Wall clock time and date at job start Wed Apr 1 2020 02:58:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50698 * 109.46991 * 2 1 4 4 N 1.30439 * 125.99278 * 269.96087 * 3 2 1 5 5 N 1.39929 * 108.90076 * 180.02562 * 4 3 2 6 6 H 0.97007 * 125.75752 * 180.02562 * 5 4 3 7 7 C 1.34257 * 108.49157 * 359.97438 * 5 4 3 8 8 C 1.38042 * 107.41780 * 0.02562 * 7 5 4 9 9 C 1.47428 * 126.41835 * 180.26423 * 8 7 5 10 10 O 1.21598 * 120.00379 * 179.68712 * 9 8 7 11 11 N 1.34783 * 119.99757 * 359.68651 * 9 8 7 12 12 C 1.46496 * 119.99910 * 180.02562 * 11 9 8 13 13 H 1.09003 * 110.88890 * 31.11701 * 12 11 9 14 14 C 1.54909 * 111.00075 * 267.19434 * 12 11 9 15 15 N 1.47424 * 104.82872 * 204.91720 * 14 12 11 16 16 C 1.36946 * 125.64749 * 204.14894 * 15 14 12 17 17 H 1.08004 * 119.99712 * 179.97438 * 16 15 14 18 18 C 1.38814 * 119.99981 * 359.97438 * 16 15 14 19 19 N 1.31616 * 119.99612 * 359.97438 * 18 16 15 20 20 Si 1.86791 * 120.00030 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47278 * 59.99969 * 20 18 16 22 22 H 1.48496 * 109.47263 * 179.97438 * 20 18 16 23 23 H 1.48507 * 109.47204 * 299.99969 * 20 18 16 24 24 C 1.47026 * 108.70578 * 24.12900 * 15 14 12 25 25 C 1.54315 * 107.26740 * 358.93914 * 24 15 14 26 26 H 1.09007 * 110.72140 * 219.44280 * 25 24 15 27 27 N 1.46506 * 110.87208 * 96.24598 * 25 24 15 28 28 C 1.35313 * 125.86238 * 331.09882 * 27 25 24 29 29 C 1.35358 * 106.17090 * 179.90769 * 28 27 25 30 30 N 1.33766 * 106.49495 * 0.35137 * 29 28 27 31 31 N 1.28633 * 108.89139 * 359.77622 * 30 29 28 32 32 H 1.09001 * 109.47483 * 59.99115 * 1 2 3 33 33 H 1.09001 * 109.47648 * 180.02562 * 1 2 3 34 34 H 1.09005 * 109.46959 * 300.00023 * 1 2 3 35 35 H 1.09001 * 109.46521 * 240.00143 * 2 1 3 36 36 H 1.09000 * 109.47072 * 120.00228 * 2 1 3 37 37 H 1.08008 * 126.29245 * 180.02562 * 7 5 4 38 38 H 0.96997 * 119.99754 * 359.97438 * 11 9 8 39 39 H 1.09001 * 110.36778 * 323.75437 * 14 12 11 40 40 H 1.08998 * 110.36859 * 86.08145 * 14 12 11 41 41 H 0.97005 * 119.99814 * 179.97438 * 19 18 16 42 42 H 1.09004 * 109.88062 * 239.52070 * 24 15 14 43 43 H 1.08999 * 109.88118 * 118.35849 * 24 15 14 44 44 H 1.07996 * 126.91681 * 0.02562 * 28 27 25 45 45 H 1.07998 * 126.75131 * 180.12842 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2885 2.1433 -1.0554 5 7 2.7346 3.4042 -0.6441 6 1 2.9925 4.1331 -1.2299 7 6 2.7445 3.4355 0.6981 8 6 2.3085 2.2037 1.1433 9 6 2.1537 1.7856 2.5486 10 8 1.7527 0.6677 2.8097 11 7 2.4565 2.6425 3.5439 12 6 2.3032 2.2269 4.9402 13 1 2.4792 1.1567 5.0488 14 6 0.9075 2.6191 5.4861 15 7 1.0892 2.7249 6.9453 16 6 0.1019 2.5884 7.8845 17 1 0.3381 2.6836 8.9340 18 6 -1.2025 2.3277 7.4874 19 7 -1.4903 2.2122 6.2083 20 14 -2.5490 2.1407 8.7685 21 1 -2.6581 3.3935 9.5585 22 1 -3.8423 1.8691 8.0912 23 1 -2.2173 1.0116 9.6743 24 6 2.5059 3.0007 7.2253 25 6 3.2413 3.0418 5.8693 26 1 4.2182 2.5643 5.9457 27 7 3.3761 4.4198 5.3902 28 6 2.5293 5.4397 5.6613 29 6 3.0302 6.5247 5.0257 30 7 4.1400 6.1189 4.3988 31 7 4.3173 4.8668 4.6345 32 1 -0.3634 0.5140 -0.8899 33 1 -0.3634 -1.0276 0.0005 34 1 -0.3633 0.5139 0.8900 35 1 1.8933 -0.5138 -0.8900 36 1 1.8934 -0.5139 0.8900 37 1 3.0393 4.2709 1.3159 38 1 2.7767 3.5341 3.3355 39 1 0.5940 3.5776 5.0724 40 1 0.1767 1.8457 5.2499 41 1 -2.4018 2.0296 5.9309 42 1 2.9215 2.2089 7.8486 43 1 2.6038 3.9621 7.7295 44 1 1.6348 5.3972 6.2651 45 1 2.6137 7.5211 5.0222 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001069966905.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:04 Heat of formation + Delta-G solvation = 153.216785 kcal Electronic energy + Delta-G solvation = -31274.305070 eV Core-core repulsion = 27138.166154 eV Total energy + Delta-G solvation = -4136.138915 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.29678 -42.51027 -40.61359 -39.11294 -35.87645 -35.28993 -34.71764 -33.45159 -31.93721 -31.74345 -31.34224 -30.18080 -29.00714 -26.69894 -25.06393 -24.57447 -23.86563 -23.54435 -22.25824 -21.54425 -21.32244 -20.62133 -19.69096 -19.03124 -18.53850 -17.81914 -17.09083 -16.79130 -16.39790 -16.23889 -15.91973 -15.77958 -15.63692 -15.28529 -15.16492 -15.01876 -14.74579 -14.41057 -14.32994 -14.01822 -13.86233 -13.35117 -13.31477 -13.15024 -12.75592 -12.71763 -12.48080 -12.33387 -12.26963 -12.21394 -12.09638 -11.88620 -11.83395 -11.78749 -11.14367 -10.92946 -10.73520 -10.60594 -10.28474 -10.18943 -9.83796 -8.96144 -7.77222 -5.24403 0.43001 0.63548 1.02549 1.29384 1.51438 1.52982 1.59285 1.64070 1.70643 2.10431 2.37926 2.50101 3.21231 3.35762 3.36992 3.42717 3.57681 3.64056 3.74121 3.94851 4.04850 4.11306 4.21710 4.31684 4.34272 4.38037 4.41631 4.44390 4.52855 4.64946 4.73240 4.81323 4.82641 5.01675 5.11800 5.20200 5.27950 5.30073 5.41141 5.47517 5.51426 5.66853 5.76575 6.17375 6.24638 6.36695 6.54728 7.04755 7.23680 7.53502 7.72443 8.30745 9.23028 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.009175 B = 0.004398 C = 0.003263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3051.017912 B = 6365.705811 C = 8580.027020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.047 4.047 3 C 0.128 3.872 4 N -0.312 5.312 5 N -0.441 5.441 6 H 0.462 0.538 7 C 0.133 3.867 8 C -0.315 4.315 9 C 0.592 3.408 10 O -0.567 6.567 11 N -0.706 5.706 12 C 0.125 3.875 13 H 0.108 0.892 14 C 0.160 3.840 15 N -0.614 5.614 16 C -0.236 4.236 17 H 0.092 0.908 18 C -0.057 4.057 19 N -0.944 5.944 20 Si 0.975 3.025 21 H -0.275 1.275 22 H -0.302 1.302 23 H -0.278 1.278 24 C 0.129 3.871 25 C 0.132 3.868 26 H 0.152 0.848 27 N -0.275 5.275 28 C -0.029 4.029 29 C -0.054 4.054 30 N -0.289 5.289 31 N -0.108 5.108 32 H 0.058 0.942 33 H 0.078 0.922 34 H 0.032 0.968 35 H 0.094 0.906 36 H 0.084 0.916 37 H 0.208 0.792 38 H 0.399 0.601 39 H 0.000 1.000 40 H 0.073 0.927 41 H 0.245 0.755 42 H 0.074 0.926 43 H 0.052 0.948 44 H 0.183 0.817 45 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.206 5.275 -8.857 14.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.087 4.087 3 C -0.040 4.040 4 N -0.135 5.135 5 N -0.147 5.147 6 H 0.311 0.689 7 C -0.022 4.022 8 C -0.330 4.330 9 C 0.381 3.619 10 O -0.446 6.446 11 N -0.358 5.358 12 C 0.017 3.983 13 H 0.125 0.875 14 C 0.034 3.966 15 N -0.341 5.341 16 C -0.364 4.364 17 H 0.110 0.890 18 C -0.251 4.251 19 N -0.593 5.593 20 Si 0.804 3.196 21 H -0.201 1.201 22 H -0.229 1.229 23 H -0.204 1.204 24 C 0.003 3.997 25 C 0.029 3.971 26 H 0.169 0.831 27 N -0.069 5.069 28 C -0.180 4.180 29 C -0.211 4.211 30 N -0.155 5.155 31 N -0.087 5.087 32 H 0.077 0.923 33 H 0.096 0.904 34 H 0.051 0.949 35 H 0.113 0.887 36 H 0.103 0.897 37 H 0.225 0.775 38 H 0.235 0.765 39 H 0.018 0.982 40 H 0.091 0.909 41 H 0.055 0.945 42 H 0.092 0.908 43 H 0.070 0.930 44 H 0.200 0.800 45 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 11.051 4.124 -10.704 15.928 hybrid contribution -1.897 0.921 1.890 2.832 sum 9.155 5.045 -8.814 13.672 Atomic orbital electron populations 1.21562 0.93836 1.02795 1.00914 1.20109 0.96620 0.87855 1.04073 1.22632 0.95013 0.97553 0.88764 1.77081 1.22573 0.91639 1.22203 1.46086 1.50208 1.13039 1.05385 0.68934 1.23394 0.94659 0.98073 0.86106 1.20263 1.21957 0.97322 0.93505 1.17542 0.75904 0.84108 0.84348 1.90741 1.47520 1.21713 1.84656 1.45469 1.68261 1.17149 1.04908 1.22627 0.96333 0.99404 0.79952 0.87453 1.21931 0.93016 0.98801 0.82875 1.44514 1.03272 1.84182 1.02131 1.19354 0.87100 1.41276 0.88698 0.89005 1.25553 0.99578 1.02178 0.97759 1.70034 1.18410 1.56159 1.14664 0.85203 0.78124 0.78241 0.78034 1.20104 1.22884 1.20394 1.21804 0.84662 1.01034 0.92186 1.23106 1.02553 0.76330 0.95141 0.83080 1.47423 1.16633 1.10321 1.32548 1.23915 0.99988 0.87935 1.06192 1.24022 0.94961 1.01598 1.00527 1.75045 1.16976 1.02536 1.20955 1.78257 1.12422 1.06631 1.11369 0.92288 0.90354 0.94913 0.88735 0.89738 0.77496 0.76493 0.98245 0.90918 0.94535 0.90829 0.92998 0.79986 0.76606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.60 9.89 71.98 0.71 -2.88 16 2 C -0.05 -1.29 5.96 29.85 0.18 -1.12 16 3 C 0.13 3.72 6.52 43.52 0.28 4.00 16 4 N -0.31 -8.06 12.63 -46.68 -0.59 -8.65 16 5 N -0.44 -8.25 7.29 -56.31 -0.41 -8.66 16 6 H 0.46 4.73 8.96 -213.42 -1.91 2.82 16 7 C 0.13 2.81 11.52 84.28 0.97 3.78 16 8 C -0.32 -9.31 6.13 -20.15 -0.12 -9.43 16 9 C 0.59 20.91 7.81 86.66 0.68 21.59 16 10 O -0.57 -23.93 14.56 -4.02 -0.06 -23.99 16 11 N -0.71 -22.77 5.15 -439.22 -2.26 -25.03 16 12 C 0.12 4.38 3.29 46.38 0.15 4.53 16 13 H 0.11 4.05 7.54 -2.39 -0.02 4.03 16 14 C 0.16 7.17 5.17 86.86 0.45 7.62 16 15 N -0.61 -26.89 3.40 -691.98 -2.35 -29.24 16 16 C -0.24 -11.68 10.27 84.03 0.86 -10.81 16 17 H 0.09 4.26 7.83 -2.91 -0.02 4.24 16 18 C -0.06 -3.01 5.49 84.86 0.47 -2.55 16 19 N -0.94 -53.78 10.09 21.65 0.22 -53.56 16 20 Si 0.98 43.05 29.55 68.60 2.03 45.08 16 21 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 22 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 23 H -0.28 -11.90 7.11 99.48 0.71 -11.20 16 24 C 0.13 4.19 6.29 86.73 0.55 4.73 16 25 C 0.13 3.74 3.96 46.17 0.18 3.93 16 26 H 0.15 3.45 8.14 -2.38 -0.02 3.43 16 27 N -0.28 -7.65 2.38 -321.54 -0.77 -8.41 16 28 C -0.03 -0.80 9.36 83.49 0.78 -0.01 16 29 C -0.05 -1.30 12.05 83.73 1.01 -0.29 16 30 N -0.29 -7.89 12.41 -58.26 -0.72 -8.62 16 31 N -0.11 -3.03 12.28 37.02 0.45 -2.58 16 32 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.03 1.07 8.14 -2.38 -0.02 1.05 16 35 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 36 H 0.08 2.61 6.57 -2.39 -0.02 2.60 16 37 H 0.21 3.21 7.46 -2.91 -0.02 3.19 16 38 H 0.40 11.50 5.72 -92.71 -0.53 10.97 16 39 H 0.00 -0.02 7.58 -2.39 -0.02 -0.03 16 40 H 0.07 4.05 5.87 -2.39 -0.01 4.04 16 41 H 0.24 13.95 8.31 -92.70 -0.77 13.18 16 42 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 43 H 0.05 1.62 7.19 -2.39 -0.02 1.60 16 44 H 0.18 5.52 7.72 -2.91 -0.02 5.50 16 45 H 0.22 3.61 8.06 -2.91 -0.02 3.58 16 Total: -1.00 -69.41 372.45 1.31 -68.10 By element: Atomic # 1 Polarization: 33.85 SS G_CDS: -1.38 Total: 32.47 kcal Atomic # 6 Polarization: 15.94 SS G_CDS: 7.15 Total: 23.09 kcal Atomic # 7 Polarization: -138.32 SS G_CDS: -6.43 Total: -144.75 kcal Atomic # 8 Polarization: -23.93 SS G_CDS: -0.06 Total: -23.99 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Total: -69.41 1.31 -68.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001069966905.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 221.319 kcal (2) G-P(sol) polarization free energy of solvation -69.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 151.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.102 kcal (6) G-S(sol) free energy of system = (1) + (5) 153.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds