Wall clock time and date at job start Wed Apr 1 2020 02:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50697 * 109.47152 * 2 1 4 4 N 1.30446 * 125.99006 * 270.01720 * 3 2 1 5 5 N 1.39935 * 108.90003 * 179.72464 * 4 3 2 6 6 H 0.96998 * 125.75472 * 180.27595 * 5 4 3 7 7 C 1.34258 * 108.49136 * 0.43452 * 5 4 3 8 8 C 1.38054 * 107.41520 * 359.57809 * 7 5 4 9 9 C 1.47421 * 126.41174 * 180.26178 * 8 7 5 10 10 O 1.21602 * 119.99937 * 179.97438 * 9 8 7 11 11 N 1.34779 * 120.00515 * 359.97438 * 9 8 7 12 12 C 1.46501 * 120.00176 * 179.97438 * 11 9 8 13 13 C 1.50702 * 109.46753 * 179.97438 * 12 11 9 14 14 C 1.35349 * 126.75014 * 94.71890 * 13 12 11 15 15 N 1.35312 * 106.17591 * 179.84808 * 14 13 12 16 16 C 1.46493 * 125.87238 * 180.18171 * 15 14 13 17 17 C 1.53955 * 113.73996 * 14.03987 * 16 15 14 18 18 N 1.47809 * 86.03670 * 222.08333 * 17 16 15 19 19 C 1.36932 * 134.45772 * 204.64711 * 18 17 16 20 20 H 1.08000 * 120.00035 * 179.86381 * 19 18 17 21 21 C 1.38816 * 120.00168 * 359.86059 * 19 18 17 22 22 N 1.31620 * 119.99596 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 120.00225 * 180.02562 * 21 19 18 24 24 H 1.48491 * 109.47364 * 90.00053 * 23 21 19 25 25 H 1.48504 * 109.47053 * 210.00069 * 23 21 19 26 26 H 1.48503 * 109.47281 * 329.99529 * 23 21 19 27 27 C 1.47586 * 91.05179 * 24.54670 * 18 17 16 28 28 N 1.28723 * 108.26140 * 0.41567 * 15 14 13 29 29 N 1.28631 * 110.17884 * 359.73370 * 28 15 14 30 30 H 1.08998 * 109.47436 * 300.00556 * 1 2 3 31 31 H 1.09003 * 109.46561 * 60.00454 * 1 2 3 32 32 H 1.09004 * 109.47140 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47436 * 239.99444 * 2 1 3 34 34 H 1.09007 * 109.47001 * 119.99709 * 2 1 3 35 35 H 1.08002 * 126.29527 * 179.84921 * 7 5 4 36 36 H 0.97000 * 119.99526 * 359.97438 * 11 9 8 37 37 H 1.08991 * 109.46974 * 300.00073 * 12 11 9 38 38 H 1.09000 * 109.47030 * 60.00136 * 12 11 9 39 39 H 1.08003 * 126.91235 * 359.97438 * 14 13 12 40 40 H 1.08997 * 112.94637 * 145.62491 * 16 15 14 41 41 H 1.09001 * 113.76708 * 336.34662 * 17 16 15 42 42 H 1.09001 * 113.77118 * 107.74446 * 17 16 15 43 43 H 0.96996 * 119.99928 * 179.97438 * 22 21 19 44 44 H 1.09005 * 113.76920 * 221.15474 * 27 18 17 45 45 H 1.08993 * 113.87315 * 89.76970 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2875 2.1436 -1.0555 5 7 2.7275 3.4067 -0.6442 6 1 2.9802 4.1374 -1.2301 7 6 2.7443 3.4357 0.6979 8 6 2.3090 2.2035 1.1433 9 6 2.1609 1.7833 2.5485 10 8 1.7649 0.6636 2.8098 11 7 2.4644 2.6400 3.5438 12 6 2.3166 2.2225 4.9402 13 6 2.7187 3.3558 5.8485 14 6 1.8981 4.2754 6.4080 15 7 2.6902 5.0898 7.1430 16 6 2.2414 6.2368 7.9361 17 6 0.7190 6.2766 8.1617 18 7 0.8209 7.7271 7.8962 19 6 0.0714 8.8201 8.2406 20 1 0.3697 9.8047 7.9120 21 6 -1.0719 8.6627 9.0119 22 7 -1.4353 7.4628 9.4127 23 14 -2.0948 10.1536 9.4811 24 1 -3.1289 10.3913 8.4423 25 1 -2.7541 9.9098 10.7892 26 1 -1.2145 11.3451 9.5850 27 6 2.0556 7.5247 7.1135 28 7 3.9066 4.6866 7.0215 29 7 3.9575 3.6542 6.2559 30 1 -0.3634 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8901 32 1 -0.3634 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 3.0394 4.2709 1.3157 36 1 2.7806 3.5330 3.3354 37 1 1.2776 1.9544 5.1312 38 1 2.9554 1.3601 5.1312 39 1 0.8265 4.3439 6.2928 40 1 2.8237 6.3778 8.8466 41 1 0.1490 5.7313 7.4095 42 1 0.4195 6.0355 9.1817 43 1 -2.2339 7.3527 9.9519 44 1 2.8214 8.2782 7.2981 45 1 1.8811 7.3469 6.0524 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001094302080.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:02 Heat of formation + Delta-G solvation = 165.990470 kcal Electronic energy + Delta-G solvation = -28919.393011 eV Core-core repulsion = 24783.808004 eV Total energy + Delta-G solvation = -4135.585007 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.31436 -42.41588 -40.12593 -39.86593 -36.30097 -35.15003 -34.86723 -33.64928 -32.67406 -31.27402 -31.19150 -29.68714 -27.76564 -26.79504 -25.98518 -24.97743 -24.04706 -23.38536 -22.34191 -21.36316 -21.10800 -20.55295 -19.54131 -18.96472 -18.25957 -17.48868 -17.34013 -16.95646 -16.51714 -16.45691 -15.96391 -15.80025 -15.62247 -15.42052 -15.03927 -14.88326 -14.77699 -14.41057 -14.13949 -13.85977 -13.64874 -13.50771 -13.36356 -13.25065 -12.96283 -12.75572 -12.58903 -12.42374 -12.40226 -12.13786 -12.09559 -11.78004 -11.75551 -11.70614 -11.05867 -10.94829 -10.83433 -10.54928 -10.24401 -10.14960 -9.72952 -9.09426 -8.00041 -5.35031 0.55259 0.60629 1.11104 1.27894 1.32470 1.49105 1.50724 1.57900 1.82313 2.43436 2.48362 2.50592 3.09401 3.15673 3.32949 3.37471 3.47709 3.75021 3.78778 3.95743 4.02725 4.17706 4.19279 4.23320 4.41562 4.50432 4.53164 4.57246 4.60205 4.68387 4.72121 4.77289 4.97062 5.04255 5.08682 5.09165 5.13560 5.20360 5.31645 5.38486 5.42011 5.49630 5.69544 5.78754 6.26182 6.48112 6.67722 6.81548 7.33059 7.49822 7.50419 8.35068 9.16723 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.013355 B = 0.002111 C = 0.002003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2096.039942 B =13260.878009 C =13976.768997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.050 4.050 3 C 0.125 3.875 4 N -0.325 5.325 5 N -0.448 5.448 6 H 0.460 0.540 7 C 0.133 3.867 8 C -0.317 4.317 9 C 0.596 3.404 10 O -0.573 6.573 11 N -0.713 5.713 12 C 0.222 3.778 13 C -0.047 4.047 14 C -0.013 4.013 15 N -0.269 5.269 16 C 0.105 3.895 17 C 0.165 3.835 18 N -0.629 5.629 19 C -0.237 4.237 20 H 0.091 0.909 21 C -0.056 4.056 22 N -0.948 5.948 23 Si 0.978 3.022 24 H -0.286 1.286 25 H -0.295 1.295 26 H -0.267 1.267 27 C 0.126 3.874 28 N -0.109 5.109 29 N -0.280 5.280 30 H 0.043 0.957 31 H 0.052 0.948 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.226 0.774 36 H 0.408 0.592 37 H 0.096 0.904 38 H 0.080 0.920 39 H 0.207 0.793 40 H 0.137 0.863 41 H 0.048 0.952 42 H 0.062 0.938 43 H 0.253 0.747 44 H 0.076 0.924 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.559 -8.102 -17.248 20.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.089 4.089 3 C -0.043 4.043 4 N -0.147 5.147 5 N -0.154 5.154 6 H 0.308 0.692 7 C -0.022 4.022 8 C -0.332 4.332 9 C 0.385 3.615 10 O -0.453 6.453 11 N -0.365 5.365 12 C 0.097 3.903 13 C -0.186 4.186 14 C -0.166 4.166 15 N -0.061 5.061 16 C 0.003 3.997 17 C 0.038 3.962 18 N -0.356 5.356 19 C -0.364 4.364 20 H 0.109 0.891 21 C -0.250 4.250 22 N -0.596 5.596 23 Si 0.806 3.194 24 H -0.213 1.213 25 H -0.222 1.222 26 H -0.192 1.192 27 C 0.000 4.000 28 N -0.087 5.087 29 N -0.146 5.146 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.095 0.905 33 H 0.103 0.897 34 H 0.107 0.893 35 H 0.242 0.758 36 H 0.244 0.756 37 H 0.114 0.886 38 H 0.098 0.902 39 H 0.223 0.777 40 H 0.154 0.846 41 H 0.066 0.934 42 H 0.081 0.919 43 H 0.062 0.938 44 H 0.094 0.906 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 8.543 -8.389 -17.742 21.404 hybrid contribution -1.574 1.505 0.847 2.337 sum 6.969 -6.884 -16.895 19.529 Atomic orbital electron populations 1.21562 0.93521 1.02776 1.01191 1.20119 0.96888 0.87959 1.03909 1.22672 0.95035 0.97488 0.89097 1.77117 1.23008 0.91826 1.22784 1.46163 1.50505 1.12742 1.05970 0.69175 1.23716 0.94111 0.98553 0.85791 1.20281 1.22086 0.97126 0.93676 1.17359 0.76136 0.83997 0.84015 1.90733 1.48517 1.21369 1.84697 1.45704 1.68377 1.17442 1.04967 1.19229 1.02248 0.91488 0.77338 1.21917 0.89604 1.01384 1.05735 1.23835 1.01152 0.93451 0.98187 1.47702 1.05399 1.21831 1.31199 1.24667 0.98123 0.81788 0.95148 1.22621 0.87727 0.84972 1.00835 1.45913 1.27741 1.02898 1.59041 1.19325 1.03828 0.86347 1.26932 0.89114 1.25588 0.99373 0.99501 1.00582 1.69911 1.26687 1.22007 1.40998 0.85088 0.78571 0.78890 0.76827 1.21334 1.22197 1.19204 1.23022 0.88968 0.92953 0.95046 1.78293 1.02723 1.09871 1.17832 1.75019 1.22102 1.07709 1.09818 0.93747 0.92840 0.90525 0.89674 0.89341 0.75810 0.75602 0.88617 0.90202 0.77653 0.84550 0.93437 0.91936 0.93818 0.90634 0.92626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.42 9.89 71.98 0.71 -1.71 16 2 C -0.05 -0.98 5.97 29.85 0.18 -0.80 16 3 C 0.12 2.66 6.52 43.51 0.28 2.94 16 4 N -0.32 -6.44 12.63 -46.68 -0.59 -7.03 16 5 N -0.45 -5.38 7.29 -56.31 -0.41 -5.79 16 6 H 0.46 2.11 8.96 -213.43 -1.91 0.20 16 7 C 0.13 1.53 11.52 84.28 0.97 2.50 16 8 C -0.32 -6.13 6.13 -20.15 -0.12 -6.26 16 9 C 0.60 13.45 7.81 86.66 0.68 14.13 16 10 O -0.57 -16.52 14.92 -4.04 -0.06 -16.58 16 11 N -0.71 -13.31 5.54 -470.12 -2.60 -15.92 16 12 C 0.22 4.67 6.23 85.63 0.53 5.20 16 13 C -0.05 -1.16 6.62 41.60 0.28 -0.89 16 14 C -0.01 -0.33 10.72 83.49 0.89 0.57 16 15 N -0.27 -7.85 3.54 -332.02 -1.18 -9.02 16 16 C 0.11 3.33 5.14 46.75 0.24 3.57 16 17 C 0.16 6.48 6.90 86.44 0.60 7.08 16 18 N -0.63 -27.67 3.70 -716.62 -2.65 -30.33 16 19 C -0.24 -11.78 10.70 84.04 0.90 -10.88 16 20 H 0.09 4.31 7.83 -2.91 -0.02 4.28 16 21 C -0.06 -2.90 5.50 84.86 0.47 -2.44 16 22 N -0.95 -51.67 11.39 21.65 0.25 -51.43 16 23 Si 0.98 41.83 29.55 68.60 2.03 43.86 16 24 H -0.29 -12.15 7.11 99.48 0.71 -11.44 16 25 H -0.30 -12.89 7.11 99.48 0.71 -12.18 16 26 H -0.27 -10.81 7.11 99.48 0.71 -10.11 16 27 C 0.13 4.21 8.74 86.48 0.76 4.96 16 28 N -0.11 -3.42 13.17 37.02 0.49 -2.94 16 29 N -0.28 -8.36 12.41 -48.60 -0.60 -8.96 16 30 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 33 H 0.08 1.44 8.14 -2.39 -0.02 1.43 16 34 H 0.09 1.99 6.55 -2.38 -0.02 1.97 16 35 H 0.23 0.62 7.46 -2.91 -0.02 0.60 16 36 H 0.41 5.86 7.39 -92.71 -0.68 5.17 16 37 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.21 4.51 6.74 -2.91 -0.02 4.49 16 40 H 0.14 4.22 8.14 -2.39 -0.02 4.21 16 41 H 0.05 1.80 6.31 -2.39 -0.02 1.78 16 42 H 0.06 2.84 7.16 -2.39 -0.02 2.82 16 43 H 0.25 13.52 8.31 -92.71 -0.77 12.75 16 44 H 0.08 2.33 8.14 -2.38 -0.02 2.31 16 45 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -69.99 383.83 0.49 -69.50 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: -1.53 Total: 16.65 kcal Atomic # 6 Polarization: 10.62 SS G_CDS: 7.36 Total: 17.98 kcal Atomic # 7 Polarization: -124.11 SS G_CDS: -7.30 Total: -131.41 kcal Atomic # 8 Polarization: -16.52 SS G_CDS: -0.06 Total: -16.58 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal Total: -69.99 0.49 -69.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094302080.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 235.486 kcal (2) G-P(sol) polarization free energy of solvation -69.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 165.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 165.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds