Wall clock time and date at job start Wed Apr 1 2020 04:31:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 F 1.39904 * 109.46924 * 2 1 4 4 F 1.39901 * 109.47390 * 240.00661 * 2 1 3 5 5 C 1.50700 * 109.47581 * 119.99857 * 2 1 3 6 6 O 1.21280 * 119.99445 * 18.60825 * 5 2 1 7 7 N 1.34775 * 120.00393 * 198.60730 * 5 2 1 8 8 C 1.46926 * 120.63190 * 183.64189 * 7 5 2 9 9 C 1.53187 * 108.77365 * 126.39054 * 8 7 5 10 10 C 1.53039 * 109.31627 * 54.63922 * 9 8 7 11 11 C 1.53043 * 109.53455 * 298.63085 * 10 9 8 12 12 H 1.09004 * 109.49905 * 301.38126 * 11 10 9 13 13 N 1.46495 * 109.50218 * 181.31866 * 11 10 9 14 14 C 1.45650 * 117.70758 * 120.06180 * 13 11 10 15 15 C 1.52991 * 110.77054 * 158.10434 * 14 13 11 16 16 N 1.47262 * 108.19013 * 46.72474 * 15 14 13 17 17 C 1.36939 * 121.35313 * 118.47228 * 16 15 14 18 18 H 1.08007 * 119.99767 * 332.31402 * 17 16 15 19 19 C 1.38808 * 120.00179 * 152.58661 * 17 16 15 20 20 N 1.31626 * 120.00145 * 162.23195 * 19 17 16 21 21 Si 1.86802 * 120.00073 * 342.23840 * 19 17 16 22 22 H 1.48493 * 109.47374 * 90.66503 * 21 19 17 23 23 H 1.48501 * 109.47080 * 210.66925 * 21 19 17 24 24 H 1.48501 * 109.46848 * 330.66685 * 21 19 17 25 25 C 1.47050 * 117.29566 * 298.74563 * 16 15 14 26 26 C 1.33387 * 117.70293 * 300.04683 * 13 11 10 27 27 O 1.21286 * 118.48649 * 4.31284 * 26 13 11 28 28 C 1.46934 * 120.60107 * 3.61851 * 7 5 2 29 29 H 1.09004 * 109.47180 * 299.99347 * 1 2 3 30 30 H 1.08994 * 109.47328 * 59.99715 * 1 2 3 31 31 H 1.09001 * 109.46299 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.58755 * 6.59809 * 8 7 5 33 33 H 1.09001 * 109.69846 * 246.24426 * 8 7 5 34 34 H 1.08996 * 109.50169 * 294.67759 * 9 8 7 35 35 H 1.09010 * 109.49213 * 174.58462 * 9 8 7 36 36 H 1.08996 * 109.46076 * 178.61624 * 10 9 8 37 37 H 1.08994 * 109.46756 * 58.64908 * 10 9 8 38 38 H 1.08996 * 109.21268 * 37.76982 * 14 13 11 39 39 H 1.09001 * 109.18229 * 278.41117 * 14 13 11 40 40 H 1.09000 * 109.71636 * 287.05083 * 15 14 13 41 41 H 1.09003 * 109.75298 * 166.42447 * 15 14 13 42 42 H 0.96995 * 119.99830 * 180.02562 * 20 19 17 43 43 H 1.09002 * 109.56698 * 162.30549 * 25 16 15 44 44 H 1.08990 * 109.56757 * 282.66740 * 25 16 15 45 45 H 1.09003 * 109.56118 * 113.80940 * 28 7 5 46 46 H 1.08993 * 109.62087 * 353.37866 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9964 -0.6594 -1.1423 5 6 2.0324 -0.7104 1.2304 6 8 1.2961 -1.4524 1.8453 7 7 3.3000 -0.5211 1.6475 8 6 3.8288 -1.2667 2.7978 9 6 5.1256 -1.9659 2.3782 10 6 6.0944 -0.9315 1.8007 11 6 5.4723 -0.2836 0.5615 12 1 5.2484 -1.0528 -0.1777 13 7 6.4129 0.6837 -0.0090 14 6 6.8601 0.4669 -1.3781 15 6 7.3664 1.7714 -1.9965 16 7 8.2628 2.4226 -1.0263 17 6 9.5804 2.6549 -1.3181 18 1 10.1000 2.0146 -2.0157 19 6 10.2498 3.7097 -0.7130 20 7 11.5657 3.7364 -0.7055 21 14 9.2830 5.0912 0.0909 22 1 9.0481 4.7645 1.5203 23 1 10.0533 6.3569 -0.0076 24 1 7.9788 5.2504 -0.6012 25 6 7.6870 2.8076 0.2708 26 6 6.7996 1.7014 0.7617 27 8 6.4196 1.7320 1.9131 28 6 4.1790 0.4345 0.9597 29 1 -0.3634 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3632 -1.0277 -0.0005 32 1 3.0993 -2.0108 3.1176 33 1 4.0333 -0.5793 3.6186 34 1 4.9046 -2.7194 1.6223 35 1 5.5788 -2.4435 3.2470 36 1 7.0273 -1.4225 1.5240 37 1 6.2957 -0.1649 2.5488 38 1 6.0281 0.0878 -1.9714 39 1 7.6658 -0.2673 -1.3797 40 1 6.5230 2.4264 -2.2151 41 1 7.9125 1.5562 -2.9150 42 1 12.0334 4.4733 -0.2824 43 1 8.4884 2.9786 0.9896 44 1 7.0990 3.7178 0.1535 45 1 4.4122 1.2628 1.6288 46 1 3.6811 0.8125 0.0668 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071252237.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:21 Heat of formation + Delta-G solvation = -132.974275 kcal Electronic energy + Delta-G solvation = -33012.390271 eV Core-core repulsion = 28380.859242 eV Total energy + Delta-G solvation = -4631.531029 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.54854 -48.43842 -42.09260 -40.98513 -38.63976 -37.89288 -36.18641 -34.15169 -33.64309 -32.58265 -31.59962 -30.72187 -28.30594 -27.48190 -25.67069 -25.32026 -24.42548 -23.11256 -22.17196 -20.88415 -20.27917 -19.23091 -19.03318 -18.67854 -18.31970 -18.04043 -17.33992 -16.94944 -16.81877 -16.51353 -16.10746 -16.07780 -15.91122 -15.54161 -15.29777 -14.95058 -14.78236 -14.70426 -14.64023 -14.58120 -14.45893 -14.13419 -13.92031 -13.75817 -13.50816 -13.38151 -13.19598 -13.07638 -13.02837 -12.82271 -12.62400 -12.36798 -12.21772 -11.99728 -11.92185 -11.74542 -11.65435 -11.08855 -11.01893 -10.60588 -10.16881 -9.59580 -9.06405 -8.21057 -5.58747 0.83674 1.27505 1.30947 1.38135 1.43166 1.51325 1.89718 2.36602 2.42697 2.74310 2.90961 3.18945 3.22985 3.37639 3.48244 3.59841 3.82638 3.88210 3.91179 4.07433 4.13066 4.26221 4.31829 4.38652 4.42548 4.45432 4.48152 4.54436 4.56602 4.65786 4.70200 4.76800 4.84497 4.91949 4.93004 5.03125 5.09718 5.18369 5.27443 5.56306 5.75528 5.87033 6.08546 6.37526 6.46359 6.72555 7.07156 7.49469 7.89093 8.97850 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.017742 B = 0.003475 C = 0.003290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.827822 B = 8056.216742 C = 8508.117772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.279 3.721 3 F -0.186 7.186 4 F -0.182 7.182 5 C 0.484 3.516 6 O -0.527 6.527 7 N -0.584 5.584 8 C 0.106 3.894 9 C -0.116 4.116 10 C -0.140 4.140 11 C 0.132 3.868 12 H 0.112 0.888 13 N -0.586 5.586 14 C 0.100 3.900 15 C 0.125 3.875 16 N -0.616 5.616 17 C -0.246 4.246 18 H 0.070 0.930 19 C -0.026 4.026 20 N -0.951 5.951 21 Si 0.931 3.069 22 H -0.283 1.283 23 H -0.305 1.305 24 H -0.253 1.253 25 C 0.106 3.894 26 C 0.517 3.483 27 O -0.576 6.576 28 C 0.073 3.927 29 H 0.099 0.901 30 H 0.111 0.889 31 H 0.104 0.896 32 H 0.100 0.900 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.099 0.901 36 H 0.064 0.936 37 H 0.071 0.929 38 H 0.113 0.887 39 H 0.066 0.934 40 H 0.055 0.945 41 H 0.096 0.904 42 H 0.263 0.737 43 H 0.077 0.923 44 H 0.066 0.934 45 H 0.079 0.921 46 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.363 -11.465 0.290 25.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.239 3.761 3 F -0.167 7.167 4 F -0.163 7.163 5 C 0.268 3.732 6 O -0.404 6.404 7 N -0.316 5.316 8 C -0.016 4.016 9 C -0.155 4.155 10 C -0.178 4.178 11 C 0.028 3.972 12 H 0.129 0.871 13 N -0.317 5.317 14 C -0.023 4.023 15 C 0.000 4.000 16 N -0.342 5.342 17 C -0.376 4.376 18 H 0.088 0.912 19 C -0.222 4.222 20 N -0.597 5.597 21 Si 0.759 3.241 22 H -0.210 1.210 23 H -0.234 1.234 24 H -0.178 1.178 25 C -0.022 4.022 26 C 0.305 3.695 27 O -0.457 6.457 28 C -0.050 4.050 29 H 0.117 0.883 30 H 0.130 0.870 31 H 0.123 0.877 32 H 0.118 0.882 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.117 0.883 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.131 0.869 39 H 0.084 0.916 40 H 0.073 0.927 41 H 0.114 0.886 42 H 0.072 0.928 43 H 0.095 0.905 44 H 0.083 0.917 45 H 0.097 0.903 46 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -22.740 -11.736 1.168 25.616 hybrid contribution 0.761 1.253 0.399 1.520 sum -21.979 -10.483 1.566 24.401 Atomic orbital electron populations 1.22682 0.86294 1.07398 1.07079 1.21548 0.97413 0.75064 0.82061 1.92960 1.89536 1.37532 1.96640 1.93090 1.90711 1.80744 1.51788 1.21038 0.82572 0.83117 0.86500 1.90742 1.55322 1.38028 1.56333 1.48181 1.10942 1.40892 1.31545 1.21882 0.96535 0.96142 0.86999 1.21815 0.93794 0.97278 1.02592 1.21990 0.98875 0.98984 0.97940 1.21540 0.88014 0.90740 0.96936 0.87052 1.47279 1.44541 1.24785 1.15084 1.22166 1.00601 0.99241 0.80279 1.21606 0.93500 0.92039 0.92817 1.44519 1.07593 1.71273 1.10854 1.18846 0.84864 1.08856 1.24984 0.91204 1.25845 0.95862 0.99979 1.00528 1.69907 1.07862 1.33456 1.48450 0.86205 0.79210 0.80039 0.78613 1.20989 1.23364 1.17751 1.21485 0.96094 0.95210 0.89381 1.20636 0.80198 0.83434 0.85262 1.90557 1.58189 1.78257 1.18697 1.22750 0.90705 0.91892 0.99657 0.88257 0.87010 0.87719 0.88180 0.90815 0.90456 0.88275 0.91719 0.91051 0.86861 0.91602 0.92682 0.88586 0.92786 0.90506 0.91719 0.90325 0.87200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.26 8.83 71.98 0.64 -1.62 16 2 C 0.28 5.23 1.83 29.85 0.05 5.29 16 3 F -0.19 -3.87 13.85 44.97 0.62 -3.25 16 4 F -0.18 -3.52 16.95 44.97 0.76 -2.75 16 5 C 0.48 10.90 7.19 87.66 0.63 11.53 16 6 O -0.53 -13.52 15.45 -3.03 -0.05 -13.57 16 7 N -0.58 -13.20 2.97 -818.90 -2.43 -15.64 16 8 C 0.11 2.13 6.42 86.36 0.55 2.68 16 9 C -0.12 -2.11 6.08 30.67 0.19 -1.92 16 10 C -0.14 -3.43 5.03 30.62 0.15 -3.27 16 11 C 0.13 3.19 2.61 45.07 0.12 3.30 16 12 H 0.11 2.19 7.73 -2.39 -0.02 2.17 16 13 N -0.59 -17.15 2.79 -802.40 -2.24 -19.39 16 14 C 0.10 2.51 6.45 86.54 0.56 3.07 16 15 C 0.12 3.89 6.61 86.23 0.57 4.46 16 16 N -0.62 -26.51 2.79 -704.14 -1.96 -28.47 16 17 C -0.25 -12.96 10.12 84.03 0.85 -12.11 16 18 H 0.07 3.92 8.06 -2.91 -0.02 3.90 16 19 C -0.03 -1.48 5.29 84.86 0.45 -1.03 16 20 N -0.95 -57.82 13.97 21.65 0.30 -57.52 16 21 Si 0.93 44.99 24.20 68.60 1.66 46.65 16 22 H -0.28 -13.56 6.65 99.48 0.66 -12.90 16 23 H -0.31 -15.01 7.11 99.48 0.71 -14.30 16 24 H -0.25 -11.42 6.37 99.48 0.63 -10.78 16 25 C 0.11 4.52 4.27 85.33 0.36 4.88 16 26 C 0.52 19.23 6.95 87.68 0.61 19.84 16 27 O -0.58 -22.99 12.49 -3.05 -0.04 -23.03 16 28 C 0.07 1.81 5.05 86.36 0.44 2.24 16 29 H 0.10 1.18 8.14 -2.38 -0.02 1.16 16 30 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.10 1.27 7.91 -2.39 -0.02 1.25 16 32 H 0.10 1.93 7.03 -2.39 -0.02 1.91 16 33 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.10 1.49 8.14 -2.38 -0.02 1.47 16 36 H 0.06 1.62 8.14 -2.39 -0.02 1.61 16 37 H 0.07 2.22 5.80 -2.39 -0.01 2.20 16 38 H 0.11 1.93 7.94 -2.39 -0.02 1.91 16 39 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.10 2.82 7.96 -2.39 -0.02 2.80 16 42 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 43 H 0.08 3.71 5.38 -2.39 -0.01 3.70 16 44 H 0.07 2.71 6.17 -2.39 -0.01 2.70 16 45 H 0.08 2.40 5.97 -2.39 -0.01 2.39 16 46 H 0.11 2.60 4.58 -2.39 -0.01 2.59 16 Total: -1.00 -68.07 356.28 3.69 -64.38 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: 0.89 Total: 15.27 kcal Atomic # 6 Polarization: 31.16 SS G_CDS: 6.17 Total: 37.33 kcal Atomic # 7 Polarization: -114.69 SS G_CDS: -6.33 Total: -121.02 kcal Atomic # 8 Polarization: -36.52 SS G_CDS: -0.08 Total: -36.60 kcal Atomic # 9 Polarization: -7.39 SS G_CDS: 1.39 Total: -6.00 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 1.66 Total: 46.65 kcal Total: -68.07 3.69 -64.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071252237.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.595 kcal (2) G-P(sol) polarization free energy of solvation -68.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds