Wall clock time and date at job start Wed Apr 1 2020 02:57:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 O 1.42903 * 109.52326 * 198.13036 * 3 2 1 5 5 C 1.53125 * 109.52550 * 318.25795 * 3 2 1 6 6 C 1.53034 * 109.28129 * 62.30959 * 5 3 2 7 7 N 1.46847 * 109.52159 * 59.18225 * 6 5 3 8 8 C 1.46897 * 111.00126 * 174.16063 * 7 6 5 9 9 C 1.52999 * 109.47009 * 294.18990 * 8 7 6 10 10 H 1.09004 * 109.47124 * 57.48957 * 9 8 7 11 11 O 1.42896 * 109.47427 * 297.48620 * 9 8 7 12 12 C 1.53006 * 109.47049 * 177.48314 * 9 8 7 13 13 O 1.42902 * 109.47003 * 185.00257 * 12 9 8 14 14 C 1.35671 * 116.99724 * 180.02562 * 13 12 9 15 15 C 1.39312 * 119.81972 * 180.02562 * 14 13 12 16 16 C 1.36439 * 120.19049 * 179.72153 * 15 14 13 17 17 C 1.40838 * 119.80730 * 0.27917 * 16 15 14 18 18 C 1.41215 * 120.17619 * 180.02562 * 17 16 15 19 19 H 1.08000 * 120.00286 * 208.76866 * 18 17 16 20 20 C 1.39883 * 120.00048 * 28.77155 * 18 17 16 21 21 N 1.30883 * 120.00181 * 9.32014 * 20 18 17 22 22 Si 1.86804 * 120.00040 * 189.31336 * 20 18 17 23 23 H 1.48500 * 109.47098 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46965 * 120.00061 * 22 20 18 25 25 H 1.48492 * 109.47482 * 240.00092 * 22 20 18 26 26 C 1.40825 * 119.64227 * 359.97438 * 17 16 15 27 27 C 1.36440 * 119.81319 * 0.02562 * 26 17 16 28 28 C 1.46845 * 111.20153 * 298.26060 * 7 6 5 29 29 C 1.53040 * 109.52323 * 61.73849 * 28 7 6 30 30 H 4.38551 * 5.44098 * 179.97438 * 4 1 2 31 31 H 0.96695 * 113.99496 * 300.12204 * 4 3 2 32 32 H 1.09001 * 109.49850 * 302.37175 * 5 3 2 33 33 H 1.08999 * 109.53827 * 182.27572 * 5 3 2 34 34 H 1.09003 * 109.46385 * 299.17239 * 6 5 3 35 35 H 1.08992 * 109.45505 * 179.19363 * 6 5 3 36 36 H 1.09001 * 109.47209 * 174.19548 * 8 7 6 37 37 H 1.09004 * 109.47168 * 54.19455 * 8 7 6 38 38 H 0.96704 * 113.99742 * 299.99951 * 11 9 8 39 39 H 1.08996 * 109.47009 * 65.00201 * 12 9 8 40 40 H 1.09000 * 109.47064 * 305.00366 * 12 9 8 41 41 H 1.08002 * 119.90108 * 359.97438 * 15 14 13 42 42 H 1.07996 * 120.09497 * 180.29264 * 16 15 14 43 43 H 0.96998 * 120.00242 * 180.02562 * 21 20 18 44 44 H 1.07998 * 120.09615 * 180.02562 * 26 17 16 45 45 H 1.08006 * 119.90805 * 180.02562 * 27 26 17 46 46 H 1.08998 * 109.46784 * 181.75827 * 28 7 6 47 47 H 1.09007 * 109.46088 * 301.72367 * 28 7 6 48 48 H 1.09003 * 109.50307 * 180.88685 * 29 28 7 49 49 H 1.08994 * 109.50683 * 60.76319 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 8 3.1229 1.2809 0.4191 5 6 3.1582 -1.0760 0.9608 6 6 2.6950 -2.4505 0.4729 7 7 3.2122 -2.6907 -0.8803 8 6 2.9040 -4.0557 -1.3271 9 6 3.6633 -5.0604 -0.4581 10 1 3.3947 -4.9120 0.5878 11 8 5.0693 -4.8644 -0.6213 12 6 3.2939 -6.4832 -0.8825 13 8 3.9115 -7.4197 0.0028 14 6 3.6839 -8.7357 -0.2364 15 6 4.2567 -9.6993 0.5907 16 6 4.0282 -11.0246 0.3606 17 6 3.2154 -11.4175 -0.7204 18 6 2.9733 -12.7870 -0.9654 19 1 2.7775 -13.1293 -1.9709 20 6 2.9871 -13.7002 0.0941 21 7 3.0416 -13.2694 1.3287 22 14 2.9276 -15.5347 -0.2532 23 1 2.8707 -15.7592 -1.7201 24 1 4.1440 -16.1829 0.2995 25 1 1.7214 -16.1204 0.3847 26 6 2.6445 -10.4372 -1.5549 27 6 2.8829 -9.1161 -1.3109 28 6 2.6960 -1.6970 -1.8302 29 6 3.1591 -0.2999 -1.4110 30 1 -1.0503 -0.0003 -0.0003 31 1 2.8362 2.0115 -0.1456 32 1 2.7612 -0.8914 1.9591 33 1 4.2474 -1.0487 0.9916 34 1 1.6056 -2.4819 0.4562 35 1 3.0702 -3.2204 1.1471 36 1 3.2060 -4.1744 -2.3677 37 1 1.8324 -4.2343 -1.2371 38 1 5.3798 -4.9809 -1.5297 39 1 3.6422 -6.6609 -1.8999 40 1 2.2115 -6.6049 -0.8426 41 1 4.8801 -9.3962 1.4190 42 1 4.4692 -11.7701 1.0055 43 1 3.0516 -13.9026 2.0634 44 1 2.0197 -10.7303 -2.3856 45 1 2.4455 -8.3630 -1.9496 46 1 3.0717 -1.9197 -2.8289 47 1 1.6065 -1.7319 -1.8362 48 1 2.7628 0.4391 -2.1074 49 1 4.2483 -0.2601 -1.4182 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931142200.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:48 Heat of formation + Delta-G solvation = -56.677308 kcal Electronic energy + Delta-G solvation = -29248.002631 eV Core-core repulsion = 25141.716866 eV Total energy + Delta-G solvation = -4106.285765 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.27065 -39.02674 -37.82009 -36.57091 -35.81845 -33.52484 -33.27539 -31.98437 -31.40922 -30.27067 -29.43314 -28.89176 -26.14914 -24.71704 -23.99218 -23.43743 -21.83556 -21.13406 -20.64885 -20.55937 -18.65260 -17.41140 -17.31168 -17.04857 -16.51360 -16.24878 -15.96787 -15.39531 -15.24386 -15.17631 -14.86114 -14.51004 -14.16712 -14.02313 -13.89907 -13.49472 -13.35128 -12.85638 -12.65880 -12.25024 -12.17348 -12.11783 -11.99430 -11.75824 -11.67546 -11.63589 -11.42122 -11.31776 -11.16349 -10.99187 -10.96107 -10.90840 -10.72763 -10.63601 -10.24416 -9.97153 -9.88783 -9.80154 -9.31078 -9.09432 -8.59452 -7.64927 -6.96991 -6.65733 -4.28054 2.27624 2.35132 2.77275 2.94125 3.09743 3.14739 3.19487 3.30167 3.76636 3.78867 3.96986 4.02355 4.32669 4.39073 4.46180 4.66160 4.72098 4.85293 4.92937 4.98987 5.06865 5.08272 5.19004 5.25813 5.33599 5.38333 5.38958 5.44841 5.52576 5.60093 5.64643 5.66509 5.74519 5.89129 6.01042 6.04420 6.21528 6.66746 6.73344 6.73514 6.97081 7.11336 7.11535 7.12493 7.20258 7.47039 7.56324 7.76227 7.77699 8.01642 8.21981 8.45023 8.66012 8.92030 8.98512 10.28520 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.030535 B = 0.001654 C = 0.001646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.751411 B =16929.646625 C =17009.291493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.214 4.214 3 C 0.243 3.757 4 O -0.547 6.547 5 C -0.097 4.097 6 C 0.053 3.947 7 N -0.524 5.524 8 C 0.027 3.973 9 C 0.116 3.884 10 H 0.104 0.896 11 O -0.538 6.538 12 C 0.038 3.962 13 O -0.316 6.316 14 C -0.002 4.002 15 C -0.123 4.123 16 C -0.125 4.125 17 C 0.084 3.916 18 C -0.463 4.463 19 H 0.075 0.925 20 C 0.071 3.929 21 N -0.809 5.809 22 Si 0.911 3.089 23 H -0.262 1.262 24 H -0.273 1.273 25 H -0.276 1.276 26 C -0.193 4.193 27 C -0.173 4.173 28 C 0.057 3.943 29 C -0.134 4.134 30 H 0.218 0.782 31 H 0.379 0.621 32 H 0.077 0.923 33 H 0.092 0.908 34 H 0.037 0.963 35 H 0.090 0.910 36 H 0.083 0.917 37 H 0.046 0.954 38 H 0.370 0.630 39 H 0.053 0.947 40 H 0.056 0.944 41 H 0.098 0.902 42 H 0.130 0.870 43 H 0.278 0.722 44 H 0.094 0.906 45 H 0.092 0.908 46 H 0.081 0.919 47 H 0.036 0.964 48 H 0.072 0.928 49 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.703 24.392 -4.803 25.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.214 4.214 3 C 0.202 3.798 4 O -0.352 6.352 5 C -0.135 4.135 6 C -0.075 4.075 7 N -0.249 5.249 8 C -0.101 4.101 9 C 0.056 3.944 10 H 0.122 0.878 11 O -0.342 6.342 12 C -0.040 4.040 13 O -0.232 6.232 14 C -0.045 4.045 15 C -0.142 4.142 16 C -0.144 4.144 17 C 0.082 3.918 18 C -0.494 4.494 19 H 0.093 0.907 20 C -0.145 4.145 21 N -0.437 5.437 22 Si 0.736 3.264 23 H -0.186 1.186 24 H -0.199 1.199 25 H -0.201 1.201 26 C -0.212 4.212 27 C -0.192 4.192 28 C -0.071 4.071 29 C -0.172 4.172 30 H 0.235 0.765 31 H 0.227 0.773 32 H 0.096 0.904 33 H 0.110 0.890 34 H 0.055 0.945 35 H 0.108 0.892 36 H 0.101 0.899 37 H 0.064 0.936 38 H 0.217 0.783 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.116 0.884 42 H 0.148 0.852 43 H 0.089 0.911 44 H 0.113 0.887 45 H 0.110 0.890 46 H 0.099 0.901 47 H 0.054 0.946 48 H 0.090 0.910 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.834 24.175 -3.286 24.466 hybrid contribution -1.922 -0.728 -1.417 2.496 sum -3.756 23.447 -4.703 24.208 Atomic orbital electron populations 1.25085 0.96003 0.98594 1.00307 1.23917 0.95129 1.01677 1.00681 1.18182 0.81632 0.84978 0.95019 1.86638 1.75777 1.15855 1.56961 1.21509 1.02965 0.91203 0.97789 1.22162 0.97400 0.97135 0.90766 1.61824 1.59485 1.01660 1.01903 1.22715 0.98738 0.88675 1.00016 1.21870 0.82131 0.89897 1.00530 0.87780 1.86641 1.21157 1.93251 1.33120 1.23122 0.97574 0.89288 0.93986 1.85894 1.70559 1.13953 1.52796 1.18666 1.05115 0.81337 0.99383 1.19889 1.02708 0.92180 0.99449 1.21102 0.99474 0.93327 1.00509 1.17630 0.89722 0.93090 0.91367 1.19479 1.43271 0.91769 0.94836 0.90666 1.25861 0.92653 1.01344 0.94592 1.69793 1.37887 1.36568 0.99429 0.86220 0.78437 0.82064 0.79690 1.18619 1.19855 1.20111 1.20615 1.04985 0.91957 1.03683 1.20399 1.03314 0.96706 0.98812 1.22041 0.97503 0.91175 0.96351 1.22248 1.03122 0.96885 0.94967 0.76495 0.77332 0.90434 0.88961 0.94528 0.89154 0.89896 0.93598 0.78347 0.92851 0.92610 0.88357 0.85207 0.91102 0.88746 0.88962 0.90101 0.94628 0.90985 0.88923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.40 19.25 29.55 0.57 -0.84 16 2 C -0.21 -1.88 9.86 -37.13 -0.37 -2.25 16 3 C 0.24 2.05 1.09 -93.28 -0.10 1.95 16 4 O -0.55 -4.56 12.96 -35.23 -0.46 -5.02 16 5 C -0.10 -0.90 5.23 -26.65 -0.14 -1.04 16 6 C 0.05 0.51 5.09 -3.84 -0.02 0.49 16 7 N -0.52 -4.95 4.57 -234.67 -1.07 -6.02 16 8 C 0.03 0.26 4.61 -3.83 -0.02 0.24 16 9 C 0.12 1.43 3.17 -26.73 -0.08 1.34 16 10 H 0.10 1.38 6.32 -51.93 -0.33 1.05 16 11 O -0.54 -7.22 13.21 -40.08 -0.53 -7.75 16 12 C 0.04 0.56 4.37 37.16 0.16 0.73 16 13 O -0.32 -6.45 10.09 -23.56 -0.24 -6.69 16 14 C 0.00 -0.04 6.71 -38.78 -0.26 -0.30 16 15 C -0.12 -3.02 9.92 -39.83 -0.40 -3.41 16 16 C -0.12 -3.28 8.61 -39.25 -0.34 -3.62 16 17 C 0.08 2.25 5.56 -106.81 -0.59 1.66 16 18 C -0.46 -12.33 9.05 -37.84 -0.34 -12.67 16 19 H 0.08 1.93 7.86 -52.49 -0.41 1.51 16 20 C 0.07 1.79 5.28 -17.34 -0.09 1.70 16 21 N -0.81 -21.16 10.76 55.54 0.60 -20.56 16 22 Si 0.91 18.89 29.57 -169.99 -5.03 13.87 16 23 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 24 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 25 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 26 C -0.19 -4.72 9.74 -39.25 -0.38 -5.10 16 27 C -0.17 -3.89 8.96 -39.83 -0.36 -4.24 16 28 C 0.06 0.45 5.25 -3.83 -0.02 0.43 16 29 C -0.13 -0.97 5.20 -26.65 -0.14 -1.11 16 30 H 0.22 0.98 7.80 -54.08 -0.42 0.56 16 31 H 0.38 1.72 9.03 45.56 0.41 2.13 16 32 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.04 0.36 7.32 -51.93 -0.38 -0.02 16 35 H 0.09 0.93 6.17 -51.93 -0.32 0.61 16 36 H 0.08 0.68 7.99 -51.93 -0.41 0.27 16 37 H 0.05 0.43 8.12 -51.93 -0.42 0.01 16 38 H 0.37 3.76 9.05 45.56 0.41 4.17 16 39 H 0.05 0.75 7.63 -51.93 -0.40 0.35 16 40 H 0.06 0.81 7.66 -51.93 -0.40 0.41 16 41 H 0.10 2.24 8.06 -52.49 -0.42 1.82 16 42 H 0.13 3.50 6.16 -52.49 -0.32 3.18 16 43 H 0.28 6.62 8.30 -40.82 -0.34 6.29 16 44 H 0.09 2.15 8.06 -52.49 -0.42 1.73 16 45 H 0.09 1.77 6.27 -52.48 -0.33 1.44 16 46 H 0.08 0.56 8.01 -51.93 -0.42 0.15 16 47 H 0.04 0.30 7.32 -51.93 -0.38 -0.08 16 48 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 49 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 LS Contribution 399.11 15.07 6.01 6.01 Total: -1.00 -31.55 399.11 -9.42 -40.97 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: -5.79 Total: 11.23 kcal Atomic # 6 Polarization: -23.11 SS G_CDS: -2.92 Total: -26.03 kcal Atomic # 7 Polarization: -26.11 SS G_CDS: -0.47 Total: -26.58 kcal Atomic # 8 Polarization: -18.24 SS G_CDS: -1.22 Total: -19.46 kcal Atomic # 14 Polarization: 18.89 SS G_CDS: -5.03 Total: 13.87 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -31.55 -9.42 -40.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931142200.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.712 kcal (2) G-P(sol) polarization free energy of solvation -31.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds