Wall clock time and date at job start Wed Apr 1 2020 02:58:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50697 * 109.47152 * 2 1 4 4 N 1.30446 * 125.99006 * 270.01720 * 3 2 1 5 5 N 1.39935 * 108.90003 * 179.72464 * 4 3 2 6 6 H 0.96998 * 125.75472 * 180.27595 * 5 4 3 7 7 C 1.34258 * 108.49136 * 0.43452 * 5 4 3 8 8 C 1.38054 * 107.41520 * 359.57809 * 7 5 4 9 9 C 1.47421 * 126.41174 * 180.26178 * 8 7 5 10 10 O 1.21602 * 119.99937 * 179.97438 * 9 8 7 11 11 N 1.34779 * 120.00515 * 359.97438 * 9 8 7 12 12 C 1.46501 * 120.00176 * 179.97438 * 11 9 8 13 13 C 1.50702 * 109.46753 * 179.97438 * 12 11 9 14 14 C 1.35349 * 126.75014 * 94.71890 * 13 12 11 15 15 N 1.35312 * 106.17591 * 179.84808 * 14 13 12 16 16 C 1.46493 * 125.87238 * 180.18171 * 15 14 13 17 17 C 1.53955 * 113.73996 * 14.03987 * 16 15 14 18 18 N 1.47809 * 86.03670 * 222.08333 * 17 16 15 19 19 C 1.36932 * 134.45772 * 204.64711 * 18 17 16 20 20 H 1.08000 * 120.00035 * 179.86381 * 19 18 17 21 21 C 1.38816 * 120.00168 * 359.86059 * 19 18 17 22 22 N 1.31620 * 119.99596 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 120.00225 * 180.02562 * 21 19 18 24 24 H 1.48491 * 109.47364 * 90.00053 * 23 21 19 25 25 H 1.48504 * 109.47053 * 210.00069 * 23 21 19 26 26 H 1.48503 * 109.47281 * 329.99529 * 23 21 19 27 27 C 1.47586 * 91.05179 * 24.54670 * 18 17 16 28 28 N 1.28723 * 108.26140 * 0.41567 * 15 14 13 29 29 N 1.28631 * 110.17884 * 359.73370 * 28 15 14 30 30 H 1.08998 * 109.47436 * 300.00556 * 1 2 3 31 31 H 1.09003 * 109.46561 * 60.00454 * 1 2 3 32 32 H 1.09004 * 109.47140 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47436 * 239.99444 * 2 1 3 34 34 H 1.09007 * 109.47001 * 119.99709 * 2 1 3 35 35 H 1.08002 * 126.29527 * 179.84921 * 7 5 4 36 36 H 0.97000 * 119.99526 * 359.97438 * 11 9 8 37 37 H 1.08991 * 109.46974 * 300.00073 * 12 11 9 38 38 H 1.09000 * 109.47030 * 60.00136 * 12 11 9 39 39 H 1.08003 * 126.91235 * 359.97438 * 14 13 12 40 40 H 1.08997 * 112.94637 * 145.62491 * 16 15 14 41 41 H 1.09001 * 113.76708 * 336.34662 * 17 16 15 42 42 H 1.09001 * 113.77118 * 107.74446 * 17 16 15 43 43 H 0.96996 * 119.99928 * 179.97438 * 22 21 19 44 44 H 1.09005 * 113.76920 * 221.15474 * 27 18 17 45 45 H 1.08993 * 113.87315 * 89.76970 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2875 2.1436 -1.0555 5 7 2.7275 3.4067 -0.6442 6 1 2.9802 4.1374 -1.2301 7 6 2.7443 3.4357 0.6979 8 6 2.3090 2.2035 1.1433 9 6 2.1609 1.7833 2.5485 10 8 1.7649 0.6636 2.8098 11 7 2.4644 2.6400 3.5438 12 6 2.3166 2.2225 4.9402 13 6 2.7187 3.3558 5.8485 14 6 1.8981 4.2754 6.4080 15 7 2.6902 5.0898 7.1430 16 6 2.2414 6.2368 7.9361 17 6 0.7190 6.2766 8.1617 18 7 0.8209 7.7271 7.8962 19 6 0.0714 8.8201 8.2406 20 1 0.3697 9.8047 7.9120 21 6 -1.0719 8.6627 9.0119 22 7 -1.4353 7.4628 9.4127 23 14 -2.0948 10.1536 9.4811 24 1 -3.1289 10.3913 8.4423 25 1 -2.7541 9.9098 10.7892 26 1 -1.2145 11.3451 9.5850 27 6 2.0556 7.5247 7.1135 28 7 3.9066 4.6866 7.0215 29 7 3.9575 3.6542 6.2559 30 1 -0.3634 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8901 32 1 -0.3634 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 3.0394 4.2709 1.3157 36 1 2.7806 3.5330 3.3354 37 1 1.2776 1.9544 5.1312 38 1 2.9554 1.3601 5.1312 39 1 0.8265 4.3439 6.2928 40 1 2.8237 6.3778 8.8466 41 1 0.1490 5.7313 7.4095 42 1 0.4195 6.0355 9.1817 43 1 -2.2339 7.3527 9.9519 44 1 2.8214 8.2782 7.2981 45 1 1.8811 7.3469 6.0524 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094302080.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:03 Heat of formation + Delta-G solvation = 189.317028 kcal Electronic energy + Delta-G solvation = -28918.381495 eV Core-core repulsion = 24783.808004 eV Total energy + Delta-G solvation = -4134.573491 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.10526 -41.72020 -39.19024 -38.39607 -35.34179 -34.33372 -33.43722 -32.08894 -31.59606 -30.56655 -30.34800 -28.00621 -26.73943 -25.31493 -24.43246 -24.24365 -23.26571 -21.97151 -21.20691 -20.55502 -19.80536 -19.64416 -18.80152 -17.44511 -16.92550 -16.51145 -16.23979 -15.64778 -15.50826 -15.15702 -14.97202 -14.86231 -14.54778 -14.24645 -14.10219 -13.98625 -13.50453 -13.15879 -13.01456 -12.90426 -12.53271 -12.23941 -12.15085 -11.87929 -11.68917 -11.43853 -11.38764 -11.21979 -11.01136 -10.99686 -10.98025 -10.56261 -10.27196 -10.04859 -9.92623 -9.84941 -9.59622 -9.28044 -9.14272 -9.08300 -8.98274 -7.30308 -6.08646 -3.44244 1.19453 1.78190 1.90308 2.32712 2.45616 2.60561 3.23395 3.28766 3.30747 3.31929 3.40545 4.16595 4.18415 4.30406 4.34597 4.67971 4.69822 4.80228 4.88594 5.00486 5.09162 5.12941 5.16723 5.24246 5.29767 5.37041 5.43697 5.51147 5.62189 5.74900 5.80392 5.95786 6.00373 6.06200 6.07184 6.13158 6.21957 6.26346 6.31267 6.49754 6.74090 6.75693 6.98954 7.12366 7.19752 7.45785 7.63645 8.18302 8.70184 8.71680 9.37802 10.14919 11.08560 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.013355 B = 0.002111 C = 0.002003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2096.039942 B =13260.878009 C =13976.768997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.049 4.049 3 C 0.140 3.860 4 N -0.300 5.300 5 N -0.461 5.461 6 H 0.444 0.556 7 C 0.107 3.893 8 C -0.285 4.285 9 C 0.595 3.405 10 O -0.539 6.539 11 N -0.722 5.722 12 C 0.218 3.782 13 C -0.063 4.063 14 C -0.015 4.015 15 N -0.265 5.265 16 C 0.077 3.923 17 C 0.164 3.836 18 N -0.599 5.599 19 C -0.233 4.233 20 H 0.087 0.913 21 C -0.001 4.001 22 N -0.919 5.919 23 Si 0.920 3.080 24 H -0.286 1.286 25 H -0.287 1.287 26 H -0.278 1.278 27 C 0.120 3.880 28 N -0.089 5.089 29 N -0.267 5.267 30 H 0.060 0.940 31 H 0.051 0.949 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.102 0.898 35 H 0.186 0.814 36 H 0.398 0.602 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.191 0.809 40 H 0.132 0.868 41 H 0.042 0.958 42 H 0.092 0.908 43 H 0.259 0.741 44 H 0.062 0.938 45 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.808 -9.197 -15.979 19.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.089 4.089 3 C -0.029 4.029 4 N -0.122 5.122 5 N -0.165 5.165 6 H 0.289 0.711 7 C -0.046 4.046 8 C -0.300 4.300 9 C 0.383 3.617 10 O -0.417 6.417 11 N -0.374 5.374 12 C 0.093 3.907 13 C -0.202 4.202 14 C -0.169 4.169 15 N -0.058 5.058 16 C -0.025 4.025 17 C 0.037 3.963 18 N -0.325 5.325 19 C -0.360 4.360 20 H 0.105 0.895 21 C -0.198 4.198 22 N -0.564 5.564 23 Si 0.749 3.251 24 H -0.213 1.213 25 H -0.213 1.213 26 H -0.203 1.203 27 C -0.007 4.007 28 N -0.068 5.068 29 N -0.134 5.134 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.093 0.907 34 H 0.121 0.879 35 H 0.203 0.797 36 H 0.232 0.768 37 H 0.105 0.895 38 H 0.103 0.897 39 H 0.208 0.792 40 H 0.150 0.850 41 H 0.059 0.941 42 H 0.110 0.890 43 H 0.069 0.931 44 H 0.080 0.920 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 7.735 -9.514 -16.423 20.496 hybrid contribution -1.427 1.875 0.545 2.418 sum 6.308 -7.639 -15.878 18.716 Atomic orbital electron populations 1.21622 0.93874 1.02159 1.02059 1.20141 0.96597 0.87941 1.04184 1.22500 0.94746 0.97025 0.88597 1.77180 1.22040 0.90496 1.22476 1.46118 1.51721 1.13213 1.05479 0.71118 1.23205 0.96858 0.98831 0.85750 1.20285 1.19543 0.95575 0.94592 1.17164 0.76801 0.84427 0.83332 1.90752 1.46855 1.19928 1.84169 1.45866 1.68713 1.17131 1.05705 1.19266 1.01883 0.92489 0.77092 1.21753 0.90577 1.01536 1.06291 1.23520 1.00485 0.93913 0.98953 1.47914 1.05189 1.21795 1.30869 1.25283 1.00345 0.81752 0.95092 1.22751 0.85397 0.85840 1.02324 1.45672 1.26447 1.02552 1.57856 1.18992 1.03898 0.85131 1.27987 0.89509 1.24857 0.97930 0.97287 0.99762 1.69757 1.26429 1.20432 1.39804 0.86015 0.80045 0.81222 0.77842 1.21272 1.21324 1.20336 1.22924 0.90692 0.92283 0.94821 1.78280 1.02452 1.09183 1.16932 1.75027 1.20958 1.07773 1.09616 0.92039 0.93022 0.91832 0.90657 0.87935 0.79729 0.76804 0.89516 0.89657 0.79218 0.85039 0.94071 0.89014 0.93053 0.92002 0.94035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 9.89 37.16 0.37 -0.90 16 2 C -0.05 -0.49 5.97 -27.89 -0.17 -0.65 16 3 C 0.14 1.53 6.52 -82.02 -0.53 0.99 16 4 N -0.30 -3.16 12.63 33.89 0.43 -2.73 16 5 N -0.46 -3.33 7.29 30.85 0.22 -3.11 16 6 H 0.44 1.65 8.96 -182.72 -1.64 0.01 16 7 C 0.11 0.77 11.52 -16.56 -0.19 0.58 16 8 C -0.28 -2.95 6.13 -105.07 -0.64 -3.59 16 9 C 0.60 7.00 7.81 -12.52 -0.10 6.90 16 10 O -0.54 -7.76 14.92 5.28 0.08 -7.68 16 11 N -0.72 -7.43 5.54 -62.57 -0.35 -7.78 16 12 C 0.22 2.46 6.23 -5.19 -0.03 2.43 16 13 C -0.06 -0.83 6.62 -82.77 -0.55 -1.38 16 14 C -0.01 -0.21 10.72 -17.05 -0.18 -0.39 16 15 N -0.27 -4.13 3.54 -56.30 -0.20 -4.33 16 16 C 0.08 1.28 5.14 -70.14 -0.36 0.92 16 17 C 0.16 3.26 6.90 -2.84 -0.02 3.24 16 18 N -0.60 -13.47 3.70 -177.86 -0.66 -14.13 16 19 C -0.23 -5.89 10.70 -15.06 -0.16 -6.05 16 20 H 0.09 2.11 7.83 -52.49 -0.41 1.70 16 21 C 0.00 -0.02 5.50 -17.43 -0.10 -0.11 16 22 N -0.92 -24.73 11.39 55.49 0.63 -24.10 16 23 Si 0.92 20.40 29.55 -169.99 -5.02 15.37 16 24 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 25 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 26 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 27 C 0.12 2.13 8.74 -2.97 -0.03 2.11 16 28 N -0.09 -1.49 13.17 60.35 0.79 -0.70 16 29 N -0.27 -4.23 12.41 33.29 0.41 -3.82 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.10 1.11 6.55 -51.92 -0.34 0.77 16 35 H 0.19 0.67 7.46 -52.49 -0.39 0.28 16 36 H 0.40 3.42 7.39 -40.82 -0.30 3.12 16 37 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.19 2.31 6.74 -52.48 -0.35 1.95 16 40 H 0.13 2.13 8.14 -51.93 -0.42 1.70 16 41 H 0.04 0.80 6.31 -51.93 -0.33 0.47 16 42 H 0.09 2.05 7.16 -51.93 -0.37 1.68 16 43 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 44 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 45 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 383.83 15.07 5.78 5.78 Total: -1.00 -32.40 383.83 -7.64 -40.04 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -7.08 Total: 3.08 kcal Atomic # 6 Polarization: 6.78 SS G_CDS: -2.69 Total: 4.09 kcal Atomic # 7 Polarization: -61.97 SS G_CDS: 1.29 Total: -60.69 kcal Atomic # 8 Polarization: -7.76 SS G_CDS: 0.08 Total: -7.68 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.40 -7.64 -40.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094302080.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 229.355 kcal (2) G-P(sol) polarization free energy of solvation -32.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 196.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 189.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds