Wall clock time and date at job start Wed Apr 1 2020 02:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 C 1.35355 * 126.38656 * 85.00087 * 3 2 1 5 5 C 1.41504 * 105.50623 * 179.97438 * 4 3 2 6 6 C 1.47705 * 126.52164 * 179.97438 * 5 4 3 7 7 O 1.21573 * 119.99987 * 0.02562 * 6 5 4 8 8 N 1.34776 * 120.00376 * 180.02562 * 6 5 4 9 9 C 1.46497 * 120.00252 * 180.02562 * 8 6 5 10 10 C 1.50709 * 109.46986 * 179.97438 * 9 8 6 11 11 C 1.35350 * 126.74850 * 94.70944 * 10 9 8 12 12 N 1.35310 * 106.17046 * 179.84900 * 11 10 9 13 13 C 1.46508 * 125.86683 * 180.18513 * 12 11 10 14 14 C 1.53938 * 113.74169 * 14.04037 * 13 12 11 15 15 N 1.47807 * 86.03604 * 222.08123 * 14 13 12 16 16 C 1.36945 * 134.46004 * 204.64024 * 15 14 13 17 17 H 1.08003 * 120.00130 * 179.87314 * 16 15 14 18 18 C 1.38816 * 119.99552 * 359.87287 * 16 15 14 19 19 N 1.31620 * 119.99965 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 119.99735 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47366 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47377 * 119.99807 * 20 18 16 23 23 H 1.48501 * 109.47189 * 239.99724 * 20 18 16 24 24 C 1.47577 * 91.05204 * 24.54954 * 15 14 13 25 25 N 1.28714 * 108.26827 * 0.42141 * 12 11 10 26 26 N 1.28641 * 110.17504 * 359.73079 * 25 12 11 27 27 N 1.31805 * 106.95993 * 0.02562 * 5 4 3 28 28 N 1.28466 * 110.07421 * 359.71458 * 27 5 4 29 29 H 0.97005 * 124.88702 * 180.30676 * 28 27 5 30 30 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 32 32 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 33 33 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 34 34 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 35 35 H 1.08007 * 127.25352 * 359.97438 * 4 3 2 36 36 H 0.97005 * 119.99896 * 0.02562 * 8 6 5 37 37 H 1.09004 * 109.46967 * 299.99706 * 9 8 6 38 38 H 1.08992 * 109.47792 * 59.99962 * 9 8 6 39 39 H 1.07994 * 126.91805 * 0.02562 * 11 10 9 40 40 H 1.08999 * 112.94279 * 145.63611 * 13 12 11 41 41 H 1.08999 * 113.76917 * 336.34874 * 14 13 12 42 42 H 1.09001 * 113.76901 * 107.74860 * 14 13 12 43 43 H 0.97001 * 119.99399 * 179.97438 * 19 18 16 44 44 H 1.09002 * 113.77617 * 221.15116 * 24 15 14 45 45 H 1.09002 * 113.87199 * 89.76404 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2104 2.2096 1.0855 5 6 2.6931 3.4412 0.5831 6 6 3.0422 4.6377 1.3758 7 8 2.9237 4.6211 2.5857 8 7 3.4921 5.7478 0.7580 9 6 3.8388 6.9342 1.5443 10 6 4.3118 8.0278 0.6215 11 6 3.5635 9.0283 0.1011 12 7 4.4014 9.7684 -0.6611 13 6 4.0372 10.9656 -1.4230 14 6 2.6669 11.5520 -1.0382 15 7 2.4546 11.7399 -2.4888 16 6 1.6810 12.5804 -3.2441 17 1 1.7079 12.5165 -4.3219 18 6 0.8624 13.5146 -2.6243 19 7 0.8294 13.5921 -1.3108 20 14 -0.1923 14.6615 -3.6545 21 1 0.0247 14.3735 -5.0950 22 1 -1.6238 14.4530 -3.3188 23 1 0.1831 16.0696 -3.3687 24 6 3.4124 10.6601 -2.7964 25 7 5.5725 9.2371 -0.6059 26 7 5.5526 8.1971 0.1510 27 7 2.7708 3.3182 -0.7269 28 7 2.3939 2.1426 -1.0824 29 1 2.3704 1.8205 -1.9971 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 2.0235 1.9530 2.1179 36 1 3.5863 5.7611 -0.2074 37 1 2.9611 7.2757 2.0930 38 1 4.6328 6.6845 2.2480 39 1 2.5102 9.2028 0.2639 40 1 4.8366 11.7056 -1.4595 41 1 1.9903 10.8272 -0.5854 42 1 2.7299 12.4849 -0.4778 43 1 0.2576 14.2452 -0.8778 44 1 4.0697 10.8820 -3.6372 45 1 2.9570 9.6719 -2.8618 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094275020.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:13 Heat of formation + Delta-G solvation = 190.408047 kcal Electronic energy + Delta-G solvation = -28522.580383 eV Core-core repulsion = 24388.054202 eV Total energy + Delta-G solvation = -4134.526181 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.05050 -42.97859 -39.37932 -38.34889 -35.22342 -34.74348 -33.39275 -32.30748 -31.91693 -31.13424 -29.68973 -27.97128 -27.03324 -25.28476 -24.41043 -24.24051 -23.71943 -21.91209 -21.39171 -21.04235 -20.17384 -19.60625 -18.02037 -17.60454 -17.12630 -16.60079 -16.28294 -16.10561 -15.52679 -15.12696 -15.07334 -14.88712 -14.59281 -14.42394 -14.07731 -13.95846 -13.61510 -13.35720 -13.07674 -12.90972 -12.84235 -12.20680 -12.11501 -12.08482 -11.83090 -11.69038 -11.36715 -11.18156 -11.09258 -10.98729 -10.93215 -10.51379 -10.34635 -10.20445 -9.89487 -9.69926 -9.54107 -9.29118 -9.12089 -9.10016 -9.04167 -7.25810 -6.05071 -3.40324 1.34933 1.80217 1.84097 2.40326 2.57860 2.66644 3.25622 3.30543 3.31476 3.33863 3.36294 4.14383 4.21750 4.22006 4.38606 4.45478 4.73427 4.74303 4.74774 4.92326 4.98589 5.06236 5.17730 5.20543 5.22531 5.34885 5.37589 5.41609 5.54664 5.62443 5.65229 5.69859 5.78041 6.06345 6.07891 6.12315 6.18286 6.28827 6.32434 6.55265 6.63886 6.80197 7.04740 7.16727 7.33795 7.63102 7.67451 8.10755 8.74937 8.76937 9.41500 10.19223 11.12271 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.012322 B = 0.002031 C = 0.001858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2271.863629 B =13783.051655 C =15063.708815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.054 4.054 3 C 0.014 3.986 4 C -0.174 4.174 5 C -0.009 4.009 6 C 0.605 3.395 7 O -0.534 6.534 8 N -0.709 5.709 9 C 0.215 3.785 10 C -0.062 4.062 11 C -0.014 4.014 12 N -0.265 5.265 13 C 0.077 3.923 14 C 0.163 3.837 15 N -0.599 5.599 16 C -0.231 4.231 17 H 0.088 0.912 18 C -0.002 4.002 19 N -0.919 5.919 20 Si 0.919 3.081 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.287 1.287 24 C 0.120 3.880 25 N -0.089 5.089 26 N -0.266 5.266 27 N -0.256 5.256 28 N -0.379 5.379 29 H 0.444 0.556 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.055 0.945 33 H 0.092 0.908 34 H 0.075 0.925 35 H 0.163 0.837 36 H 0.409 0.591 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.191 0.809 40 H 0.132 0.868 41 H 0.042 0.958 42 H 0.092 0.908 43 H 0.258 0.742 44 H 0.062 0.938 45 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.285 -24.429 2.580 24.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.093 4.093 3 C -0.111 4.111 4 C -0.202 4.202 5 C -0.170 4.170 6 C 0.389 3.611 7 O -0.408 6.408 8 N -0.361 5.361 9 C 0.090 3.910 10 C -0.201 4.201 11 C -0.167 4.167 12 N -0.058 5.058 13 C -0.025 4.025 14 C 0.037 3.963 15 N -0.325 5.325 16 C -0.358 4.358 17 H 0.105 0.895 18 C -0.199 4.199 19 N -0.565 5.565 20 Si 0.749 3.251 21 H -0.202 1.202 22 H -0.214 1.214 23 H -0.214 1.214 24 C -0.008 4.008 25 N -0.068 5.068 26 N -0.133 5.133 27 N -0.092 5.092 28 N -0.093 5.093 29 H 0.289 0.711 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.111 0.889 34 H 0.094 0.906 35 H 0.180 0.820 36 H 0.244 0.756 37 H 0.107 0.893 38 H 0.105 0.895 39 H 0.208 0.792 40 H 0.150 0.850 41 H 0.059 0.941 42 H 0.110 0.890 43 H 0.069 0.931 44 H 0.080 0.920 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 2.755 -23.371 1.986 23.617 hybrid contribution -1.992 0.138 -0.583 2.080 sum 0.763 -23.233 1.404 23.288 Atomic orbital electron populations 1.21792 0.93901 1.02339 1.02802 1.20127 0.96533 0.88593 1.04042 1.21468 1.05339 0.96990 0.87326 1.21498 1.06648 0.92228 0.99840 1.21908 1.08309 0.96882 0.89863 1.16819 0.76955 0.81000 0.86279 1.90804 1.54100 1.82894 1.13050 1.45895 1.66016 1.12552 1.11675 1.19331 1.00657 0.80459 0.90526 1.21697 0.91457 1.00621 1.06366 1.23505 0.99944 0.94826 0.98461 1.47898 1.06339 1.20910 1.30618 1.25270 1.00895 0.82731 0.93556 1.22746 0.85824 0.99005 0.88748 1.45681 1.49260 1.35899 1.01709 1.19051 1.17422 1.09663 0.89685 0.89454 1.24858 0.99641 0.99451 0.95989 1.69774 1.41962 1.37561 1.07155 0.85943 0.79797 0.80283 0.79087 1.20228 1.21444 1.21372 1.22932 0.91113 0.93313 0.93405 1.78269 1.04966 1.05946 1.17633 1.75019 1.19327 1.10275 1.08638 1.73585 1.17996 1.02478 1.15107 1.43319 1.47487 1.08532 1.09991 0.71128 0.91683 0.91764 0.92630 0.88948 0.90619 0.81966 0.75566 0.89313 0.89460 0.79187 0.85032 0.94060 0.89012 0.93146 0.91989 0.93938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.60 9.89 37.16 0.37 -0.23 16 2 C -0.05 -0.21 6.49 -27.88 -0.18 -0.39 16 3 C 0.01 0.11 6.48 -82.21 -0.53 -0.43 16 4 C -0.17 -1.73 10.73 -39.37 -0.42 -2.16 16 5 C -0.01 -0.10 7.13 -82.77 -0.59 -0.69 16 6 C 0.61 8.28 7.82 -12.39 -0.10 8.18 16 7 O -0.53 -8.55 16.93 5.30 0.09 -8.46 16 8 N -0.71 -9.01 5.55 -62.47 -0.35 -9.35 16 9 C 0.21 2.73 6.23 -5.19 -0.03 2.70 16 10 C -0.06 -0.92 6.61 -82.77 -0.55 -1.47 16 11 C -0.01 -0.20 10.72 -17.05 -0.18 -0.39 16 12 N -0.27 -4.42 3.54 -56.31 -0.20 -4.62 16 13 C 0.08 1.35 5.14 -70.16 -0.36 0.99 16 14 C 0.16 3.38 6.90 -2.85 -0.02 3.36 16 15 N -0.60 -13.91 3.70 -177.93 -0.66 -14.57 16 16 C -0.23 -5.98 10.70 -15.05 -0.16 -6.15 16 17 H 0.09 2.18 7.83 -52.48 -0.41 1.77 16 18 C 0.00 -0.05 5.50 -17.43 -0.10 -0.15 16 19 N -0.92 -25.19 11.39 55.49 0.63 -24.56 16 20 Si 0.92 20.79 29.55 -169.99 -5.02 15.76 16 21 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 22 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 24 C 0.12 2.24 8.74 -2.97 -0.03 2.22 16 25 N -0.09 -1.59 13.17 60.35 0.79 -0.79 16 26 N -0.27 -4.57 12.41 33.29 0.41 -4.16 16 27 N -0.26 -2.79 11.92 33.42 0.40 -2.39 16 28 N -0.38 -2.87 6.83 33.50 0.23 -2.64 16 29 H 0.44 1.81 8.96 -190.44 -1.71 0.10 16 30 H 0.06 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.08 0.18 8.14 -51.93 -0.42 -0.25 16 35 H 0.16 1.46 8.06 -52.48 -0.42 1.04 16 36 H 0.41 5.08 8.19 -40.82 -0.33 4.74 16 37 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.19 2.52 6.73 -52.49 -0.35 2.17 16 40 H 0.13 2.22 8.14 -51.93 -0.42 1.80 16 41 H 0.04 0.84 6.31 -51.93 -0.33 0.51 16 42 H 0.09 2.11 7.17 -51.93 -0.37 1.73 16 43 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 44 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 388.38 15.07 5.85 5.85 Total: -1.00 -32.68 388.38 -7.99 -40.67 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -7.29 Total: 3.85 kcal Atomic # 6 Polarization: 8.28 SS G_CDS: -2.88 Total: 5.40 kcal Atomic # 7 Polarization: -64.34 SS G_CDS: 1.26 Total: -63.08 kcal Atomic # 8 Polarization: -8.55 SS G_CDS: 0.09 Total: -8.46 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.68 -7.99 -40.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094275020.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 231.075 kcal (2) G-P(sol) polarization free energy of solvation -32.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 198.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 190.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds