Wall clock time and date at job start Wed Apr 1 2020 02:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30857 * 125.41848 * 2 1 4 4 C 1.33317 * 109.68077 * 180.02562 * 3 2 1 5 5 C 1.36656 * 107.79344 * 0.02562 * 4 3 2 6 6 C 1.46760 * 126.85087 * 180.02562 * 5 4 3 7 7 O 1.21687 * 120.00274 * 174.99453 * 6 5 4 8 8 N 1.34778 * 120.00200 * 355.00284 * 6 5 4 9 9 C 1.46495 * 120.00400 * 185.09427 * 8 6 5 10 10 H 1.09003 * 110.88824 * 31.11747 * 9 8 6 11 11 C 1.54906 * 111.00562 * 267.19051 * 9 8 6 12 12 N 1.47426 * 104.83423 * 204.91534 * 11 9 8 13 13 C 1.36941 * 125.64615 * 204.08447 * 12 11 9 14 14 H 1.07999 * 119.99608 * 180.02562 * 13 12 11 15 15 C 1.38807 * 119.99866 * 0.05387 * 13 12 11 16 16 N 1.31614 * 120.00555 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 119.99733 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47102 * 89.99937 * 17 15 13 19 19 H 1.48493 * 109.47454 * 209.99990 * 17 15 13 20 20 H 1.48503 * 109.46848 * 330.00379 * 17 15 13 21 21 C 1.47018 * 108.69907 * 24.13150 * 12 11 9 22 22 C 1.54313 * 107.27434 * 358.93833 * 21 12 11 23 23 H 1.09011 * 110.72377 * 219.44413 * 22 21 12 24 24 N 1.46502 * 110.72057 * 96.17552 * 22 21 12 25 25 C 1.35311 * 125.86610 * 331.47303 * 24 22 21 26 26 C 1.35347 * 106.17546 * 180.02562 * 25 24 22 27 27 N 1.33767 * 106.49749 * 0.02562 * 26 25 24 28 28 N 1.28631 * 108.88625 * 359.73420 * 27 26 25 29 29 N 1.34492 * 125.41548 * 179.69805 * 2 1 3 30 30 C 1.46506 * 126.47602 * 359.96955 * 29 2 1 31 31 H 1.08994 * 109.47362 * 90.02566 * 1 2 3 32 32 H 1.09004 * 109.47340 * 330.02847 * 1 2 3 33 33 H 1.08998 * 109.47504 * 210.02701 * 1 2 3 34 34 H 1.08006 * 126.10536 * 180.02562 * 4 3 2 35 35 H 0.97000 * 119.99634 * 5.08689 * 8 6 5 36 36 H 1.08996 * 110.36971 * 323.75870 * 11 9 8 37 37 H 1.09000 * 110.36591 * 86.07711 * 11 9 8 38 38 H 0.97003 * 120.00131 * 179.97438 * 16 15 13 39 39 H 1.09005 * 109.88049 * 239.51653 * 21 12 11 40 40 H 1.08993 * 110.01163 * 118.43488 * 21 12 11 41 41 H 1.07997 * 126.91092 * 0.02562 * 25 24 22 42 42 H 1.08004 * 126.75195 * 179.97438 * 26 25 24 43 43 H 1.08994 * 109.46598 * 95.27557 * 30 29 2 44 44 H 1.09000 * 109.47326 * 215.27837 * 30 29 2 45 45 H 1.09001 * 109.46712 * 335.27859 * 30 29 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2653 1.0664 0.0000 4 6 3.5485 0.7048 -0.0006 5 6 3.5975 -0.6609 -0.0015 6 6 4.8027 -1.4984 -0.0019 7 8 4.7034 -2.7077 0.0892 8 7 6.0197 -0.9280 -0.1029 9 6 7.2150 -1.7674 -0.2157 10 1 6.9880 -2.6995 -0.7332 11 6 7.8346 -2.0414 1.1774 12 7 9.2569 -2.3219 0.9094 13 6 10.0921 -3.0503 1.7139 14 1 11.1228 -3.1994 1.4280 15 6 9.6137 -3.5973 2.8966 16 7 8.3576 -3.4157 3.2450 17 14 10.7528 -4.5914 3.9937 18 1 11.4135 -3.6877 4.9695 19 1 9.9660 -5.6177 4.7236 20 1 11.7847 -5.2591 3.1601 21 6 9.6302 -1.6893 -0.3641 22 6 8.3657 -1.0044 -0.9236 23 1 8.3046 -1.1310 -2.0046 24 7 8.3437 0.4159 -0.5647 25 6 8.9127 0.9650 0.5332 26 6 8.6515 2.2915 0.4698 27 7 7.9442 2.4864 -0.6488 28 7 7.7833 1.3563 -1.2418 29 7 2.2863 -1.0961 0.0058 30 6 1.8310 -2.4885 0.0137 31 1 -0.3634 -0.0005 -1.0276 32 1 -0.3634 0.8903 0.5134 33 1 -0.3634 -0.8897 0.5142 34 1 4.3978 1.3721 -0.0003 35 1 6.1041 0.0383 -0.1010 36 1 7.7348 -1.1639 1.8162 37 1 7.3584 -2.9053 1.6411 38 1 8.0232 -3.7983 4.0713 39 1 9.9826 -2.4464 -1.0648 40 1 10.4108 -0.9472 -0.1972 41 1 9.4644 0.4487 1.3049 42 1 8.9538 3.0445 1.1826 43 1 1.8074 -2.8688 -1.0074 44 1 2.5157 -3.0913 0.6103 45 1 0.8310 -2.5412 0.4443 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070007911.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:50:09 Heat of formation + Delta-G solvation = 150.661777 kcal Electronic energy + Delta-G solvation = -31165.941943 eV Core-core repulsion = 27029.692234 eV Total energy + Delta-G solvation = -4136.249709 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -44.32971 -43.38107 -40.85543 -39.26933 -36.01073 -35.32963 -34.75382 -33.50708 -32.92541 -31.92539 -30.67164 -29.48147 -28.49219 -27.72797 -26.61633 -24.44837 -23.89150 -23.58934 -22.34945 -21.58447 -21.51123 -20.86126 -19.45964 -18.89373 -18.61467 -17.47569 -17.25843 -17.20806 -16.81586 -16.43938 -16.02529 -15.72705 -15.64683 -15.58321 -14.94290 -14.81097 -14.59757 -14.40545 -14.24417 -14.20019 -13.95520 -13.80678 -13.45176 -13.30911 -13.18707 -13.09488 -12.82743 -12.74799 -12.35978 -12.32169 -12.09373 -11.92080 -11.81901 -11.62163 -11.20467 -11.06484 -10.82241 -10.78315 -10.32341 -10.29210 -9.60291 -9.00471 -7.80869 -5.28137 0.12432 0.60419 1.19235 1.39188 1.49629 1.50286 1.58697 1.62617 1.65024 2.10100 2.13436 2.47082 3.13570 3.29110 3.31802 3.36180 3.47833 3.59023 3.70877 3.80444 3.86749 3.88328 4.14696 4.20984 4.25854 4.26849 4.31462 4.37800 4.49648 4.67606 4.70078 4.73268 4.77516 4.78937 4.99994 5.02530 5.08417 5.27340 5.30729 5.38006 5.48288 5.63505 5.70452 6.01053 6.15512 6.21761 6.74505 6.92530 7.01666 7.51134 7.68545 8.26700 9.19966 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.010380 B = 0.003912 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2696.816876 B = 7154.834923 C = 9052.105725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.235 3.765 3 N -0.522 5.522 4 C 0.044 3.956 5 C -0.111 4.111 6 C 0.595 3.405 7 O -0.567 6.567 8 N -0.696 5.696 9 C 0.125 3.875 10 H 0.113 0.887 11 C 0.161 3.839 12 N -0.613 5.613 13 C -0.233 4.233 14 H 0.094 0.906 15 C -0.059 4.059 16 N -0.946 5.946 17 Si 0.977 3.023 18 H -0.287 1.287 19 H -0.302 1.302 20 H -0.266 1.266 21 C 0.129 3.871 22 C 0.131 3.869 23 H 0.154 0.846 24 N -0.278 5.278 25 C -0.028 4.028 26 C -0.055 4.055 27 N -0.290 5.290 28 N -0.109 5.109 29 N -0.428 5.428 30 C 0.064 3.936 31 H 0.105 0.895 32 H 0.101 0.899 33 H 0.102 0.898 34 H 0.177 0.823 35 H 0.402 0.598 36 H -0.002 1.002 37 H 0.075 0.925 38 H 0.245 0.755 39 H 0.077 0.923 40 H 0.054 0.946 41 H 0.186 0.814 42 H 0.218 0.782 43 H 0.091 0.909 44 H 0.077 0.923 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.604 5.689 -8.012 14.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.028 4.028 3 N -0.241 5.241 4 C -0.111 4.111 5 C -0.228 4.228 6 C 0.384 3.616 7 O -0.447 6.447 8 N -0.347 5.347 9 C 0.018 3.982 10 H 0.130 0.870 11 C 0.034 3.966 12 N -0.340 5.340 13 C -0.362 4.362 14 H 0.112 0.888 15 C -0.252 4.252 16 N -0.595 5.595 17 Si 0.806 3.194 18 H -0.214 1.214 19 H -0.229 1.229 20 H -0.190 1.190 21 C 0.003 3.997 22 C 0.029 3.971 23 H 0.172 0.828 24 N -0.072 5.072 25 C -0.180 4.180 26 C -0.212 4.212 27 N -0.156 5.156 28 N -0.088 5.088 29 N -0.108 5.108 30 C -0.076 4.076 31 H 0.123 0.877 32 H 0.120 0.880 33 H 0.121 0.879 34 H 0.194 0.806 35 H 0.239 0.761 36 H 0.016 0.984 37 H 0.093 0.907 38 H 0.054 0.946 39 H 0.095 0.905 40 H 0.072 0.928 41 H 0.203 0.797 42 H 0.234 0.766 43 H 0.109 0.891 44 H 0.096 0.904 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -11.822 5.640 -9.077 15.936 hybrid contribution 1.839 -1.351 2.000 3.034 sum -9.983 4.290 -7.077 12.967 Atomic orbital electron populations 1.20554 0.80545 1.06011 1.05624 1.24448 0.97750 0.80255 1.00306 1.70128 1.02001 1.29372 1.22629 1.22697 0.95713 0.91182 1.01490 1.20529 0.85888 0.94840 1.21531 1.16959 0.82573 0.86459 0.75654 1.90796 1.87126 1.15214 1.51574 1.45306 1.04820 1.10330 1.74256 1.22735 0.82691 0.93757 0.99037 0.86965 1.21922 0.84479 0.99382 0.90812 1.44515 1.07271 1.60843 1.21416 1.19404 0.92939 1.24117 0.99715 0.88805 1.25573 0.97669 1.02218 0.99738 1.70034 1.14884 1.50165 1.24384 0.85104 0.77751 0.77861 0.78727 1.21418 1.22923 1.19046 1.21818 0.92665 0.96316 0.88863 1.23145 0.97421 0.73677 1.02904 0.82805 1.47451 1.34769 1.08978 1.15960 1.23920 1.04398 0.95276 0.94370 1.24051 1.02658 0.95681 0.98776 1.75060 1.16496 1.16277 1.07802 1.78266 1.18684 0.91496 1.20331 1.45286 1.04248 1.09657 1.51632 1.22455 1.03098 0.76971 1.05124 0.87706 0.88029 0.87896 0.80615 0.76106 0.98371 0.90713 0.94555 0.90482 0.92817 0.79680 0.76564 0.89088 0.90417 0.85322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.81 10.17 71.23 0.72 -0.09 16 2 C 0.23 5.56 7.88 138.20 1.09 6.65 16 3 N -0.52 -15.45 11.20 -187.40 -2.10 -17.55 16 4 C 0.04 1.38 11.37 84.10 0.96 2.33 16 5 C -0.11 -3.60 6.91 40.01 0.28 -3.32 16 6 C 0.60 21.79 7.78 86.47 0.67 22.46 16 7 O -0.57 -23.71 14.68 -4.31 -0.06 -23.77 16 8 N -0.70 -23.96 5.15 -439.84 -2.26 -26.23 16 9 C 0.13 4.48 3.25 46.38 0.15 4.63 16 10 H 0.11 4.18 7.62 -2.39 -0.02 4.16 16 11 C 0.16 7.28 5.17 86.85 0.45 7.73 16 12 N -0.61 -26.97 3.39 -692.03 -2.35 -29.32 16 13 C -0.23 -11.54 10.27 84.03 0.86 -10.68 16 14 H 0.09 4.34 7.83 -2.91 -0.02 4.32 16 15 C -0.06 -3.09 5.49 84.86 0.47 -2.63 16 16 N -0.95 -53.99 10.09 21.65 0.22 -53.77 16 17 Si 0.98 43.04 29.55 68.60 2.03 45.07 16 18 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 19 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 20 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 21 C 0.13 4.22 6.27 86.73 0.54 4.76 16 22 C 0.13 3.85 3.97 46.18 0.18 4.04 16 23 H 0.15 3.60 8.14 -2.38 -0.02 3.58 16 24 N -0.28 -8.31 2.38 -321.55 -0.77 -9.07 16 25 C -0.03 -0.84 9.35 83.49 0.78 -0.06 16 26 C -0.05 -1.48 12.05 83.73 1.01 -0.47 16 27 N -0.29 -9.06 12.41 -58.26 -0.72 -9.78 16 28 N -0.11 -3.42 12.30 37.02 0.46 -2.96 16 29 N -0.43 -11.26 3.17 -524.94 -1.67 -12.93 16 30 C 0.06 1.27 10.43 127.77 1.33 2.60 16 31 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.10 1.10 8.14 -2.38 -0.02 1.08 16 33 H 0.10 0.68 6.95 -2.39 -0.02 0.67 16 34 H 0.18 5.16 7.46 -2.91 -0.02 5.14 16 35 H 0.40 13.25 5.76 -92.71 -0.53 12.71 16 36 H 0.00 -0.08 7.59 -2.39 -0.02 -0.10 16 37 H 0.07 4.18 5.87 -2.39 -0.01 4.17 16 38 H 0.24 13.93 8.31 -92.71 -0.77 13.16 16 39 H 0.08 2.27 8.14 -2.38 -0.02 2.25 16 40 H 0.05 1.69 7.16 -2.39 -0.02 1.67 16 41 H 0.19 5.88 7.70 -2.91 -0.02 5.86 16 42 H 0.22 4.25 8.06 -2.91 -0.02 4.23 16 43 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 44 H 0.08 2.02 6.71 -2.39 -0.02 2.00 16 45 H 0.13 1.39 6.86 -2.39 -0.02 1.37 16 Total: -1.00 -71.65 370.59 2.78 -68.87 By element: Atomic # 1 Polarization: 32.98 SS G_CDS: 0.51 Total: 33.49 kcal Atomic # 6 Polarization: 28.46 SS G_CDS: 9.50 Total: 37.96 kcal Atomic # 7 Polarization: -152.41 SS G_CDS: -9.19 Total: -161.61 kcal Atomic # 8 Polarization: -23.71 SS G_CDS: -0.06 Total: -23.77 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Total: -71.65 2.78 -68.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070007911.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 219.529 kcal (2) G-P(sol) polarization free energy of solvation -71.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 147.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 150.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds