Wall clock time and date at job start Wed Apr 1 2020 02:50:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30857 * 125.41848 * 2 1 4 4 C 1.33317 * 109.68077 * 180.02562 * 3 2 1 5 5 C 1.36656 * 107.79344 * 0.02562 * 4 3 2 6 6 C 1.46760 * 126.85087 * 180.02562 * 5 4 3 7 7 O 1.21687 * 120.00274 * 174.99453 * 6 5 4 8 8 N 1.34778 * 120.00200 * 355.00284 * 6 5 4 9 9 C 1.46495 * 120.00400 * 185.09427 * 8 6 5 10 10 H 1.09003 * 110.88824 * 31.11747 * 9 8 6 11 11 C 1.54906 * 111.00562 * 267.19051 * 9 8 6 12 12 N 1.47426 * 104.83423 * 204.91534 * 11 9 8 13 13 C 1.36941 * 125.64615 * 204.08447 * 12 11 9 14 14 H 1.07999 * 119.99608 * 180.02562 * 13 12 11 15 15 C 1.38807 * 119.99866 * 0.05387 * 13 12 11 16 16 N 1.31614 * 120.00555 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 119.99733 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47102 * 89.99937 * 17 15 13 19 19 H 1.48493 * 109.47454 * 209.99990 * 17 15 13 20 20 H 1.48503 * 109.46848 * 330.00379 * 17 15 13 21 21 C 1.47018 * 108.69907 * 24.13150 * 12 11 9 22 22 C 1.54313 * 107.27434 * 358.93833 * 21 12 11 23 23 H 1.09011 * 110.72377 * 219.44413 * 22 21 12 24 24 N 1.46502 * 110.72057 * 96.17552 * 22 21 12 25 25 C 1.35311 * 125.86610 * 331.47303 * 24 22 21 26 26 C 1.35347 * 106.17546 * 180.02562 * 25 24 22 27 27 N 1.33767 * 106.49749 * 0.02562 * 26 25 24 28 28 N 1.28631 * 108.88625 * 359.73420 * 27 26 25 29 29 N 1.34492 * 125.41548 * 179.69805 * 2 1 3 30 30 C 1.46506 * 126.47602 * 359.96955 * 29 2 1 31 31 H 1.08994 * 109.47362 * 90.02566 * 1 2 3 32 32 H 1.09004 * 109.47340 * 330.02847 * 1 2 3 33 33 H 1.08998 * 109.47504 * 210.02701 * 1 2 3 34 34 H 1.08006 * 126.10536 * 180.02562 * 4 3 2 35 35 H 0.97000 * 119.99634 * 5.08689 * 8 6 5 36 36 H 1.08996 * 110.36971 * 323.75870 * 11 9 8 37 37 H 1.09000 * 110.36591 * 86.07711 * 11 9 8 38 38 H 0.97003 * 120.00131 * 179.97438 * 16 15 13 39 39 H 1.09005 * 109.88049 * 239.51653 * 21 12 11 40 40 H 1.08993 * 110.01163 * 118.43488 * 21 12 11 41 41 H 1.07997 * 126.91092 * 0.02562 * 25 24 22 42 42 H 1.08004 * 126.75195 * 179.97438 * 26 25 24 43 43 H 1.08994 * 109.46598 * 95.27557 * 30 29 2 44 44 H 1.09000 * 109.47326 * 215.27837 * 30 29 2 45 45 H 1.09001 * 109.46712 * 335.27859 * 30 29 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2653 1.0664 0.0000 4 6 3.5485 0.7048 -0.0006 5 6 3.5975 -0.6609 -0.0015 6 6 4.8027 -1.4984 -0.0019 7 8 4.7034 -2.7077 0.0892 8 7 6.0197 -0.9280 -0.1029 9 6 7.2150 -1.7674 -0.2157 10 1 6.9880 -2.6995 -0.7332 11 6 7.8346 -2.0414 1.1774 12 7 9.2569 -2.3219 0.9094 13 6 10.0921 -3.0503 1.7139 14 1 11.1228 -3.1994 1.4280 15 6 9.6137 -3.5973 2.8966 16 7 8.3576 -3.4157 3.2450 17 14 10.7528 -4.5914 3.9937 18 1 11.4135 -3.6877 4.9695 19 1 9.9660 -5.6177 4.7236 20 1 11.7847 -5.2591 3.1601 21 6 9.6302 -1.6893 -0.3641 22 6 8.3657 -1.0044 -0.9236 23 1 8.3046 -1.1310 -2.0046 24 7 8.3437 0.4159 -0.5647 25 6 8.9127 0.9650 0.5332 26 6 8.6515 2.2915 0.4698 27 7 7.9442 2.4864 -0.6488 28 7 7.7833 1.3563 -1.2418 29 7 2.2863 -1.0961 0.0058 30 6 1.8310 -2.4885 0.0137 31 1 -0.3634 -0.0005 -1.0276 32 1 -0.3634 0.8903 0.5134 33 1 -0.3634 -0.8897 0.5142 34 1 4.3978 1.3721 -0.0003 35 1 6.1041 0.0383 -0.1010 36 1 7.7348 -1.1639 1.8162 37 1 7.3584 -2.9053 1.6411 38 1 8.0232 -3.7983 4.0713 39 1 9.9826 -2.4464 -1.0648 40 1 10.4108 -0.9472 -0.1972 41 1 9.4644 0.4487 1.3049 42 1 8.9538 3.0445 1.1826 43 1 1.8074 -2.8688 -1.0074 44 1 2.5157 -3.0913 0.6103 45 1 0.8310 -2.5412 0.4443 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070007911.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:50:10 Heat of formation + Delta-G solvation = 172.169978 kcal Electronic energy + Delta-G solvation = -31165.009278 eV Core-core repulsion = 27029.692234 eV Total energy + Delta-G solvation = -4135.317043 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.08312 -42.29438 -39.43258 -37.78126 -34.58423 -34.02479 -33.45205 -32.09768 -31.72821 -30.68938 -29.18794 -28.13167 -27.33244 -26.65766 -24.95160 -23.16792 -22.50777 -22.34629 -20.93390 -20.26668 -20.09278 -19.76236 -18.12185 -17.43887 -17.08385 -16.33672 -16.18672 -15.77730 -15.39122 -14.99364 -14.67725 -14.33220 -14.29831 -14.06903 -13.84199 -13.53362 -13.47736 -13.28842 -13.00361 -12.96635 -12.73826 -12.56988 -12.47531 -12.43189 -11.95002 -11.48086 -11.40899 -11.06302 -10.83764 -10.73918 -10.53749 -10.40210 -10.23033 -10.03002 -9.88383 -9.78779 -9.72471 -9.09700 -8.88206 -8.84132 -8.46021 -7.16956 -5.87140 -3.34068 1.30573 1.86540 2.36419 2.56117 2.76799 2.82213 3.28519 3.33348 3.36639 3.36837 3.42970 4.21105 4.26937 4.48434 4.60313 4.66763 4.66907 4.86550 4.90093 5.03103 5.05361 5.17981 5.26061 5.29034 5.36322 5.39020 5.45752 5.47127 5.55162 5.60926 5.71329 5.75387 6.03983 6.07797 6.09076 6.15215 6.40048 6.43341 6.49666 6.89995 6.96041 7.10222 7.35779 7.53741 7.62848 7.85606 8.07481 8.29404 8.75314 8.94209 9.55178 10.12322 11.15802 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.010380 B = 0.003912 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2696.816876 B = 7154.834923 C = 9052.105725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.221 3.779 3 N -0.492 5.492 4 C 0.043 3.957 5 C -0.082 4.082 6 C 0.597 3.403 7 O -0.536 6.536 8 N -0.702 5.702 9 C 0.114 3.886 10 H 0.118 0.882 11 C 0.145 3.855 12 N -0.598 5.598 13 C -0.237 4.237 14 H 0.083 0.917 15 C -0.001 4.001 16 N -0.914 5.914 17 Si 0.918 3.082 18 H -0.287 1.287 19 H -0.289 1.289 20 H -0.280 1.280 21 C 0.129 3.871 22 C 0.117 3.883 23 H 0.121 0.879 24 N -0.278 5.278 25 C -0.018 4.018 26 C -0.067 4.067 27 N -0.275 5.275 28 N -0.102 5.102 29 N -0.423 5.423 30 C 0.067 3.933 31 H 0.083 0.917 32 H 0.093 0.907 33 H 0.075 0.925 34 H 0.175 0.825 35 H 0.399 0.601 36 H 0.022 0.978 37 H 0.123 0.877 38 H 0.256 0.744 39 H 0.056 0.944 40 H 0.043 0.957 41 H 0.194 0.806 42 H 0.187 0.813 43 H 0.080 0.920 44 H 0.105 0.895 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.036 4.867 -6.687 13.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.041 4.041 3 N -0.211 5.211 4 C -0.112 4.112 5 C -0.199 4.199 6 C 0.384 3.616 7 O -0.414 6.414 8 N -0.354 5.354 9 C 0.007 3.993 10 H 0.135 0.865 11 C 0.019 3.981 12 N -0.325 5.325 13 C -0.364 4.364 14 H 0.101 0.899 15 C -0.198 4.198 16 N -0.560 5.560 17 Si 0.748 3.252 18 H -0.214 1.214 19 H -0.215 1.215 20 H -0.205 1.205 21 C 0.002 3.998 22 C 0.014 3.986 23 H 0.139 0.861 24 N -0.072 5.072 25 C -0.169 4.169 26 C -0.224 4.224 27 N -0.141 5.141 28 N -0.081 5.081 29 N -0.104 5.104 30 C -0.075 4.075 31 H 0.102 0.898 32 H 0.112 0.888 33 H 0.094 0.906 34 H 0.192 0.808 35 H 0.234 0.766 36 H 0.040 0.960 37 H 0.140 0.860 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.060 0.940 41 H 0.211 0.789 42 H 0.204 0.796 43 H 0.098 0.902 44 H 0.123 0.877 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -11.278 4.796 -7.708 14.477 hybrid contribution 1.719 -1.162 1.603 2.622 sum -9.558 3.634 -6.105 11.910 Atomic orbital electron populations 1.20253 0.84440 1.04280 1.03774 1.23423 0.95880 0.81227 1.03557 1.70093 1.02065 1.28046 1.20939 1.22597 0.95110 0.91301 1.02148 1.20725 0.85320 0.94861 1.18982 1.16654 0.81886 0.86626 0.76479 1.90817 1.86669 1.13905 1.50032 1.45395 1.05141 1.10336 1.74503 1.23093 0.81761 0.93027 1.01410 0.86467 1.22413 0.84101 1.02566 0.89014 1.44392 1.07418 1.60716 1.20004 1.19009 0.92228 1.25365 0.99821 0.89916 1.24832 0.96565 1.00410 0.97983 1.69746 1.13223 1.48587 1.24489 0.86032 0.79321 0.79483 0.80347 1.21405 1.21523 1.20512 1.21658 0.91715 0.95761 0.90665 1.23220 0.99789 0.74032 1.01582 0.86100 1.47455 1.34754 1.09094 1.15890 1.23897 1.03850 0.94764 0.94416 1.23555 1.04206 0.95445 0.99184 1.75059 1.15831 1.16216 1.06976 1.78276 1.18467 0.91319 1.20071 1.45036 1.05073 1.08324 1.51991 1.22271 1.01832 0.78822 1.04552 0.89808 0.88810 0.90591 0.80767 0.76561 0.95975 0.85976 0.93283 0.92642 0.93961 0.78888 0.79641 0.90167 0.87658 0.89479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.53 10.17 36.00 0.37 -0.16 16 2 C 0.22 2.82 7.88 -155.62 -1.23 1.59 16 3 N -0.49 -7.51 11.20 -10.59 -0.12 -7.63 16 4 C 0.04 0.67 11.37 -17.48 -0.20 0.47 16 5 C -0.08 -1.31 6.91 -82.14 -0.57 -1.88 16 6 C 0.60 10.57 7.78 -12.82 -0.10 10.47 16 7 O -0.54 -10.72 14.68 5.20 0.08 -10.64 16 8 N -0.70 -11.82 5.15 -53.01 -0.27 -12.09 16 9 C 0.11 2.01 3.25 -65.79 -0.21 1.80 16 10 H 0.12 2.14 7.62 -51.93 -0.40 1.74 16 11 C 0.14 3.16 5.17 -2.53 -0.01 3.14 16 12 N -0.60 -13.07 3.39 -170.09 -0.58 -13.65 16 13 C -0.24 -5.84 10.27 -15.06 -0.15 -6.00 16 14 H 0.08 1.96 7.83 -52.49 -0.41 1.55 16 15 C 0.00 -0.02 5.49 -17.43 -0.10 -0.12 16 16 N -0.91 -24.92 10.09 55.49 0.56 -24.36 16 17 Si 0.92 20.59 29.55 -169.99 -5.02 15.57 16 18 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 19 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 21 C 0.13 2.21 6.27 -3.07 -0.02 2.19 16 22 C 0.12 1.79 3.97 -66.10 -0.26 1.53 16 23 H 0.12 1.59 8.14 -51.92 -0.42 1.16 16 24 N -0.28 -4.33 2.38 -52.99 -0.13 -4.46 16 25 C -0.02 -0.27 9.35 -17.05 -0.16 -0.43 16 26 C -0.07 -0.96 12.05 -17.74 -0.21 -1.17 16 27 N -0.27 -4.49 12.41 30.23 0.38 -4.11 16 28 N -0.10 -1.67 12.30 60.35 0.74 -0.93 16 29 N -0.42 -5.76 3.17 -117.27 -0.37 -6.13 16 30 C 0.07 0.70 10.43 59.85 0.62 1.33 16 31 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.08 0.42 6.95 -51.93 -0.36 0.06 16 34 H 0.18 2.52 7.46 -52.48 -0.39 2.13 16 35 H 0.40 6.49 5.76 -40.82 -0.23 6.25 16 36 H 0.02 0.52 7.59 -51.93 -0.39 0.13 16 37 H 0.12 3.22 5.87 -51.93 -0.31 2.91 16 38 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 39 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.04 0.71 7.16 -51.93 -0.37 0.34 16 41 H 0.19 3.08 7.70 -52.49 -0.40 2.68 16 42 H 0.19 2.05 8.06 -52.48 -0.42 1.63 16 43 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.10 1.34 6.71 -51.93 -0.35 0.99 16 45 H 0.09 0.60 6.86 -51.93 -0.36 0.25 16 LS Contribution 370.59 15.07 5.58 5.58 Total: -1.00 -31.55 370.59 -7.03 -38.58 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: -5.64 Total: 11.52 kcal Atomic # 6 Polarization: 14.98 SS G_CDS: -2.23 Total: 12.75 kcal Atomic # 7 Polarization: -73.57 SS G_CDS: 0.21 Total: -73.36 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: 0.08 Total: -10.64 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.55 -7.03 -38.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070007911.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 210.751 kcal (2) G-P(sol) polarization free energy of solvation -31.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 179.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 172.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds