Wall clock time and date at job start Wed Apr 1 2020 03:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50701 * 119.99652 * 2 1 4 4 N 1.46503 * 109.46647 * 125.38739 * 3 2 1 5 5 C 1.37618 * 127.14861 * 270.07773 * 4 3 2 6 6 C 1.47865 * 126.46317 * 0.02826 * 5 4 3 7 7 N 1.35367 * 126.44081 * 179.97438 * 6 5 4 8 8 C 1.30922 * 105.57949 * 179.84412 * 7 6 5 9 9 O 1.33689 * 107.18016 * 0.41618 * 8 7 6 10 10 N 1.21291 * 110.07230 * 359.72501 * 9 8 7 11 11 N 1.31258 * 107.06753 * 180.24496 * 5 4 3 12 12 N 1.28515 * 109.91263 * 359.76222 * 11 5 4 13 13 C 1.31531 * 110.05403 * 0.02562 * 12 11 5 14 14 N 1.38250 * 126.36453 * 179.97438 * 13 12 11 15 15 C 1.46948 * 111.00425 * 297.48882 * 14 13 12 16 16 C 1.53055 * 109.36562 * 183.19002 * 15 14 13 17 17 N 1.46958 * 109.36307 * 301.59502 * 16 15 14 18 18 C 1.46900 * 110.99672 * 183.18776 * 17 16 15 19 19 C 1.50704 * 109.46886 * 170.00426 * 18 17 16 20 20 H 1.08003 * 120.00042 * 0.02562 * 19 18 17 21 21 C 1.37874 * 119.99980 * 180.02562 * 19 18 17 22 22 N 1.31511 * 120.00299 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99889 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47233 * 90.00080 * 23 21 19 25 25 H 1.48500 * 109.46843 * 210.00376 * 23 21 19 26 26 H 1.48503 * 109.46949 * 329.99711 * 23 21 19 27 27 C 1.46955 * 110.87543 * 59.32427 * 17 16 15 28 28 C 1.46955 * 110.99845 * 61.29045 * 14 13 12 29 29 H 1.08007 * 119.99933 * 179.97438 * 1 2 3 30 30 H 1.08000 * 119.99937 * 359.97438 * 1 2 3 31 31 H 1.08000 * 119.99937 * 180.02562 * 2 1 3 32 32 H 1.08992 * 109.47525 * 5.38367 * 3 2 1 33 33 H 1.09003 * 109.47055 * 245.37691 * 3 2 1 34 34 H 1.07995 * 126.41076 * 180.16824 * 8 7 6 35 35 H 1.09004 * 109.49014 * 63.22239 * 15 14 13 36 36 H 1.09000 * 109.50929 * 303.16716 * 15 14 13 37 37 H 1.09006 * 109.48582 * 181.63394 * 16 15 14 38 38 H 1.08998 * 109.48729 * 61.57054 * 16 15 14 39 39 H 1.08994 * 109.47255 * 290.00213 * 18 17 16 40 40 H 1.08994 * 109.47283 * 50.00765 * 18 17 16 41 41 H 0.97000 * 120.00225 * 180.02562 * 22 21 19 42 42 H 1.09004 * 109.49307 * 60.64361 * 27 17 16 43 43 H 1.09005 * 109.48627 * 180.70707 * 27 17 16 44 44 H 1.08998 * 109.49384 * 296.77551 * 28 14 13 45 45 H 1.08998 * 109.49133 * 56.82185 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 3.0003 1.3281 1.1261 5 6 2.7568 1.7868 2.4005 6 6 1.4876 2.3562 2.9020 7 7 1.2484 2.8068 4.1559 8 6 0.0064 3.2207 4.1498 9 8 -0.4747 3.0082 2.9207 10 7 0.3817 2.5141 2.2182 11 7 3.8651 1.6279 3.0855 12 7 4.7701 1.1040 2.3384 13 6 4.2934 0.8974 1.1300 14 7 4.9783 0.3499 0.0612 15 6 6.1215 1.1914 -0.3186 16 6 6.8039 0.5941 -1.5516 17 7 7.2397 -0.7768 -1.2512 18 6 7.9673 -1.3586 -2.3870 19 6 8.6065 -2.6558 -1.9626 20 1 8.4840 -3.0125 -0.9506 21 6 9.3476 -3.3871 -2.8664 22 7 9.4964 -2.9531 -4.0989 23 14 10.1393 -4.9953 -2.3406 24 1 9.1955 -6.1152 -2.5860 25 1 11.3819 -5.2145 -3.1237 26 1 10.4701 -4.9345 -0.8942 27 6 6.0964 -1.6183 -0.8714 28 6 5.4140 -1.0211 0.3616 29 1 -0.5400 -0.9354 -0.0004 30 1 -0.5400 0.9353 0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3591 2.1313 0.0964 33 1 2.6159 1.4058 -0.9342 34 1 -0.5305 3.6494 4.9830 35 1 6.8327 1.2326 0.5064 36 1 5.7721 2.1980 -0.5482 37 1 7.6695 1.2008 -1.8178 38 1 6.1008 0.5781 -2.3843 39 1 7.2728 -1.5466 -3.2056 40 1 8.7396 -0.6643 -2.7178 41 1 10.0175 -3.4678 -4.7348 42 1 5.3852 -1.6596 -1.6964 43 1 6.4461 -2.6249 -0.6418 44 1 6.1171 -1.0051 1.1943 45 1 4.5485 -1.6276 0.6281 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000908736305.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:40:40 Heat of formation + Delta-G solvation = 186.573582 kcal Electronic energy + Delta-G solvation = -30153.298774 eV Core-core repulsion = 26018.606318 eV Total energy + Delta-G solvation = -4134.692456 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -46.78643 -44.31724 -40.36494 -37.48563 -37.22736 -36.71902 -34.61868 -34.12379 -33.54520 -32.09748 -31.46237 -29.58637 -28.09928 -26.89369 -26.24651 -24.92397 -24.70691 -23.78440 -22.86792 -22.51175 -21.18548 -20.68927 -19.51055 -19.30821 -18.56253 -18.46530 -17.80366 -17.58328 -16.91596 -16.68716 -16.20659 -16.00601 -15.95849 -15.74602 -15.55499 -15.31437 -14.81903 -14.74185 -14.02297 -13.83949 -13.58754 -13.51950 -13.30382 -13.18845 -12.98959 -12.78382 -12.68105 -12.62172 -12.36947 -12.34028 -12.29046 -12.19886 -11.98045 -11.78454 -11.68619 -11.38155 -11.24375 -10.66289 -10.61277 -10.21944 -10.10714 -9.06813 -8.20081 -6.29503 -0.44490 0.40592 0.52971 1.00291 1.26757 1.41720 1.43066 1.54568 1.68715 1.92052 2.12987 2.40583 2.48938 2.81732 3.11723 3.19486 3.46274 3.53657 3.65805 3.69035 3.95537 3.99120 4.03278 4.12131 4.16754 4.25569 4.38173 4.38655 4.46084 4.60223 4.64616 4.65438 4.79425 4.85217 4.86790 4.94090 4.95693 5.15275 5.19056 5.23821 5.46669 5.48347 5.54418 5.64797 5.90594 6.04230 6.27753 6.57714 6.85818 6.94941 7.23979 7.40073 8.90820 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.023433 B = 0.002286 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.610254 B =12246.581433 C =12570.131508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.201 4.201 3 C 0.138 3.862 4 N -0.437 5.437 5 C 0.241 3.759 6 C 0.229 3.771 7 N -0.495 5.495 8 C 0.207 3.793 9 O 0.107 5.893 10 N -0.363 5.363 11 N -0.261 5.261 12 N -0.329 5.329 13 C 0.376 3.624 14 N -0.459 5.459 15 C 0.081 3.919 16 C 0.061 3.939 17 N -0.548 5.548 18 C 0.211 3.789 19 C -0.523 4.523 20 H 0.062 0.938 21 C 0.004 3.996 22 N -0.933 5.933 23 Si 0.966 3.034 24 H -0.272 1.272 25 H -0.283 1.283 26 H -0.267 1.267 27 C 0.076 3.924 28 C 0.083 3.917 29 H 0.118 0.882 30 H 0.115 0.885 31 H 0.105 0.895 32 H 0.115 0.885 33 H 0.118 0.882 34 H 0.332 0.668 35 H 0.050 0.950 36 H 0.096 0.904 37 H 0.084 0.916 38 H 0.037 0.963 39 H -0.032 1.032 40 H 0.008 0.992 41 H 0.264 0.736 42 H 0.031 0.969 43 H 0.080 0.920 44 H 0.049 0.951 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.842 13.625 12.560 32.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.220 4.220 3 C 0.018 3.982 4 N -0.128 5.128 5 C -0.026 4.026 6 C -0.042 4.042 7 N -0.227 5.227 8 C -0.031 4.031 9 O 0.039 5.961 10 N -0.067 5.067 11 N -0.106 5.106 12 N -0.175 5.175 13 C 0.019 3.981 14 N -0.186 5.186 15 C -0.046 4.046 16 C -0.067 4.067 17 N -0.273 5.273 18 C 0.085 3.915 19 C -0.561 4.561 20 H 0.080 0.920 21 C -0.195 4.195 22 N -0.573 5.573 23 Si 0.791 3.209 24 H -0.197 1.197 25 H -0.208 1.208 26 H -0.192 1.192 27 C -0.052 4.052 28 C -0.044 4.044 29 H 0.136 0.864 30 H 0.133 0.867 31 H 0.123 0.877 32 H 0.133 0.867 33 H 0.136 0.864 34 H 0.346 0.654 35 H 0.069 0.931 36 H 0.114 0.886 37 H 0.102 0.898 38 H 0.055 0.945 39 H -0.014 1.014 40 H 0.026 0.974 41 H 0.073 0.927 42 H 0.050 0.950 43 H 0.098 0.902 44 H 0.067 0.933 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -25.439 13.295 12.817 31.435 hybrid contribution -0.040 -0.881 -1.144 1.445 sum -25.479 12.414 11.673 30.652 Atomic orbital electron populations 1.24176 0.94780 1.03759 0.94241 1.22897 0.96862 0.96911 1.05341 1.21333 0.91091 0.98797 0.87001 1.46488 1.11104 1.44487 1.10759 1.20506 0.94099 1.05333 0.82677 1.21599 0.91138 1.03291 0.88194 1.72054 1.16595 1.16437 1.17566 1.31847 0.88083 0.93348 0.89851 1.85292 1.34209 1.55390 1.21185 1.75015 0.98360 1.15081 1.18274 1.74417 0.96724 1.14359 1.25106 1.74847 1.23611 1.18012 1.01062 1.22335 0.84214 0.99562 0.91999 1.58959 1.26623 1.03890 1.29142 1.22208 0.89166 0.95657 0.97569 1.22121 0.98552 0.90696 0.95363 1.62198 1.23707 1.01992 1.39403 1.19339 0.91631 0.94051 0.86488 1.21447 1.31414 1.05853 0.97393 0.91960 1.25858 0.96991 1.01779 0.94833 1.70070 1.41738 1.40495 1.05000 0.85429 0.77863 0.79180 0.78435 1.19742 1.20847 1.19170 1.21932 0.90693 0.97369 0.95256 1.22185 0.99048 0.85437 0.97683 0.86376 0.86660 0.87705 0.86696 0.86442 0.65385 0.93119 0.88572 0.89754 0.94476 1.01441 0.97389 0.92695 0.95038 0.90182 0.93252 0.89264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.79 14.32 67.78 0.97 -0.82 16 2 C -0.20 -3.66 9.85 25.65 0.25 -3.40 16 3 C 0.14 2.67 6.24 85.63 0.53 3.20 16 4 N -0.44 -11.39 2.81 -520.92 -1.46 -12.85 16 5 C 0.24 6.83 8.00 136.20 1.09 7.92 16 6 C 0.23 5.03 8.03 137.02 1.10 6.13 16 7 N -0.49 -8.92 11.58 -314.53 -3.64 -12.56 16 8 C 0.21 1.02 13.38 130.49 1.75 2.77 16 9 O 0.11 0.93 11.29 74.43 0.84 1.77 16 10 N -0.36 -5.88 10.47 -58.91 -0.62 -6.49 16 11 N -0.26 -8.98 12.23 -50.76 -0.62 -9.61 16 12 N -0.33 -11.68 12.18 -58.14 -0.71 -12.39 16 13 C 0.38 11.49 6.42 260.22 1.67 13.16 16 14 N -0.46 -13.84 4.71 -705.77 -3.33 -17.16 16 15 C 0.08 2.47 5.53 86.31 0.48 2.94 16 16 C 0.06 2.14 5.61 86.31 0.48 2.63 16 17 N -0.55 -23.47 4.70 -900.26 -4.23 -27.70 16 18 C 0.21 11.06 4.72 85.56 0.40 11.46 16 19 C -0.52 -29.33 8.47 25.60 0.22 -29.12 16 20 H 0.06 3.44 7.13 -2.91 -0.02 3.42 16 21 C 0.00 0.20 5.46 84.65 0.46 0.66 16 22 N -0.93 -55.64 13.29 21.45 0.28 -55.36 16 23 Si 0.97 44.26 29.54 68.60 2.03 46.29 16 24 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 25 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 26 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 27 C 0.08 2.90 5.43 86.31 0.47 3.37 16 28 C 0.08 2.71 5.52 86.31 0.48 3.19 16 29 H 0.12 1.31 8.06 -2.91 -0.02 1.29 16 30 H 0.12 1.31 7.84 -2.91 -0.02 1.28 16 31 H 0.10 2.19 8.06 -2.91 -0.02 2.17 16 32 H 0.12 1.91 6.35 -2.39 -0.02 1.90 16 33 H 0.12 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.33 -3.29 8.06 -2.91 -0.02 -3.31 16 35 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.10 2.49 8.13 -2.39 -0.02 2.47 16 37 H 0.08 2.88 8.07 -2.38 -0.02 2.87 16 38 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 39 H -0.03 -1.81 8.12 -2.39 -0.02 -1.83 16 40 H 0.01 0.45 8.03 -2.39 -0.02 0.43 16 41 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 42 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.08 3.28 6.79 -2.38 -0.02 3.27 16 44 H 0.05 1.76 8.14 -2.39 -0.02 1.75 16 45 H 0.09 2.59 8.13 -2.39 -0.02 2.57 16 Total: -1.00 -77.75 382.89 -0.09 -77.84 By element: Atomic # 1 Polarization: 3.12 SS G_CDS: 1.01 Total: 4.13 kcal Atomic # 6 Polarization: 13.74 SS G_CDS: 10.36 Total: 24.09 kcal Atomic # 7 Polarization: -139.80 SS G_CDS: -14.32 Total: -154.12 kcal Atomic # 8 Polarization: 0.93 SS G_CDS: 0.84 Total: 1.77 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -77.75 -0.09 -77.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000908736305.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 264.414 kcal (2) G-P(sol) polarization free energy of solvation -77.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 186.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 186.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds