Wall clock time and date at job start Wed Apr 1 2020 02:58:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.47238 * 2 1 4 4 N 1.33320 * 126.10176 * 90.02336 * 3 2 1 5 5 C 1.30860 * 109.67908 * 180.02562 * 4 3 2 6 6 N 1.34489 * 109.16617 * 0.02562 * 5 4 3 7 7 H 0.96997 * 126.47182 * 180.02562 * 6 5 4 8 8 C 1.36659 * 126.10770 * 269.72143 * 3 2 1 9 9 C 1.46763 * 126.84556 * 359.96074 * 8 3 2 10 10 O 1.21679 * 120.00277 * 0.02562 * 9 8 3 11 11 N 1.34777 * 120.00029 * 180.02562 * 9 8 3 12 12 C 1.46500 * 120.00052 * 180.02562 * 11 9 8 13 13 H 1.09002 * 110.88793 * 31.11652 * 12 11 9 14 14 C 1.54918 * 111.00384 * 267.19659 * 12 11 9 15 15 N 1.47425 * 104.83098 * 204.91655 * 14 12 11 16 16 C 1.36938 * 125.64645 * 204.17700 * 15 14 12 17 17 H 1.07998 * 119.99576 * 179.97438 * 16 15 14 18 18 C 1.38811 * 119.99991 * 359.94228 * 16 15 14 19 19 N 1.31618 * 120.00270 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99823 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47177 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.46965 * 120.00276 * 20 18 16 23 23 H 1.48496 * 109.47243 * 240.00269 * 20 18 16 24 24 C 1.47025 * 108.70306 * 24.12631 * 15 14 12 25 25 C 1.54318 * 107.27125 * 358.94380 * 24 15 14 26 26 H 1.09003 * 110.72108 * 219.43887 * 25 24 15 27 27 N 1.46504 * 110.72278 * 96.17014 * 25 24 15 28 28 C 1.35314 * 125.86437 * 331.19005 * 27 25 24 29 29 C 1.35348 * 106.17043 * 179.90817 * 28 27 25 30 30 N 1.33768 * 106.50155 * 0.35276 * 29 28 27 31 31 N 1.28641 * 108.88310 * 359.77138 * 30 29 28 32 32 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46832 * 299.99686 * 1 2 3 34 34 H 1.09004 * 109.47261 * 59.99705 * 1 2 3 35 35 H 1.09001 * 109.46832 * 240.00314 * 2 1 3 36 36 H 1.09000 * 109.47611 * 120.00611 * 2 1 3 37 37 H 1.08005 * 125.41470 * 180.02562 * 5 4 3 38 38 H 0.96997 * 120.00229 * 0.02562 * 11 9 8 39 39 H 1.08997 * 110.36213 * 323.75456 * 14 12 11 40 40 H 1.08994 * 110.36313 * 86.07969 * 14 12 11 41 41 H 0.96992 * 120.00115 * 179.97438 * 19 18 16 42 42 H 1.08993 * 109.88283 * 239.52423 * 24 15 14 43 43 H 1.08996 * 109.88017 * 118.35942 * 24 15 14 44 44 H 1.07997 * 126.91256 * 0.02562 * 28 27 25 45 45 H 1.08003 * 126.74711 * 180.12554 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 7 2.2946 2.1613 1.0772 5 6 2.7124 3.3450 0.7072 6 7 2.7325 3.4062 -0.6361 7 1 3.0010 4.1669 -1.1747 8 6 2.3059 2.1783 -1.1041 9 6 2.1696 1.7702 -2.5072 10 8 1.7759 0.6516 -2.7800 11 7 2.4807 2.6343 -3.4936 12 6 2.3442 2.2270 -4.8943 13 1 1.5326 1.5091 -5.0129 14 6 3.6769 1.6546 -5.4385 15 7 3.6100 1.8637 -6.8963 16 6 4.2936 1.1421 -7.8382 17 1 4.1758 1.3740 -8.8864 18 6 5.1386 0.1131 -7.4457 19 7 5.2823 -0.1694 -6.1683 20 14 6.0717 -0.8707 -8.7306 21 1 5.7392 -0.3583 -10.0841 22 1 7.5315 -0.7339 -8.4948 23 1 5.6867 -2.3017 -8.6342 24 6 2.6868 2.9744 -7.1714 25 6 2.1358 3.4591 -5.8139 26 1 1.0772 3.7063 -5.8935 27 7 2.9022 4.6075 -5.3237 28 6 4.2040 4.8635 -5.5895 29 6 4.5011 6.0154 -4.9438 30 7 3.3834 6.3984 -4.3164 31 7 2.4544 5.5430 -4.5616 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 -0.3634 0.5139 -0.8900 35 1 1.8933 -0.5138 -0.8900 36 1 1.8934 -0.5139 0.8899 37 1 2.9960 4.1454 1.3746 38 1 2.7949 3.5258 -3.2763 39 1 4.5230 2.1964 -5.0160 40 1 3.7541 0.5915 -5.2109 41 1 5.8724 -0.8887 -5.8940 42 1 1.8677 2.6281 -7.8017 43 1 3.2203 3.7859 -7.6661 44 1 4.8711 4.2695 -6.1964 45 1 5.4542 6.5233 -4.9338 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070084474.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:55 Heat of formation + Delta-G solvation = 160.048319 kcal Electronic energy + Delta-G solvation = -31319.058852 eV Core-core repulsion = 27183.216174 eV Total energy + Delta-G solvation = -4135.842678 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.23211 -42.27180 -39.46348 -37.84212 -34.69089 -34.07361 -33.46407 -32.11124 -31.78428 -30.83590 -29.50090 -28.66318 -27.62756 -25.13442 -24.07770 -22.98653 -22.61049 -22.48751 -21.43378 -20.38564 -20.24559 -19.64656 -18.82260 -17.71181 -17.17763 -16.48499 -15.83359 -15.58884 -15.48976 -14.96170 -14.81363 -14.74076 -14.16525 -14.10194 -14.02644 -13.83039 -13.52376 -13.36130 -13.05367 -12.81243 -12.52005 -12.28782 -12.02875 -11.63197 -11.46008 -11.39555 -11.11145 -10.94665 -10.89858 -10.83439 -10.59628 -10.42362 -10.24159 -10.08739 -10.06477 -10.00048 -9.74129 -9.24877 -8.92880 -8.90474 -8.50478 -7.21193 -5.90845 -3.37940 1.29406 1.71990 2.39658 2.65280 2.80040 2.81994 3.15777 3.26872 3.32505 3.35660 3.39660 4.23375 4.34806 4.43660 4.57435 4.74569 4.77988 4.94619 4.98037 5.11703 5.25008 5.28122 5.37258 5.41655 5.51718 5.57073 5.63457 5.65356 5.73128 5.75766 5.92998 6.02043 6.09034 6.09867 6.25886 6.28898 6.32829 6.41482 6.57090 6.77276 7.01850 7.10172 7.31945 7.45780 7.58151 7.85775 8.03236 8.25003 8.59224 8.90628 9.51468 10.08043 11.12411 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.009545 B = 0.004232 C = 0.003269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2932.845698 B = 6614.750825 C = 8563.409760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.050 4.050 3 C 0.100 3.900 4 N -0.498 5.498 5 C 0.216 3.784 6 N -0.554 5.554 7 H 0.422 0.578 8 C -0.086 4.086 9 C 0.597 3.403 10 O -0.511 6.511 11 N -0.716 5.716 12 C 0.112 3.888 13 H 0.121 0.879 14 C 0.145 3.855 15 N -0.597 5.597 16 C -0.238 4.238 17 H 0.084 0.916 18 C 0.000 4.000 19 N -0.914 5.914 20 Si 0.919 3.081 21 H -0.278 1.278 22 H -0.289 1.289 23 H -0.288 1.288 24 C 0.129 3.871 25 C 0.115 3.885 26 H 0.121 0.879 27 N -0.276 5.276 28 C -0.016 4.016 29 C -0.068 4.068 30 N -0.278 5.278 31 N -0.106 5.106 32 H 0.059 0.941 33 H 0.050 0.950 34 H 0.055 0.945 35 H 0.097 0.903 36 H 0.074 0.926 37 H 0.214 0.786 38 H 0.389 0.611 39 H 0.020 0.980 40 H 0.124 0.876 41 H 0.257 0.743 42 H 0.057 0.943 43 H 0.042 0.958 44 H 0.195 0.805 45 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.751 8.502 7.788 12.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.088 4.088 3 C -0.034 4.034 4 N -0.218 5.218 5 C -0.068 4.068 6 N -0.159 5.159 7 H 0.260 0.740 8 C -0.202 4.202 9 C 0.383 3.617 10 O -0.385 6.385 11 N -0.367 5.367 12 C 0.005 3.995 13 H 0.139 0.861 14 C 0.019 3.981 15 N -0.325 5.325 16 C -0.366 4.366 17 H 0.102 0.898 18 C -0.197 4.197 19 N -0.560 5.560 20 Si 0.748 3.252 21 H -0.204 1.204 22 H -0.216 1.216 23 H -0.214 1.214 24 C 0.002 3.998 25 C 0.012 3.988 26 H 0.139 0.861 27 N -0.069 5.069 28 C -0.167 4.167 29 C -0.225 4.225 30 N -0.145 5.145 31 N -0.085 5.085 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.115 0.885 36 H 0.093 0.907 37 H 0.231 0.769 38 H 0.223 0.777 39 H 0.038 0.962 40 H 0.141 0.859 41 H 0.068 0.932 42 H 0.075 0.925 43 H 0.060 0.940 44 H 0.212 0.788 45 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -6.238 7.749 9.105 13.486 hybrid contribution 2.018 0.493 -2.244 3.058 sum -4.220 8.242 6.861 11.525 Atomic orbital electron populations 1.21604 0.94476 1.01707 1.01620 1.20076 0.96134 0.88713 1.03903 1.21030 0.98878 0.97003 0.86501 1.70125 1.18618 1.02618 1.30436 1.25108 1.01719 0.97956 0.82038 1.43378 1.50363 1.13235 1.08887 0.73959 1.20998 1.15883 0.88131 0.95181 1.16752 0.77674 0.84885 0.82420 1.90847 1.46043 1.19049 1.82578 1.45674 1.68431 1.16486 1.06138 1.23123 1.04310 0.93837 0.78231 0.86149 1.22415 0.88819 1.04280 0.82595 1.44398 1.50511 1.35122 1.02458 1.19057 1.19182 1.10590 0.87724 0.89845 1.24838 0.99590 0.98846 0.96460 1.69740 1.40639 1.32457 1.13190 0.85957 0.79277 0.79887 0.80046 1.20361 1.21574 1.21428 1.21665 0.94900 0.92553 0.90676 1.23268 0.96098 0.82245 0.97181 0.86091 1.47479 1.09139 1.18124 1.32199 1.23938 0.87167 1.00214 1.05427 1.23568 0.99760 0.97106 1.02107 1.75047 0.98522 1.20247 1.20644 1.78257 1.22343 0.96756 1.11188 0.92196 0.93062 0.92621 0.88491 0.90700 0.76927 0.77653 0.96200 0.85875 0.93234 0.92533 0.94027 0.78789 0.79592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 9.89 37.16 0.37 -1.35 16 2 C -0.05 -0.71 5.94 -27.88 -0.17 -0.87 16 3 C 0.10 1.52 6.40 -82.51 -0.53 0.99 16 4 N -0.50 -6.99 11.20 -10.64 -0.12 -7.11 16 5 C 0.22 2.32 13.01 -90.58 -1.18 1.14 16 6 N -0.55 -6.40 6.07 -10.79 -0.07 -6.46 16 7 H 0.42 4.07 8.32 -40.82 -0.34 3.73 16 8 C -0.09 -1.29 7.08 -82.14 -0.58 -1.88 16 9 C 0.60 10.16 7.79 -12.82 -0.10 10.06 16 10 O -0.51 -10.03 14.45 5.21 0.08 -9.96 16 11 N -0.72 -11.34 5.16 -53.00 -0.27 -11.61 16 12 C 0.11 1.91 3.29 -65.78 -0.22 1.70 16 13 H 0.12 2.16 7.54 -51.93 -0.39 1.77 16 14 C 0.14 3.08 5.17 -2.52 -0.01 3.07 16 15 N -0.60 -12.82 3.39 -170.08 -0.58 -13.40 16 16 C -0.24 -5.81 10.27 -15.06 -0.15 -5.96 16 17 H 0.08 1.96 7.83 -52.49 -0.41 1.55 16 18 C 0.00 -0.01 5.49 -17.43 -0.10 -0.10 16 19 N -0.91 -24.66 10.09 55.49 0.56 -24.10 16 20 Si 0.92 20.43 29.55 -169.99 -5.02 15.41 16 21 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 22 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 24 C 0.13 2.16 6.28 -3.07 -0.02 2.14 16 25 C 0.12 1.70 3.97 -66.10 -0.26 1.44 16 26 H 0.12 1.53 8.14 -51.93 -0.42 1.11 16 27 N -0.28 -4.03 2.39 -52.98 -0.13 -4.16 16 28 C -0.02 -0.23 9.33 -17.05 -0.16 -0.39 16 29 C -0.07 -0.90 12.05 -17.74 -0.21 -1.11 16 30 N -0.28 -4.13 12.41 30.23 0.38 -3.76 16 31 N -0.11 -1.60 12.28 60.35 0.74 -0.86 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.10 1.53 6.46 -51.93 -0.34 1.19 16 36 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.21 1.26 8.06 -52.48 -0.42 0.83 16 38 H 0.39 5.74 6.04 -40.82 -0.25 5.49 16 39 H 0.02 0.46 7.58 -51.93 -0.39 0.06 16 40 H 0.12 3.19 5.87 -51.93 -0.30 2.88 16 41 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 42 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.04 0.68 7.17 -51.93 -0.37 0.31 16 44 H 0.20 2.96 7.71 -52.49 -0.40 2.56 16 45 H 0.19 1.84 8.06 -52.48 -0.42 1.42 16 LS Contribution 372.07 15.07 5.61 5.61 Total: -1.00 -30.34 372.07 -7.86 -38.20 By element: Atomic # 1 Polarization: 19.05 SS G_CDS: -5.72 Total: 13.33 kcal Atomic # 6 Polarization: 12.18 SS G_CDS: -3.32 Total: 8.86 kcal Atomic # 7 Polarization: -71.97 SS G_CDS: 0.51 Total: -71.46 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: 0.08 Total: -9.96 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -30.34 -7.86 -38.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070084474.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 198.251 kcal (2) G-P(sol) polarization free energy of solvation -30.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 167.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 160.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds