Wall clock time and date at job start Wed Apr 1 2020 04:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 F 1.39897 * 109.47625 * 2 1 4 4 F 1.39908 * 109.46768 * 239.99859 * 2 1 3 5 5 C 1.50700 * 109.47315 * 120.00548 * 2 1 3 6 6 O 1.21281 * 120.00003 * 22.21479 * 5 2 1 7 7 N 1.34777 * 120.00066 * 202.22484 * 5 2 1 8 8 C 1.46929 * 120.62670 * 355.27495 * 7 5 2 9 9 C 1.53199 * 108.77362 * 233.62973 * 8 7 5 10 10 C 1.53042 * 109.31347 * 305.36951 * 9 8 7 11 11 C 1.53036 * 109.52586 * 61.36863 * 10 9 8 12 12 H 1.08999 * 109.49757 * 58.58266 * 11 10 9 13 13 N 1.46503 * 109.49503 * 178.67726 * 11 10 9 14 14 C 1.45652 * 117.70261 * 239.74072 * 13 11 10 15 15 C 1.53178 * 110.66579 * 157.95571 * 14 13 11 16 16 N 1.47274 * 108.06702 * 47.05489 * 15 14 13 17 17 C 1.36939 * 121.34880 * 118.36325 * 16 15 14 18 18 H 1.07995 * 120.00256 * 336.11933 * 17 16 15 19 19 C 1.38820 * 119.99665 * 156.12747 * 17 16 15 20 20 N 1.31610 * 119.99854 * 347.28598 * 19 17 16 21 21 Si 1.86801 * 119.99920 * 167.29094 * 19 17 16 22 22 H 1.48499 * 109.47005 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47014 * 119.99382 * 21 19 17 24 24 H 1.48498 * 109.47150 * 239.99710 * 21 19 17 25 25 C 1.47043 * 117.29444 * 298.34119 * 16 15 14 26 26 C 1.33376 * 117.70561 * 59.99881 * 13 11 10 27 27 O 1.21277 * 118.49291 * 4.32427 * 26 13 11 28 28 C 1.46926 * 120.63294 * 175.29755 * 7 5 2 29 29 H 1.09002 * 109.47218 * 299.99910 * 1 2 3 30 30 H 1.09000 * 109.47366 * 59.99620 * 1 2 3 31 31 H 1.09003 * 109.47185 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.58378 * 113.84879 * 8 7 5 33 33 H 1.09000 * 109.59005 * 353.41825 * 8 7 5 34 34 H 1.08997 * 109.49702 * 185.41252 * 9 8 7 35 35 H 1.09000 * 109.52077 * 65.33566 * 9 8 7 36 36 H 1.08996 * 109.45518 * 181.38530 * 10 9 8 37 37 H 1.09005 * 109.45868 * 301.35825 * 10 9 8 38 38 H 1.09001 * 109.21197 * 278.44960 * 14 13 11 39 39 H 1.08998 * 109.22338 * 37.78320 * 14 13 11 40 40 H 1.08994 * 109.90887 * 287.34504 * 15 14 13 41 41 H 1.09000 * 109.68704 * 166.63465 * 15 14 13 42 42 H 0.97001 * 119.99907 * 180.02562 * 20 19 17 43 43 H 1.09003 * 109.56425 * 282.91207 * 25 16 15 44 44 H 1.08997 * 109.66481 * 162.61977 * 25 16 15 45 45 H 1.08995 * 109.58806 * 246.15626 * 28 7 5 46 46 H 1.09000 * 109.58359 * 6.43847 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9964 1.3189 0.0000 4 9 1.9962 -0.6596 -1.1424 5 6 2.0323 -0.7105 1.2304 6 8 1.3178 -1.5024 1.8076 7 7 3.2757 -0.4658 1.6894 8 6 4.1894 0.4113 0.9447 9 6 5.5023 -0.3391 0.6992 10 6 6.0583 -0.8368 2.0353 11 6 5.0610 -1.8051 2.6755 12 1 4.8810 -2.6414 1.9999 13 7 5.6077 -2.3055 3.9392 14 6 5.8013 -3.7431 4.0711 15 6 6.8388 -4.0516 5.1550 16 7 6.5114 -3.2456 6.3433 17 6 6.1940 -3.8345 7.5382 18 1 5.8053 -4.8419 7.5574 19 6 6.3719 -3.1365 8.7249 20 7 7.0695 -2.0206 8.7336 21 14 5.6212 -3.7812 10.3093 22 1 4.8898 -5.0436 10.0326 23 1 6.6985 -4.0394 11.2982 24 1 4.6782 -2.7730 10.8563 25 6 6.5395 -1.7830 6.1948 26 6 5.8882 -1.4133 4.8900 27 8 5.6048 -0.2505 4.6940 28 6 3.7433 -1.0714 2.9438 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 4.3865 1.3118 1.5263 33 1 3.7390 0.6817 -0.0104 34 1 6.2232 0.3322 0.2326 35 1 5.3186 -1.1892 0.0422 36 1 7.0050 -1.3498 1.8661 37 1 6.2187 0.0116 2.7006 38 1 4.8524 -4.2101 4.3348 39 1 6.1473 -4.1474 3.1199 40 1 7.8359 -3.7931 4.7987 41 1 6.8019 -5.1112 5.4077 42 1 7.1942 -1.5330 9.5629 43 1 7.5727 -1.4355 6.1985 44 1 5.9958 -1.3201 7.0183 45 1 3.9039 -0.2917 3.6883 46 1 2.9973 -1.7772 3.3090 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071252236.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:19 Heat of formation + Delta-G solvation = -120.274629 kcal Electronic energy + Delta-G solvation = -32445.684676 eV Core-core repulsion = 27814.704346 eV Total energy + Delta-G solvation = -4630.980331 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.66519 -47.56242 -40.70900 -39.57770 -37.37065 -36.04602 -34.65252 -32.69682 -31.94077 -31.63772 -29.93380 -28.86535 -26.66981 -26.27877 -24.18414 -23.65958 -23.19297 -21.97768 -20.91821 -19.87141 -18.32887 -18.12528 -18.06832 -17.22386 -16.85981 -16.39583 -16.02292 -15.61024 -15.24327 -15.05367 -14.67616 -14.65731 -14.36890 -14.13896 -13.87644 -13.78649 -13.78208 -13.52108 -13.37746 -13.22859 -12.98686 -12.89487 -12.81535 -12.51647 -12.40253 -12.27975 -11.77243 -11.54192 -11.43208 -11.08949 -10.99134 -10.91652 -10.73402 -10.64884 -10.47812 -10.23859 -10.11942 -10.00492 -9.14970 -8.81928 -8.69993 -8.17517 -6.96618 -5.93932 -3.37927 1.91022 2.29586 3.25475 3.31235 3.33038 3.39519 3.41147 3.50324 3.57132 4.00176 4.19560 4.36119 4.66839 4.78061 4.80762 4.92344 5.03871 5.15738 5.18697 5.25464 5.27044 5.34228 5.39730 5.50557 5.56354 5.60535 5.65694 5.75903 5.81294 5.84908 5.99205 6.02371 6.11471 6.17350 6.34529 6.41609 6.56568 6.83837 6.97799 7.03872 7.22837 7.55401 7.63444 8.05169 8.16435 8.76036 9.03114 9.61499 10.14932 11.15773 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.019317 B = 0.002881 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.119449 B = 9715.618564 C =10172.401147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.282 3.718 3 F -0.184 7.184 4 F -0.183 7.183 5 C 0.483 3.517 6 O -0.507 6.507 7 N -0.584 5.584 8 C 0.089 3.911 9 C -0.128 4.128 10 C -0.138 4.138 11 C 0.134 3.866 12 H 0.081 0.919 13 N -0.596 5.596 14 C 0.100 3.900 15 C 0.130 3.870 16 N -0.595 5.595 17 C -0.256 4.256 18 H 0.075 0.925 19 C 0.003 3.997 20 N -0.908 5.908 21 Si 0.910 3.090 22 H -0.277 1.277 23 H -0.289 1.289 24 H -0.287 1.287 25 C 0.166 3.834 26 C 0.504 3.496 27 O -0.569 6.569 28 C 0.090 3.910 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.101 0.899 32 H 0.082 0.918 33 H 0.095 0.905 34 H 0.081 0.919 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.094 0.906 38 H 0.059 0.941 39 H 0.062 0.938 40 H 0.033 0.967 41 H 0.076 0.924 42 H 0.258 0.742 43 H 0.063 0.937 44 H 0.120 0.880 45 H 0.110 0.890 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.757 3.407 -19.691 21.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.242 3.758 3 F -0.165 7.165 4 F -0.164 7.164 5 C 0.265 3.735 6 O -0.382 6.382 7 N -0.316 5.316 8 C -0.033 4.033 9 C -0.167 4.167 10 C -0.176 4.176 11 C 0.028 3.972 12 H 0.099 0.901 13 N -0.329 5.329 14 C -0.025 4.025 15 C 0.003 3.997 16 N -0.320 5.320 17 C -0.385 4.385 18 H 0.093 0.907 19 C -0.195 4.195 20 N -0.553 5.553 21 Si 0.740 3.260 22 H -0.202 1.202 23 H -0.215 1.215 24 H -0.214 1.214 25 C 0.038 3.962 26 C 0.295 3.705 27 O -0.449 6.449 28 C -0.032 4.032 29 H 0.113 0.887 30 H 0.108 0.892 31 H 0.120 0.880 32 H 0.100 0.900 33 H 0.113 0.887 34 H 0.100 0.900 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.112 0.888 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.051 0.949 41 H 0.095 0.905 42 H 0.068 0.932 43 H 0.080 0.920 44 H 0.137 0.863 45 H 0.128 0.872 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -7.188 3.656 -19.264 20.884 hybrid contribution -0.089 -0.287 0.608 0.678 sum -7.276 3.368 -18.656 20.306 Atomic orbital electron populations 1.22618 0.88701 1.06830 1.05692 1.21379 0.95889 0.75593 0.82936 1.93000 1.89778 1.37097 1.96656 1.93084 1.90512 1.80783 1.52026 1.20715 0.82978 0.83798 0.86012 1.90779 1.55728 1.34050 1.57662 1.48165 1.12253 1.46757 1.24424 1.22286 0.90378 0.93218 0.97389 1.21884 0.96344 1.00564 0.97911 1.21986 0.98145 1.01169 0.96343 1.21287 0.92770 0.96538 0.86562 0.90126 1.47425 1.63811 1.07731 1.13959 1.22125 1.01013 0.79448 0.99904 1.21285 0.94212 0.96894 0.87350 1.44185 1.80161 1.00328 1.07310 1.19237 1.36657 1.00011 0.82605 0.90736 1.25077 0.98403 0.98029 0.98038 1.69921 1.40780 1.17753 1.26799 0.86097 0.78570 0.78287 0.83050 1.20167 1.21538 1.21396 1.21056 0.99284 0.85392 0.90461 1.22208 0.76961 0.84723 0.86592 1.90492 1.54493 1.19551 1.80389 1.22430 0.95712 1.00173 0.84897 0.88699 0.89156 0.88038 0.90015 0.88673 0.90024 0.91623 0.91550 0.88800 0.92299 0.91993 0.94933 0.90538 0.93173 0.91993 0.86257 0.87186 0.89145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.46 8.88 37.16 0.33 -1.13 16 2 C 0.28 2.98 1.80 -27.88 -0.05 2.93 16 3 F -0.18 -1.90 14.05 2.25 0.03 -1.87 16 4 F -0.18 -1.98 16.78 2.25 0.04 -1.94 16 5 C 0.48 6.56 7.15 -10.99 -0.08 6.48 16 6 O -0.51 -8.21 15.47 5.56 0.09 -8.13 16 7 N -0.58 -7.90 2.97 -172.76 -0.51 -8.42 16 8 C 0.09 0.99 5.61 -3.71 -0.02 0.97 16 9 C -0.13 -1.33 6.08 -26.61 -0.16 -1.49 16 10 C -0.14 -1.84 5.03 -26.69 -0.13 -1.97 16 11 C 0.13 1.98 2.61 -67.81 -0.18 1.80 16 12 H 0.08 1.10 7.73 -51.93 -0.40 0.69 16 13 N -0.60 -10.31 2.79 -167.04 -0.47 -10.77 16 14 C 0.10 1.58 6.46 -4.41 -0.03 1.55 16 15 C 0.13 2.38 6.61 -3.53 -0.02 2.36 16 16 N -0.60 -13.96 3.02 -173.58 -0.52 -14.48 16 17 C -0.26 -6.61 9.72 -15.06 -0.15 -6.76 16 18 H 0.07 1.86 7.86 -52.49 -0.41 1.45 16 19 C 0.00 0.08 5.08 -17.43 -0.09 -0.01 16 20 N -0.91 -25.29 10.90 55.49 0.60 -24.69 16 21 Si 0.91 21.04 29.57 -169.99 -5.03 16.01 16 22 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 23 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 25 C 0.17 3.92 5.13 -5.02 -0.03 3.89 16 26 C 0.50 10.43 6.98 -11.73 -0.08 10.35 16 27 O -0.57 -12.32 12.46 5.56 0.07 -12.25 16 28 C 0.09 1.42 5.66 -3.71 -0.02 1.40 16 29 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.10 0.83 7.88 -51.93 -0.41 0.42 16 32 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.10 0.94 4.84 -51.93 -0.25 0.69 16 34 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.09 1.49 6.11 -51.93 -0.32 1.17 16 38 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.06 0.78 7.94 -51.93 -0.41 0.37 16 40 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.08 1.31 7.96 -51.93 -0.41 0.90 16 42 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 43 H 0.06 1.54 8.14 -51.93 -0.42 1.12 16 44 H 0.12 3.21 6.33 -51.93 -0.33 2.88 16 45 H 0.11 2.02 5.65 -51.93 -0.29 1.73 16 46 H 0.09 1.57 7.00 -51.93 -0.36 1.20 16 LS Contribution 363.04 15.07 5.47 5.47 Total: -1.00 -29.90 363.04 -7.48 -37.38 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -6.54 Total: 3.31 kcal Atomic # 6 Polarization: 21.08 SS G_CDS: -0.71 Total: 20.37 kcal Atomic # 7 Polarization: -57.46 SS G_CDS: -0.90 Total: -58.36 kcal Atomic # 8 Polarization: -20.53 SS G_CDS: 0.16 Total: -20.38 kcal Atomic # 9 Polarization: -3.88 SS G_CDS: 0.07 Total: -3.81 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.03 Total: 16.01 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -29.90 -7.48 -37.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071252236.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.896 kcal (2) G-P(sol) polarization free energy of solvation -29.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds