Wall clock time and date at job start Wed Apr 1 2020 02:57:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 O 1.42903 * 109.52326 * 198.13036 * 3 2 1 5 5 C 1.53125 * 109.52550 * 318.25795 * 3 2 1 6 6 C 1.53034 * 109.28129 * 62.30959 * 5 3 2 7 7 N 1.46847 * 109.52159 * 59.18225 * 6 5 3 8 8 C 1.46897 * 111.00126 * 174.16063 * 7 6 5 9 9 C 1.52999 * 109.47009 * 294.18990 * 8 7 6 10 10 H 1.09004 * 109.47124 * 57.48957 * 9 8 7 11 11 O 1.42896 * 109.47427 * 297.48620 * 9 8 7 12 12 C 1.53006 * 109.47049 * 177.48314 * 9 8 7 13 13 O 1.42902 * 109.47003 * 185.00257 * 12 9 8 14 14 C 1.35671 * 116.99724 * 180.02562 * 13 12 9 15 15 C 1.39312 * 119.81972 * 180.02562 * 14 13 12 16 16 C 1.36439 * 120.19049 * 179.72153 * 15 14 13 17 17 C 1.40838 * 119.80730 * 0.27917 * 16 15 14 18 18 C 1.41215 * 120.17619 * 180.02562 * 17 16 15 19 19 H 1.08000 * 120.00286 * 208.76866 * 18 17 16 20 20 C 1.39883 * 120.00048 * 28.77155 * 18 17 16 21 21 N 1.30883 * 120.00181 * 9.32014 * 20 18 17 22 22 Si 1.86804 * 120.00040 * 189.31336 * 20 18 17 23 23 H 1.48500 * 109.47098 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46965 * 120.00061 * 22 20 18 25 25 H 1.48492 * 109.47482 * 240.00092 * 22 20 18 26 26 C 1.40825 * 119.64227 * 359.97438 * 17 16 15 27 27 C 1.36440 * 119.81319 * 0.02562 * 26 17 16 28 28 C 1.46845 * 111.20153 * 298.26060 * 7 6 5 29 29 C 1.53040 * 109.52323 * 61.73849 * 28 7 6 30 30 H 4.38551 * 5.44098 * 179.97438 * 4 1 2 31 31 H 0.96695 * 113.99496 * 300.12204 * 4 3 2 32 32 H 1.09001 * 109.49850 * 302.37175 * 5 3 2 33 33 H 1.08999 * 109.53827 * 182.27572 * 5 3 2 34 34 H 1.09003 * 109.46385 * 299.17239 * 6 5 3 35 35 H 1.08992 * 109.45505 * 179.19363 * 6 5 3 36 36 H 1.09001 * 109.47209 * 174.19548 * 8 7 6 37 37 H 1.09004 * 109.47168 * 54.19455 * 8 7 6 38 38 H 0.96704 * 113.99742 * 299.99951 * 11 9 8 39 39 H 1.08996 * 109.47009 * 65.00201 * 12 9 8 40 40 H 1.09000 * 109.47064 * 305.00366 * 12 9 8 41 41 H 1.08002 * 119.90108 * 359.97438 * 15 14 13 42 42 H 1.07996 * 120.09497 * 180.29264 * 16 15 14 43 43 H 0.96998 * 120.00242 * 180.02562 * 21 20 18 44 44 H 1.07998 * 120.09615 * 180.02562 * 26 17 16 45 45 H 1.08006 * 119.90805 * 180.02562 * 27 26 17 46 46 H 1.08998 * 109.46784 * 181.75827 * 28 7 6 47 47 H 1.09007 * 109.46088 * 301.72367 * 28 7 6 48 48 H 1.09003 * 109.50307 * 180.88685 * 29 28 7 49 49 H 1.08994 * 109.50683 * 60.76319 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 8 3.1229 1.2809 0.4191 5 6 3.1582 -1.0760 0.9608 6 6 2.6950 -2.4505 0.4729 7 7 3.2122 -2.6907 -0.8803 8 6 2.9040 -4.0557 -1.3271 9 6 3.6633 -5.0604 -0.4581 10 1 3.3947 -4.9120 0.5878 11 8 5.0693 -4.8644 -0.6213 12 6 3.2939 -6.4832 -0.8825 13 8 3.9115 -7.4197 0.0028 14 6 3.6839 -8.7357 -0.2364 15 6 4.2567 -9.6993 0.5907 16 6 4.0282 -11.0246 0.3606 17 6 3.2154 -11.4175 -0.7204 18 6 2.9733 -12.7870 -0.9654 19 1 2.7775 -13.1293 -1.9709 20 6 2.9871 -13.7002 0.0941 21 7 3.0416 -13.2694 1.3287 22 14 2.9276 -15.5347 -0.2532 23 1 2.8707 -15.7592 -1.7201 24 1 4.1440 -16.1829 0.2995 25 1 1.7214 -16.1204 0.3847 26 6 2.6445 -10.4372 -1.5549 27 6 2.8829 -9.1161 -1.3109 28 6 2.6960 -1.6970 -1.8302 29 6 3.1591 -0.2999 -1.4110 30 1 -1.0503 -0.0003 -0.0003 31 1 2.8362 2.0115 -0.1456 32 1 2.7612 -0.8914 1.9591 33 1 4.2474 -1.0487 0.9916 34 1 1.6056 -2.4819 0.4562 35 1 3.0702 -3.2204 1.1471 36 1 3.2060 -4.1744 -2.3677 37 1 1.8324 -4.2343 -1.2371 38 1 5.3798 -4.9809 -1.5297 39 1 3.6422 -6.6609 -1.8999 40 1 2.2115 -6.6049 -0.8426 41 1 4.8801 -9.3962 1.4190 42 1 4.4692 -11.7701 1.0055 43 1 3.0516 -13.9026 2.0634 44 1 2.0197 -10.7303 -2.3856 45 1 2.4455 -8.3630 -1.9496 46 1 3.0717 -1.9197 -2.8289 47 1 1.6065 -1.7319 -1.8362 48 1 2.7628 0.4391 -2.1074 49 1 4.2483 -0.2601 -1.4182 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931142200.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:47 Heat of formation + Delta-G solvation = -79.631239 kcal Electronic energy + Delta-G solvation = -29248.997989 eV Core-core repulsion = 25141.716866 eV Total energy + Delta-G solvation = -4107.281122 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.01274 -40.53198 -38.95379 -37.90924 -36.91564 -35.14224 -34.17762 -32.72408 -32.08495 -31.82170 -31.02881 -30.46162 -27.28573 -26.35220 -24.84811 -24.19606 -23.06777 -22.45371 -22.07658 -21.76525 -19.26999 -19.24905 -18.75019 -17.89797 -17.55342 -17.32358 -17.04518 -16.68619 -16.24143 -15.99350 -15.84126 -15.72820 -15.54229 -15.22170 -15.08585 -14.80236 -14.20359 -14.11366 -14.04739 -13.89480 -13.59874 -13.31223 -13.07434 -12.82982 -12.80344 -12.68003 -12.59490 -12.40675 -12.35265 -12.32274 -12.07530 -11.77730 -11.63027 -11.58442 -11.57418 -11.54927 -11.18834 -10.94059 -10.90514 -10.84983 -9.56196 -9.31229 -8.85858 -8.53604 -6.25653 0.94201 1.02722 1.40296 1.50778 1.55055 1.68766 1.75485 2.23975 2.31918 2.76476 2.92882 3.20877 3.24791 3.55130 3.68791 3.69388 3.71647 3.89220 3.99669 4.02034 4.18441 4.23336 4.28307 4.34124 4.35986 4.43496 4.46035 4.51268 4.62444 4.70807 4.77716 4.83226 4.85240 4.87891 4.99339 5.03670 5.08190 5.08487 5.21764 5.24384 5.30427 5.59415 5.65387 5.87425 5.96323 6.04592 6.07150 6.27533 6.54888 6.57810 6.68874 6.81064 6.92521 6.97174 7.09865 8.42648 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.030535 B = 0.001654 C = 0.001646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.751411 B =16929.646625 C =17009.291493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.244 4.244 3 C 0.243 3.757 4 O -0.561 6.561 5 C -0.098 4.098 6 C 0.057 3.943 7 N -0.531 5.531 8 C 0.036 3.964 9 C 0.125 3.875 10 H 0.090 0.910 11 O -0.557 6.557 12 C 0.029 3.971 13 O -0.331 6.331 14 C 0.009 3.991 15 C -0.140 4.140 16 C -0.144 4.144 17 C 0.049 3.951 18 C -0.497 4.497 19 H 0.076 0.924 20 C 0.027 3.973 21 N -0.843 5.843 22 Si 0.986 3.014 23 H -0.258 1.258 24 H -0.267 1.267 25 H -0.268 1.268 26 C -0.200 4.200 27 C -0.170 4.170 28 C 0.058 3.942 29 C -0.129 4.129 30 H 0.244 0.756 31 H 0.394 0.606 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.034 0.966 35 H 0.078 0.922 36 H 0.103 0.897 37 H 0.052 0.948 38 H 0.384 0.616 39 H 0.070 0.930 40 H 0.066 0.934 41 H 0.106 0.894 42 H 0.113 0.887 43 H 0.285 0.715 44 H 0.108 0.892 45 H 0.131 0.869 46 H 0.095 0.905 47 H 0.033 0.967 48 H 0.090 0.910 49 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.706 25.596 -6.557 26.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.244 4.244 3 C 0.202 3.798 4 O -0.370 6.370 5 C -0.135 4.135 6 C -0.071 4.071 7 N -0.256 5.256 8 C -0.093 4.093 9 C 0.065 3.935 10 H 0.108 0.892 11 O -0.363 6.363 12 C -0.047 4.047 13 O -0.247 6.247 14 C -0.035 4.035 15 C -0.159 4.159 16 C -0.163 4.163 17 C 0.047 3.953 18 C -0.527 4.527 19 H 0.094 0.906 20 C -0.185 4.185 21 N -0.471 5.471 22 Si 0.807 3.193 23 H -0.181 1.181 24 H -0.191 1.191 25 H -0.193 1.193 26 C -0.219 4.219 27 C -0.188 4.188 28 C -0.069 4.069 29 C -0.167 4.167 30 H 0.260 0.740 31 H 0.244 0.756 32 H 0.090 0.910 33 H 0.101 0.899 34 H 0.052 0.948 35 H 0.096 0.904 36 H 0.121 0.879 37 H 0.070 0.930 38 H 0.233 0.767 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.124 0.876 42 H 0.130 0.870 43 H 0.095 0.905 44 H 0.126 0.874 45 H 0.149 0.851 46 H 0.113 0.887 47 H 0.052 0.948 48 H 0.108 0.892 49 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.837 25.423 -5.062 26.077 hybrid contribution -1.614 -0.864 -0.862 2.024 sum -4.451 24.559 -5.924 25.652 Atomic orbital electron populations 1.25810 0.96814 0.97406 0.99128 1.24141 0.95617 1.02818 1.01821 1.18113 0.81776 0.84654 0.95250 1.86593 1.76051 1.16463 1.57867 1.21469 1.02304 0.91757 0.98014 1.22070 0.97116 0.96894 0.90980 1.61807 1.59819 1.01980 1.02009 1.22609 0.98523 0.87907 1.00222 1.21778 0.82156 0.89085 1.00493 0.89167 1.86612 1.21801 1.93241 1.34651 1.23517 0.97970 0.89208 0.94017 1.85889 1.71150 1.13149 1.54482 1.18726 1.03707 0.82510 0.98552 1.20045 1.03358 0.92160 1.00306 1.21001 1.00515 0.93850 1.00979 1.17991 0.90760 0.94127 0.92416 1.19728 1.45115 0.92540 0.95366 0.90623 1.26743 0.91697 1.06003 0.94052 1.69868 1.38486 1.38371 1.00373 0.85098 0.78699 0.75858 0.79638 1.18117 1.19145 1.19335 1.20869 1.04849 0.92583 1.03632 1.20714 1.02523 0.96769 0.98801 1.22100 0.97374 0.90950 0.96522 1.22210 1.02788 0.97052 0.94601 0.73966 0.75557 0.91034 0.89917 0.94754 0.90352 0.87918 0.92992 0.76724 0.91136 0.91609 0.87622 0.86968 0.90479 0.87426 0.85119 0.88672 0.94841 0.89151 0.89402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.33 19.25 74.32 1.43 -0.90 16 2 C -0.24 -3.93 9.86 31.12 0.31 -3.62 16 3 C 0.24 3.85 1.09 -12.52 -0.01 3.84 16 4 O -0.56 -8.88 12.96 -148.98 -1.93 -10.81 16 5 C -0.10 -1.80 5.23 30.65 0.16 -1.64 16 6 C 0.06 1.07 5.09 86.32 0.44 1.51 16 7 N -0.53 -9.09 4.57 -896.37 -4.09 -13.19 16 8 C 0.04 0.59 4.61 86.30 0.40 0.98 16 9 C 0.12 2.87 3.17 30.60 0.10 2.96 16 10 H 0.09 2.33 6.32 -2.39 -0.02 2.32 16 11 O -0.56 -14.09 13.21 -144.34 -1.91 -16.00 16 12 C 0.03 0.80 4.37 71.98 0.31 1.12 16 13 O -0.33 -13.05 10.09 -85.24 -0.86 -13.91 16 14 C 0.01 0.41 6.71 22.79 0.15 0.56 16 15 C -0.14 -6.96 9.92 22.11 0.22 -6.74 16 16 C -0.14 -7.83 8.61 22.49 0.19 -7.64 16 17 C 0.05 2.69 5.56 -21.28 -0.12 2.57 16 18 C -0.50 -27.06 9.05 23.40 0.21 -26.85 16 19 H 0.08 3.94 7.86 -2.91 -0.02 3.92 16 20 C 0.03 1.38 5.28 85.23 0.45 1.83 16 21 N -0.84 -45.27 10.76 21.82 0.23 -45.03 16 22 Si 0.99 38.99 29.57 68.60 2.03 41.02 16 23 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 24 H -0.27 -10.16 7.11 99.48 0.71 -9.46 16 25 H -0.27 -10.22 7.11 99.48 0.71 -9.51 16 26 C -0.20 -9.69 9.74 22.48 0.22 -9.47 16 27 C -0.17 -7.30 8.96 22.11 0.20 -7.10 16 28 C 0.06 0.78 5.25 86.33 0.45 1.24 16 29 C -0.13 -1.62 5.20 30.65 0.16 -1.46 16 30 H 0.24 1.53 7.80 -4.40 -0.03 1.49 16 31 H 0.39 3.09 9.03 -74.06 -0.67 2.42 16 32 H 0.07 1.35 8.14 -2.39 -0.02 1.34 16 33 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.03 0.65 7.32 -2.39 -0.02 0.63 16 35 H 0.08 1.62 6.17 -2.39 -0.01 1.61 16 36 H 0.10 1.31 7.99 -2.39 -0.02 1.29 16 37 H 0.05 0.82 8.12 -2.38 -0.02 0.80 16 38 H 0.38 6.98 9.05 -74.05 -0.67 6.31 16 39 H 0.07 1.73 7.63 -2.39 -0.02 1.71 16 40 H 0.07 1.71 7.66 -2.39 -0.02 1.69 16 41 H 0.11 4.94 8.06 -2.91 -0.02 4.91 16 42 H 0.11 6.38 6.16 -2.91 -0.02 6.36 16 43 H 0.28 13.86 8.30 -92.71 -0.77 13.09 16 44 H 0.11 4.81 8.06 -2.91 -0.02 4.79 16 45 H 0.13 4.54 6.27 -2.91 -0.02 4.52 16 46 H 0.09 1.02 8.01 -2.39 -0.02 1.00 16 47 H 0.03 0.48 7.32 -2.38 -0.02 0.46 16 48 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 49 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -68.98 399.11 -1.62 -70.60 By element: Atomic # 1 Polarization: 36.49 SS G_CDS: -0.36 Total: 36.13 kcal Atomic # 6 Polarization: -54.09 SS G_CDS: 5.27 Total: -48.82 kcal Atomic # 7 Polarization: -54.36 SS G_CDS: -3.86 Total: -58.22 kcal Atomic # 8 Polarization: -36.02 SS G_CDS: -4.70 Total: -40.72 kcal Atomic # 14 Polarization: 38.99 SS G_CDS: 2.03 Total: 41.02 kcal Total: -68.98 -1.62 -70.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931142200.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.030 kcal (2) G-P(sol) polarization free energy of solvation -68.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds