Wall clock time and date at job start Wed Apr 1 2020 04:31:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 F 1.39904 * 109.46924 * 2 1 4 4 F 1.39901 * 109.47390 * 240.00661 * 2 1 3 5 5 C 1.50700 * 109.47581 * 119.99857 * 2 1 3 6 6 O 1.21280 * 119.99445 * 18.60825 * 5 2 1 7 7 N 1.34775 * 120.00393 * 198.60730 * 5 2 1 8 8 C 1.46926 * 120.63190 * 183.64189 * 7 5 2 9 9 C 1.53187 * 108.77365 * 126.39054 * 8 7 5 10 10 C 1.53039 * 109.31627 * 54.63922 * 9 8 7 11 11 C 1.53043 * 109.53455 * 298.63085 * 10 9 8 12 12 H 1.09004 * 109.49905 * 301.38126 * 11 10 9 13 13 N 1.46495 * 109.50218 * 181.31866 * 11 10 9 14 14 C 1.45650 * 117.70758 * 120.06180 * 13 11 10 15 15 C 1.52991 * 110.77054 * 158.10434 * 14 13 11 16 16 N 1.47262 * 108.19013 * 46.72474 * 15 14 13 17 17 C 1.36939 * 121.35313 * 118.47228 * 16 15 14 18 18 H 1.08007 * 119.99767 * 332.31402 * 17 16 15 19 19 C 1.38808 * 120.00179 * 152.58661 * 17 16 15 20 20 N 1.31626 * 120.00145 * 162.23195 * 19 17 16 21 21 Si 1.86802 * 120.00073 * 342.23840 * 19 17 16 22 22 H 1.48493 * 109.47374 * 90.66503 * 21 19 17 23 23 H 1.48501 * 109.47080 * 210.66925 * 21 19 17 24 24 H 1.48501 * 109.46848 * 330.66685 * 21 19 17 25 25 C 1.47050 * 117.29566 * 298.74563 * 16 15 14 26 26 C 1.33387 * 117.70293 * 300.04683 * 13 11 10 27 27 O 1.21286 * 118.48649 * 4.31284 * 26 13 11 28 28 C 1.46934 * 120.60107 * 3.61851 * 7 5 2 29 29 H 1.09004 * 109.47180 * 299.99347 * 1 2 3 30 30 H 1.08994 * 109.47328 * 59.99715 * 1 2 3 31 31 H 1.09001 * 109.46299 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.58755 * 6.59809 * 8 7 5 33 33 H 1.09001 * 109.69846 * 246.24426 * 8 7 5 34 34 H 1.08996 * 109.50169 * 294.67759 * 9 8 7 35 35 H 1.09010 * 109.49213 * 174.58462 * 9 8 7 36 36 H 1.08996 * 109.46076 * 178.61624 * 10 9 8 37 37 H 1.08994 * 109.46756 * 58.64908 * 10 9 8 38 38 H 1.08996 * 109.21268 * 37.76982 * 14 13 11 39 39 H 1.09001 * 109.18229 * 278.41117 * 14 13 11 40 40 H 1.09000 * 109.71636 * 287.05083 * 15 14 13 41 41 H 1.09003 * 109.75298 * 166.42447 * 15 14 13 42 42 H 0.96995 * 119.99830 * 180.02562 * 20 19 17 43 43 H 1.09002 * 109.56698 * 162.30549 * 25 16 15 44 44 H 1.08990 * 109.56757 * 282.66740 * 25 16 15 45 45 H 1.09003 * 109.56118 * 113.80940 * 28 7 5 46 46 H 1.08993 * 109.62087 * 353.37866 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9964 -0.6594 -1.1423 5 6 2.0324 -0.7104 1.2304 6 8 1.2961 -1.4524 1.8453 7 7 3.3000 -0.5211 1.6475 8 6 3.8288 -1.2667 2.7978 9 6 5.1256 -1.9659 2.3782 10 6 6.0944 -0.9315 1.8007 11 6 5.4723 -0.2836 0.5615 12 1 5.2484 -1.0528 -0.1777 13 7 6.4129 0.6837 -0.0090 14 6 6.8601 0.4669 -1.3781 15 6 7.3664 1.7714 -1.9965 16 7 8.2628 2.4226 -1.0263 17 6 9.5804 2.6549 -1.3181 18 1 10.1000 2.0146 -2.0157 19 6 10.2498 3.7097 -0.7130 20 7 11.5657 3.7364 -0.7055 21 14 9.2830 5.0912 0.0909 22 1 9.0481 4.7645 1.5203 23 1 10.0533 6.3569 -0.0076 24 1 7.9788 5.2504 -0.6012 25 6 7.6870 2.8076 0.2708 26 6 6.7996 1.7014 0.7617 27 8 6.4196 1.7320 1.9131 28 6 4.1790 0.4345 0.9597 29 1 -0.3634 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3632 -1.0277 -0.0005 32 1 3.0993 -2.0108 3.1176 33 1 4.0333 -0.5793 3.6186 34 1 4.9046 -2.7194 1.6223 35 1 5.5788 -2.4435 3.2470 36 1 7.0273 -1.4225 1.5240 37 1 6.2957 -0.1649 2.5488 38 1 6.0281 0.0878 -1.9714 39 1 7.6658 -0.2673 -1.3797 40 1 6.5230 2.4264 -2.2151 41 1 7.9125 1.5562 -2.9150 42 1 12.0334 4.4733 -0.2824 43 1 8.4884 2.9786 0.9896 44 1 7.0990 3.7178 0.1535 45 1 4.4122 1.2628 1.6288 46 1 3.6811 0.8125 0.0668 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071252237.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:21 Heat of formation + Delta-G solvation = -112.852171 kcal Electronic energy + Delta-G solvation = -33011.517711 eV Core-core repulsion = 28380.859242 eV Total energy + Delta-G solvation = -4630.658469 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.70470 -47.59523 -40.87363 -39.85620 -37.50950 -36.33881 -34.77386 -32.98096 -32.03391 -31.77136 -30.29747 -29.29118 -26.69946 -26.50322 -24.40442 -24.14032 -23.20727 -21.76623 -21.06901 -19.93654 -18.70602 -18.23503 -18.17797 -17.41065 -17.00242 -16.60597 -16.17406 -15.75465 -15.48903 -15.14642 -14.95435 -14.83383 -14.57093 -14.35630 -14.27052 -13.89788 -13.77945 -13.70437 -13.39968 -13.09958 -13.03784 -12.90738 -12.84826 -12.80747 -12.56011 -12.39992 -12.20887 -11.86325 -11.65827 -11.32277 -11.22084 -11.03168 -10.93278 -10.61300 -10.52402 -10.32137 -10.11740 -9.69181 -9.39110 -9.06957 -8.76179 -8.36809 -7.22071 -6.09446 -3.52215 1.78202 2.20952 2.98171 3.05616 3.26163 3.37129 3.38059 3.42630 3.54216 3.97695 4.15567 4.38529 4.56404 4.62452 4.70393 4.79997 4.82973 5.01513 5.09478 5.12599 5.15141 5.18462 5.29338 5.35486 5.43248 5.45726 5.57132 5.63937 5.67473 5.70594 5.77436 5.84707 5.97450 6.04380 6.07842 6.16190 6.27349 6.35047 6.46455 6.74146 6.84403 7.41442 7.63014 7.78441 8.15749 8.47501 8.71796 9.51625 9.84360 11.05697 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.017742 B = 0.003475 C = 0.003290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.827822 B = 8056.216742 C = 8508.117772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.280 3.720 3 F -0.180 7.180 4 F -0.181 7.181 5 C 0.487 3.513 6 O -0.512 6.512 7 N -0.582 5.582 8 C 0.108 3.892 9 C -0.128 4.128 10 C -0.143 4.143 11 C 0.133 3.867 12 H 0.085 0.915 13 N -0.592 5.592 14 C 0.098 3.902 15 C 0.131 3.869 16 N -0.603 5.603 17 C -0.268 4.268 18 H 0.092 0.908 19 C 0.030 3.970 20 N -0.902 5.902 21 Si 0.877 3.123 22 H -0.282 1.282 23 H -0.297 1.297 24 H -0.269 1.269 25 C 0.109 3.891 26 C 0.516 3.484 27 O -0.562 6.562 28 C 0.063 3.937 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.100 0.900 32 H 0.094 0.906 33 H 0.078 0.922 34 H 0.065 0.935 35 H 0.082 0.918 36 H 0.068 0.932 37 H 0.100 0.900 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.037 0.963 41 H 0.087 0.913 42 H 0.266 0.734 43 H 0.106 0.894 44 H 0.064 0.936 45 H 0.104 0.896 46 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.539 -10.027 1.076 21.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.240 3.760 3 F -0.161 7.161 4 F -0.162 7.162 5 C 0.269 3.731 6 O -0.387 6.387 7 N -0.314 5.314 8 C -0.013 4.013 9 C -0.166 4.166 10 C -0.181 4.181 11 C 0.028 3.972 12 H 0.103 0.897 13 N -0.325 5.325 14 C -0.027 4.027 15 C 0.005 3.995 16 N -0.329 5.329 17 C -0.395 4.395 18 H 0.110 0.890 19 C -0.170 4.170 20 N -0.544 5.544 21 Si 0.707 3.293 22 H -0.209 1.209 23 H -0.225 1.225 24 H -0.194 1.194 25 C -0.019 4.019 26 C 0.306 3.694 27 O -0.442 6.442 28 C -0.060 4.060 29 H 0.113 0.887 30 H 0.110 0.890 31 H 0.119 0.881 32 H 0.112 0.888 33 H 0.096 0.904 34 H 0.083 0.917 35 H 0.100 0.900 36 H 0.086 0.914 37 H 0.118 0.882 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.055 0.945 41 H 0.105 0.895 42 H 0.076 0.924 43 H 0.124 0.876 44 H 0.081 0.919 45 H 0.122 0.878 46 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -19.853 -10.260 1.980 22.435 hybrid contribution -0.078 0.921 0.180 0.942 sum -19.931 -9.339 2.159 22.116 Atomic orbital electron populations 1.22616 0.88631 1.06715 1.05790 1.21388 0.95908 0.75703 0.82982 1.92973 1.89313 1.37116 1.96663 1.93095 1.90513 1.80721 1.51849 1.20713 0.82910 0.83356 0.86103 1.90749 1.55069 1.37277 1.55631 1.48121 1.10882 1.41056 1.31344 1.21797 0.96060 0.96128 0.87319 1.21878 0.94986 0.98077 1.01696 1.22078 0.98180 0.99121 0.98715 1.21344 0.88697 0.90977 0.96210 0.89657 1.47308 1.44929 1.25493 1.14723 1.22122 0.98831 1.00875 0.80858 1.21325 0.93827 0.91023 0.93352 1.44432 1.08164 1.70842 1.09431 1.18863 0.83094 1.10396 1.27188 0.89017 1.25287 0.95325 0.97643 0.98794 1.69788 1.06300 1.32577 1.45756 0.87079 0.79965 0.82973 0.79332 1.20886 1.22493 1.19400 1.21621 0.96452 0.93749 0.90103 1.21229 0.80081 0.82935 0.85181 1.90542 1.57665 1.77792 1.18155 1.22968 0.90541 0.92412 1.00032 0.88719 0.89042 0.88115 0.88790 0.90387 0.91667 0.89986 0.91377 0.88162 0.91369 0.91683 0.94453 0.89462 0.92406 0.87634 0.91919 0.87791 0.87774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.39 8.83 37.16 0.33 -1.06 16 2 C 0.28 2.99 1.83 -27.88 -0.05 2.94 16 3 F -0.18 -2.09 13.85 2.25 0.03 -2.06 16 4 F -0.18 -2.03 16.95 2.25 0.04 -1.99 16 5 C 0.49 6.02 7.19 -10.99 -0.08 5.94 16 6 O -0.51 -7.09 15.45 5.56 0.09 -7.00 16 7 N -0.58 -7.19 2.97 -172.77 -0.51 -7.70 16 8 C 0.11 1.20 6.42 -3.71 -0.02 1.17 16 9 C -0.13 -1.32 6.08 -26.61 -0.16 -1.48 16 10 C -0.14 -1.88 5.03 -26.69 -0.13 -2.02 16 11 C 0.13 1.79 2.61 -67.81 -0.18 1.61 16 12 H 0.09 1.03 7.73 -51.93 -0.40 0.63 16 13 N -0.59 -9.38 2.79 -167.31 -0.47 -9.85 16 14 C 0.10 1.39 6.45 -4.50 -0.03 1.37 16 15 C 0.13 2.21 6.61 -3.63 -0.02 2.19 16 16 N -0.60 -13.26 2.79 -173.91 -0.48 -13.74 16 17 C -0.27 -6.98 10.12 -15.06 -0.15 -7.14 16 18 H 0.09 2.53 8.06 -52.48 -0.42 2.10 16 19 C 0.03 0.82 5.29 -17.43 -0.09 0.73 16 20 N -0.90 -26.57 13.97 55.49 0.78 -25.79 16 21 Si 0.88 21.36 24.20 -169.99 -4.11 17.25 16 22 H -0.28 -6.78 6.65 56.52 0.38 -6.40 16 23 H -0.30 -7.37 7.11 56.52 0.40 -6.97 16 24 H -0.27 -6.32 6.37 56.52 0.36 -5.96 16 25 C 0.11 2.34 4.27 -5.20 -0.02 2.32 16 26 C 0.52 9.87 6.95 -11.91 -0.08 9.78 16 27 O -0.56 -11.28 12.49 5.55 0.07 -11.21 16 28 C 0.06 0.85 5.05 -3.70 -0.02 0.83 16 29 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.10 0.75 7.91 -51.93 -0.41 0.34 16 32 H 0.09 1.01 7.03 -51.93 -0.36 0.64 16 33 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.08 0.72 8.14 -51.92 -0.42 0.30 16 36 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.10 1.59 5.80 -51.93 -0.30 1.28 16 38 H 0.07 0.77 7.94 -51.93 -0.41 0.35 16 39 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 40 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.09 1.39 7.96 -51.93 -0.41 0.98 16 42 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 43 H 0.11 2.51 5.38 -51.93 -0.28 2.23 16 44 H 0.06 1.35 6.17 -51.93 -0.32 1.03 16 45 H 0.10 1.64 5.97 -51.93 -0.31 1.33 16 46 H 0.10 1.37 4.58 -51.93 -0.24 1.13 16 LS Contribution 356.28 15.07 5.37 5.37 Total: -1.00 -30.80 356.28 -6.39 -37.18 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -6.46 Total: 2.37 kcal Atomic # 6 Polarization: 17.89 SS G_CDS: -0.72 Total: 17.17 kcal Atomic # 7 Polarization: -56.40 SS G_CDS: -0.69 Total: -57.09 kcal Atomic # 8 Polarization: -18.37 SS G_CDS: 0.16 Total: -18.21 kcal Atomic # 9 Polarization: -4.11 SS G_CDS: 0.07 Total: -4.05 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.11 Total: 17.25 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.80 -6.39 -37.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071252237.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.669 kcal (2) G-P(sol) polarization free energy of solvation -30.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds