 -7.88 16 15 C 0.07 1.08 5.53 -3.77 -0.02 1.06 16 16 C 0.06 1.01 5.61 -3.76 -0.02 0.99 16 17 N -0.54 -11.16 4.70 -235.90 -1.11 -12.27 16 18 C 0.19 4.90 4.72 -4.97 -0.02 4.88 16 19 C -0.51 -13.94 8.47 -34.44 -0.29 -14.23 16 20 H 0.06 1.73 7.13 -52.48 -0.37 1.36 16 21 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 22 N -0.90 -26.28 13.29 55.43 0.74 -25.54 16 23 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 26 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 27 C 0.07 1.29 5.43 -3.77 -0.02 1.27 16 28 C 0.07 1.11 5.52 -3.77 -0.02 1.09 16 29 H 0.11 0.73 8.06 -52.48 -0.42 0.31 16 30 H 0.10 0.75 7.84 -52.49 -0.41 0.34 16 31 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 32 H 0.10 0.95 6.35 -51.93 -0.33 0.62 16 33 H 0.12 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.27 -0.52 8.06 -52.49 -0.42 -0.95 16 35 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.07 0.97 8.13 -51.93 -0.42 0.54 16 37 H 0.08 1.37 8.07 -51.93 -0.42 0.95 16 38 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 39 H -0.01 -0.19 8.12 -51.93 -0.42 -0.62 16 40 H 0.03 0.86 8.03 -51.93 -0.42 0.44 16 41 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 42 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.10 1.90 6.79 -51.93 -0.35 1.55 16 44 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 45 H 0.07 1.04 8.13 -51.93 -0.42 0.62 16 LS Contribution 382.89 15.07 5.77 5.77 Total: -1.00 -34.15 382.89 -10.03 -44.18 By element: Atomic # 1 Polarization: 2.73 SS G_CDS: -6.09 Total: -3.36 kcal Atomic # 6 Polarization: 8.38 SS G_CDS: -4.30 Total: 4.08 kcal Atomic # 7 Polarization: -67.22 SS G_CDS: -0.59 Total: -67.81 kcal Atomic # 8 Polarization: 0.55 SS G_CDS: 0.20 Total: 0.75 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.15 -10.03 -44.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000908736305.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 254.818 kcal (2) G-P(sol) polarization free energy of solvation -34.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 220.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 210.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds