Wall clock time and date at job start Wed Apr 1 2020 02:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.47238 * 2 1 4 4 N 1.33320 * 126.10176 * 90.02336 * 3 2 1 5 5 C 1.30860 * 109.67908 * 180.02562 * 4 3 2 6 6 N 1.34489 * 109.16617 * 0.02562 * 5 4 3 7 7 H 0.96997 * 126.47182 * 180.02562 * 6 5 4 8 8 C 1.36659 * 126.10770 * 269.72143 * 3 2 1 9 9 C 1.46763 * 126.84556 * 359.96074 * 8 3 2 10 10 O 1.21679 * 120.00277 * 0.02562 * 9 8 3 11 11 N 1.34777 * 120.00029 * 180.02562 * 9 8 3 12 12 C 1.46500 * 120.00052 * 180.02562 * 11 9 8 13 13 H 1.09002 * 110.88793 * 31.11652 * 12 11 9 14 14 C 1.54918 * 111.00384 * 267.19659 * 12 11 9 15 15 N 1.47425 * 104.83098 * 204.91655 * 14 12 11 16 16 C 1.36938 * 125.64645 * 204.17700 * 15 14 12 17 17 H 1.07998 * 119.99576 * 179.97438 * 16 15 14 18 18 C 1.38811 * 119.99991 * 359.94228 * 16 15 14 19 19 N 1.31618 * 120.00270 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99823 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47177 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.46965 * 120.00276 * 20 18 16 23 23 H 1.48496 * 109.47243 * 240.00269 * 20 18 16 24 24 C 1.47025 * 108.70306 * 24.12631 * 15 14 12 25 25 C 1.54318 * 107.27125 * 358.94380 * 24 15 14 26 26 H 1.09003 * 110.72108 * 219.43887 * 25 24 15 27 27 N 1.46504 * 110.72278 * 96.17014 * 25 24 15 28 28 C 1.35314 * 125.86437 * 331.19005 * 27 25 24 29 29 C 1.35348 * 106.17043 * 179.90817 * 28 27 25 30 30 N 1.33768 * 106.50155 * 0.35276 * 29 28 27 31 31 N 1.28641 * 108.88310 * 359.77138 * 30 29 28 32 32 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46832 * 299.99686 * 1 2 3 34 34 H 1.09004 * 109.47261 * 59.99705 * 1 2 3 35 35 H 1.09001 * 109.46832 * 240.00314 * 2 1 3 36 36 H 1.09000 * 109.47611 * 120.00611 * 2 1 3 37 37 H 1.08005 * 125.41470 * 180.02562 * 5 4 3 38 38 H 0.96997 * 120.00229 * 0.02562 * 11 9 8 39 39 H 1.08997 * 110.36213 * 323.75456 * 14 12 11 40 40 H 1.08994 * 110.36313 * 86.07969 * 14 12 11 41 41 H 0.96992 * 120.00115 * 179.97438 * 19 18 16 42 42 H 1.08993 * 109.88283 * 239.52423 * 24 15 14 43 43 H 1.08996 * 109.88017 * 118.35942 * 24 15 14 44 44 H 1.07997 * 126.91256 * 0.02562 * 28 27 25 45 45 H 1.08003 * 126.74711 * 180.12554 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 7 2.2946 2.1613 1.0772 5 6 2.7124 3.3450 0.7072 6 7 2.7325 3.4062 -0.6361 7 1 3.0010 4.1669 -1.1747 8 6 2.3059 2.1783 -1.1041 9 6 2.1696 1.7702 -2.5072 10 8 1.7759 0.6516 -2.7800 11 7 2.4807 2.6343 -3.4936 12 6 2.3442 2.2270 -4.8943 13 1 1.5326 1.5091 -5.0129 14 6 3.6769 1.6546 -5.4385 15 7 3.6100 1.8637 -6.8963 16 6 4.2936 1.1421 -7.8382 17 1 4.1758 1.3740 -8.8864 18 6 5.1386 0.1131 -7.4457 19 7 5.2823 -0.1694 -6.1683 20 14 6.0717 -0.8707 -8.7306 21 1 5.7392 -0.3583 -10.0841 22 1 7.5315 -0.7339 -8.4948 23 1 5.6867 -2.3017 -8.6342 24 6 2.6868 2.9744 -7.1714 25 6 2.1358 3.4591 -5.8139 26 1 1.0772 3.7063 -5.8935 27 7 2.9022 4.6075 -5.3237 28 6 4.2040 4.8635 -5.5895 29 6 4.5011 6.0154 -4.9438 30 7 3.3834 6.3984 -4.3164 31 7 2.4544 5.5430 -4.5616 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 -0.3634 0.5139 -0.8900 35 1 1.8933 -0.5138 -0.8900 36 1 1.8934 -0.5139 0.8899 37 1 2.9960 4.1454 1.3746 38 1 2.7949 3.5258 -3.2763 39 1 4.5230 2.1964 -5.0160 40 1 3.7541 0.5915 -5.2109 41 1 5.8724 -0.8887 -5.8940 42 1 1.8677 2.6281 -7.8017 43 1 3.2203 3.7859 -7.6661 44 1 4.8711 4.2695 -6.1964 45 1 5.4542 6.5233 -4.9338 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070084474.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:54 Heat of formation + Delta-G solvation = 139.683312 kcal Electronic energy + Delta-G solvation = -31319.941945 eV Core-core repulsion = 27183.216174 eV Total energy + Delta-G solvation = -4136.725771 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.38345 -43.30357 -40.82926 -39.27681 -36.06374 -35.39922 -34.71208 -33.52811 -33.04950 -31.97718 -30.85246 -29.98541 -29.07409 -26.80304 -25.25075 -24.17967 -23.81006 -23.60497 -22.67967 -21.77770 -21.62309 -20.81805 -19.91634 -19.19687 -18.63718 -17.72893 -17.16048 -16.88801 -16.66807 -16.44233 -16.00626 -15.82921 -15.69462 -15.40909 -15.33818 -14.87697 -14.82670 -14.51778 -14.42010 -14.36422 -13.97278 -13.43914 -13.33950 -13.20907 -12.86824 -12.80249 -12.43165 -12.36698 -12.36125 -12.09017 -12.01719 -11.94855 -11.82853 -11.58183 -11.24815 -11.09479 -10.98711 -10.80900 -10.36925 -10.32159 -9.61130 -9.01883 -7.82475 -5.29593 0.17451 0.54993 1.20240 1.48129 1.50036 1.56275 1.58956 1.74398 1.79481 1.95914 2.15381 2.45790 3.12321 3.29593 3.34031 3.42498 3.49638 3.64410 3.68422 3.85833 3.99163 4.12251 4.13234 4.24241 4.27920 4.33981 4.46454 4.52549 4.62449 4.67086 4.71629 4.73225 4.76701 4.97380 5.06964 5.22694 5.23214 5.27550 5.35267 5.46679 5.47951 5.58656 5.69081 6.12535 6.19668 6.26943 6.83347 6.93040 7.00819 7.45300 7.67233 8.24947 9.18624 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.009545 B = 0.004232 C = 0.003269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2932.845698 B = 6614.750825 C = 8563.409760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.052 4.052 3 C 0.093 3.907 4 N -0.526 5.526 5 C 0.243 3.757 6 N -0.546 5.546 7 H 0.432 0.568 8 C -0.113 4.113 9 C 0.593 3.407 10 O -0.546 6.546 11 N -0.706 5.706 12 C 0.123 3.877 13 H 0.112 0.888 14 C 0.160 3.840 15 N -0.613 5.613 16 C -0.234 4.234 17 H 0.094 0.906 18 C -0.058 4.058 19 N -0.945 5.945 20 Si 0.975 3.025 21 H -0.261 1.261 22 H -0.296 1.296 23 H -0.299 1.299 24 C 0.129 3.871 25 C 0.131 3.869 26 H 0.153 0.847 27 N -0.277 5.277 28 C -0.029 4.029 29 C -0.054 4.054 30 N -0.288 5.288 31 N -0.111 5.111 32 H 0.074 0.926 33 H 0.059 0.941 34 H 0.038 0.962 35 H 0.073 0.927 36 H 0.085 0.915 37 H 0.266 0.734 38 H 0.397 0.603 39 H -0.001 1.001 40 H 0.074 0.926 41 H 0.245 0.755 42 H 0.076 0.924 43 H 0.054 0.946 44 H 0.184 0.816 45 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.230 11.151 8.112 14.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.091 4.091 3 C -0.042 4.042 4 N -0.246 5.246 5 C -0.041 4.041 6 N -0.151 5.151 7 H 0.272 0.728 8 C -0.229 4.229 9 C 0.381 3.619 10 O -0.424 6.424 11 N -0.358 5.358 12 C 0.015 3.985 13 H 0.130 0.870 14 C 0.034 3.966 15 N -0.340 5.340 16 C -0.362 4.362 17 H 0.112 0.888 18 C -0.251 4.251 19 N -0.594 5.594 20 Si 0.805 3.195 21 H -0.185 1.185 22 H -0.223 1.223 23 H -0.226 1.226 24 C 0.003 3.997 25 C 0.028 3.972 26 H 0.170 0.830 27 N -0.071 5.071 28 C -0.180 4.180 29 C -0.211 4.211 30 N -0.154 5.154 31 N -0.090 5.090 32 H 0.093 0.907 33 H 0.078 0.922 34 H 0.057 0.943 35 H 0.091 0.909 36 H 0.103 0.897 37 H 0.282 0.718 38 H 0.232 0.768 39 H 0.017 0.983 40 H 0.092 0.908 41 H 0.055 0.945 42 H 0.094 0.906 43 H 0.071 0.929 44 H 0.201 0.799 45 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -6.732 10.472 9.398 15.598 hybrid contribution 2.188 -0.233 -2.282 3.170 sum -4.544 10.240 7.116 13.272 Atomic orbital electron populations 1.21531 0.93337 1.02556 1.01100 1.20066 0.97140 0.88688 1.03157 1.21222 0.98514 0.97362 0.87077 1.70154 1.20298 1.03962 1.30175 1.26164 0.98081 0.97838 0.81980 1.43318 1.49992 1.12413 1.09369 0.72767 1.20677 1.18351 0.89929 0.93961 1.17086 0.76935 0.84427 0.83433 1.90824 1.47724 1.20496 1.83307 1.45525 1.68183 1.16614 1.05439 1.22723 1.01414 0.95014 0.79313 0.87028 1.21928 0.90411 1.01223 0.83084 1.44514 1.51061 1.36342 1.02105 1.19436 1.18120 1.09895 0.88734 0.88836 1.25560 1.01294 1.00450 0.97801 1.70024 1.41602 1.32947 1.14870 0.85052 0.77574 0.77955 0.78963 1.18540 1.22328 1.22606 1.21820 0.94510 0.91295 0.92078 1.23128 0.97633 0.81362 0.95039 0.82952 1.47437 1.09204 1.18006 1.32414 1.23943 0.87085 1.00839 1.06148 1.24053 1.00377 0.96284 1.00346 1.75057 0.98990 1.20315 1.21016 1.78259 1.22594 0.96859 1.11266 0.90734 0.92219 0.94266 0.90882 0.89661 0.71832 0.76776 0.98318 0.90760 0.94488 0.90623 0.92865 0.79867 0.76486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.24 9.89 71.98 0.71 -2.52 16 2 C -0.05 -1.51 5.94 29.85 0.18 -1.33 16 3 C 0.09 2.80 6.40 41.97 0.27 3.07 16 4 N -0.53 -13.85 11.20 -187.59 -2.10 -15.95 16 5 C 0.24 4.49 13.01 180.33 2.35 6.83 16 6 N -0.55 -11.57 6.07 -188.04 -1.14 -12.72 16 7 H 0.43 7.33 8.32 -92.71 -0.77 6.56 16 8 C -0.11 -3.40 7.08 40.01 0.28 -3.11 16 9 C 0.59 20.82 7.79 86.47 0.67 21.50 16 10 O -0.55 -22.71 14.45 -4.28 -0.06 -22.77 16 11 N -0.71 -22.52 5.16 -439.82 -2.27 -24.79 16 12 C 0.12 4.24 3.29 46.39 0.15 4.40 16 13 H 0.11 4.11 7.54 -2.39 -0.02 4.09 16 14 C 0.16 7.07 5.17 86.86 0.45 7.52 16 15 N -0.61 -26.46 3.39 -692.00 -2.35 -28.81 16 16 C -0.23 -11.42 10.27 84.03 0.86 -10.56 16 17 H 0.09 4.30 7.83 -2.91 -0.02 4.28 16 18 C -0.06 -3.01 5.49 84.86 0.47 -2.55 16 19 N -0.95 -53.53 10.09 21.65 0.22 -53.31 16 20 Si 0.98 42.80 29.55 68.60 2.03 44.83 16 21 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 22 H -0.30 -13.19 7.11 99.48 0.71 -12.48 16 23 H -0.30 -13.51 7.11 99.48 0.71 -12.80 16 24 C 0.13 4.10 6.28 86.73 0.54 4.64 16 25 C 0.13 3.66 3.97 46.18 0.18 3.85 16 26 H 0.15 3.40 8.14 -2.39 -0.02 3.38 16 27 N -0.28 -7.58 2.39 -321.55 -0.77 -8.34 16 28 C -0.03 -0.78 9.33 83.49 0.78 0.00 16 29 C -0.05 -1.27 12.05 83.73 1.01 -0.26 16 30 N -0.29 -7.77 12.41 -58.26 -0.72 -8.49 16 31 N -0.11 -3.08 12.28 37.02 0.45 -2.63 16 32 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.04 1.11 8.14 -2.38 -0.02 1.09 16 35 H 0.07 2.46 6.46 -2.39 -0.02 2.45 16 36 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 37 H 0.27 1.77 8.06 -2.91 -0.02 1.75 16 38 H 0.40 11.39 6.04 -92.71 -0.56 10.83 16 39 H 0.00 -0.05 7.58 -2.39 -0.02 -0.07 16 40 H 0.07 4.09 5.87 -2.39 -0.01 4.08 16 41 H 0.25 13.84 8.31 -92.71 -0.77 13.07 16 42 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 43 H 0.05 1.62 7.17 -2.39 -0.02 1.61 16 44 H 0.18 5.48 7.71 -2.91 -0.02 5.46 16 45 H 0.22 3.56 8.06 -2.91 -0.02 3.53 16 Total: -1.00 -69.15 372.07 1.92 -67.23 By element: Atomic # 1 Polarization: 34.57 SS G_CDS: -0.27 Total: 34.30 kcal Atomic # 6 Polarization: 22.55 SS G_CDS: 8.91 Total: 31.46 kcal Atomic # 7 Polarization: -146.36 SS G_CDS: -8.68 Total: -155.04 kcal Atomic # 8 Polarization: -22.71 SS G_CDS: -0.06 Total: -22.77 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Total: -69.15 1.92 -67.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070084474.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 206.912 kcal (2) G-P(sol) polarization free energy of solvation -69.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 139.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds