Wall clock time and date at job start Wed Apr 1 2020 02:49:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30866 * 125.41654 * 2 1 4 4 C 1.33316 * 109.68671 * 179.97438 * 3 2 1 5 5 C 1.36666 * 107.78825 * 359.97438 * 4 3 2 6 6 C 1.46757 * 126.84719 * 179.97438 * 5 4 3 7 7 O 1.21683 * 119.99964 * 185.59047 * 6 5 4 8 8 N 1.34777 * 120.00247 * 5.59509 * 6 5 4 9 9 C 1.47067 * 136.05477 * 355.20930 * 8 6 5 10 10 C 1.53488 * 87.98469 * 153.14138 * 9 8 6 11 11 N 1.46510 * 114.20632 * 139.65548 * 10 9 8 12 12 C 1.35315 * 125.86580 * 351.11773 * 11 10 9 13 13 C 1.35345 * 106.17178 * 179.90178 * 12 11 10 14 14 C 1.50699 * 126.74860 * 180.12006 * 13 12 11 15 15 N 1.46505 * 109.46525 * 95.25240 * 14 13 12 16 16 C 1.36940 * 119.99504 * 180.02562 * 15 14 13 17 17 H 1.07998 * 120.00267 * 359.97438 * 16 15 14 18 18 C 1.38818 * 119.99777 * 180.02562 * 16 15 14 19 19 N 1.31616 * 120.00030 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00151 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47231 * 59.98968 * 20 18 16 22 22 H 1.48493 * 109.47164 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47015 * 299.99688 * 20 18 16 24 24 N 1.33770 * 106.50031 * 0.35762 * 13 12 11 25 25 N 1.28637 * 108.88301 * 359.76896 * 24 13 12 26 26 C 1.47066 * 136.06099 * 175.59276 * 8 6 5 27 27 N 1.34499 * 125.42330 * 180.22906 * 2 1 3 28 28 C 1.46497 * 126.47261 * 0.05706 * 27 2 1 29 29 H 1.09001 * 109.46840 * 90.03006 * 1 2 3 30 30 H 1.09002 * 109.46565 * 210.02426 * 1 2 3 31 31 H 1.08997 * 109.47507 * 330.02170 * 1 2 3 32 32 H 1.08001 * 126.11031 * 180.02562 * 4 3 2 33 33 H 1.08999 * 113.46771 * 267.92387 * 9 8 6 34 34 H 1.09004 * 113.46627 * 38.36096 * 9 8 6 35 35 H 1.09003 * 114.21278 * 272.48239 * 10 9 8 36 36 H 1.07997 * 126.90785 * 0.02562 * 12 11 10 37 37 H 1.09005 * 109.47342 * 215.24809 * 14 13 12 38 38 H 1.08998 * 109.47664 * 335.25500 * 14 13 12 39 39 H 0.96994 * 120.00132 * 0.02562 * 15 14 13 40 40 H 0.96996 * 120.00351 * 180.02562 * 19 18 16 41 41 H 1.09004 * 113.46369 * 321.63480 * 26 8 6 42 42 H 1.08989 * 113.46934 * 92.01802 * 26 8 6 43 43 H 1.09003 * 109.46832 * 274.99090 * 28 27 2 44 44 H 1.08999 * 109.47168 * 34.98245 * 28 27 2 45 45 H 1.08992 * 109.47757 * 154.98940 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0665 0.0000 4 6 3.5486 0.7051 0.0006 5 6 3.5977 -0.6607 0.0015 6 6 4.8029 -1.4980 0.0019 7 8 4.7042 -2.7066 -0.0999 8 7 6.0192 -0.9285 0.1150 9 6 6.5450 0.4440 0.1681 10 6 7.7346 -0.1006 0.9706 11 7 9.0258 0.4870 0.6043 12 6 9.2554 1.3003 -0.4526 13 6 10.5730 1.6071 -0.4128 14 6 11.3228 2.4898 -1.3770 15 7 11.3937 3.8507 -0.8391 16 6 12.0319 4.8341 -1.5468 17 1 12.4833 4.6064 -2.5012 18 6 12.0997 6.1235 -1.0369 19 7 11.5501 6.4008 0.1264 20 14 12.9708 7.4649 -2.0018 21 1 12.3099 7.6348 -3.3208 22 1 12.9030 8.7416 -1.2465 23 1 14.3918 7.0847 -2.2057 24 7 11.0800 0.9686 0.6478 25 7 10.1376 0.3138 1.2291 26 6 7.4053 -1.4058 0.2329 27 7 2.2866 -1.0960 -0.0044 28 6 1.8313 -2.4884 -0.0111 29 1 -0.3633 -0.0005 -1.0277 30 1 -0.3632 -0.8898 0.5142 31 1 -0.3634 0.8901 0.5135 32 1 4.3978 1.3724 0.0011 33 1 6.8246 0.8397 -0.8082 34 1 5.9150 1.1285 0.7362 35 1 7.5669 -0.1409 2.0469 36 1 8.5323 1.6382 -1.1800 37 1 12.3316 2.1011 -1.5164 38 1 10.8035 2.5045 -2.3353 39 1 10.9887 4.0550 0.0182 40 1 11.5970 7.3018 0.4825 41 1 7.5068 -2.2942 0.8563 42 1 7.9137 -1.5036 -0.7261 43 1 1.6326 -2.8106 1.0111 44 1 0.9186 -2.5695 -0.6014 45 1 2.6038 -3.1212 -0.4478 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105312539.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:55 Heat of formation + Delta-G solvation = 200.879490 kcal Electronic energy + Delta-G solvation = -28922.744997 eV Core-core repulsion = 24788.672891 eV Total energy + Delta-G solvation = -4134.072105 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.19818 -42.76962 -40.78892 -38.41381 -35.04638 -34.63229 -33.61429 -32.51778 -31.86165 -30.13264 -29.94349 -28.03362 -27.53917 -26.58688 -25.80357 -24.47351 -22.87665 -22.73971 -21.21821 -20.81466 -20.52753 -19.75194 -18.16501 -17.63932 -17.19671 -17.13120 -16.64089 -16.29139 -15.92867 -15.40281 -14.83283 -14.80085 -14.62752 -14.16718 -14.03153 -13.86331 -13.75552 -13.58812 -13.36845 -13.31301 -13.13870 -13.06239 -12.91063 -12.87372 -12.65381 -11.95906 -11.70786 -11.27141 -10.97858 -10.88407 -10.78670 -10.52219 -10.35388 -10.22381 -10.12631 -9.95635 -9.73838 -9.53082 -8.96285 -8.92877 -8.86206 -6.91799 -5.73292 -3.03157 0.74518 1.53828 1.67751 2.17250 2.25816 2.57253 2.83567 2.84889 3.30795 3.47251 3.51658 3.52823 3.59749 3.84828 4.02530 4.21213 4.24789 4.36275 4.57760 4.61783 4.63771 4.64155 4.69891 4.81031 4.87758 4.93750 4.95658 5.01301 5.06504 5.15124 5.23753 5.30085 5.43282 5.60665 5.64400 5.74496 5.99241 6.16636 6.34688 6.50231 6.61910 6.64091 6.75202 6.88017 7.34599 7.52125 7.71389 8.43867 8.75435 9.55708 10.10821 10.46688 11.49296 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.014357 B = 0.002071 C = 0.001862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.752948 B =13519.319062 C =15034.796937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.234 3.766 3 N -0.491 5.491 4 C 0.046 3.954 5 C -0.092 4.092 6 C 0.637 3.363 7 O -0.537 6.537 8 N -0.634 5.634 9 C 0.089 3.911 10 C 0.114 3.886 11 N -0.293 5.293 12 C -0.046 4.046 13 C 0.001 3.999 14 C 0.231 3.769 15 N -0.725 5.725 16 C -0.241 4.241 17 H 0.073 0.927 18 C -0.012 4.012 19 N -0.932 5.932 20 Si 0.910 3.090 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.285 1.285 24 N -0.249 5.249 25 N -0.089 5.089 26 C 0.108 3.892 27 N -0.425 5.425 28 C 0.061 3.939 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.097 0.903 32 H 0.182 0.818 33 H 0.110 0.890 34 H 0.107 0.893 35 H 0.151 0.849 36 H 0.190 0.810 37 H 0.040 0.960 38 H 0.038 0.962 39 H 0.386 0.614 40 H 0.256 0.744 41 H 0.100 0.900 42 H 0.100 0.900 43 H 0.081 0.919 44 H 0.088 0.912 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.743 -19.361 0.044 31.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.028 4.028 3 N -0.210 5.210 4 C -0.109 4.109 5 C -0.208 4.208 6 C 0.428 3.572 7 O -0.415 6.415 8 N -0.370 5.370 9 C -0.035 4.035 10 C 0.010 3.990 11 N -0.088 5.088 12 C -0.196 4.196 13 C -0.136 4.136 14 C 0.102 3.898 15 N -0.370 5.370 16 C -0.372 4.372 17 H 0.091 0.909 18 C -0.209 4.209 19 N -0.580 5.580 20 Si 0.740 3.260 21 H -0.212 1.212 22 H -0.217 1.217 23 H -0.212 1.212 24 N -0.117 5.117 25 N -0.067 5.067 26 C -0.016 4.016 27 N -0.105 5.105 28 C -0.080 4.080 29 H 0.105 0.895 30 H 0.096 0.904 31 H 0.115 0.885 32 H 0.199 0.801 33 H 0.128 0.872 34 H 0.125 0.875 35 H 0.169 0.831 36 H 0.207 0.793 37 H 0.057 0.943 38 H 0.056 0.944 39 H 0.219 0.781 40 H 0.066 0.934 41 H 0.119 0.881 42 H 0.118 0.882 43 H 0.100 0.900 44 H 0.107 0.893 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -24.603 -20.129 1.046 31.805 hybrid contribution 0.018 0.567 -1.047 1.191 sum -24.586 -19.561 -0.002 31.418 Atomic orbital electron populations 1.20316 0.84074 1.04634 1.04113 1.23554 0.96069 0.80990 1.02208 1.70187 1.02076 1.27996 1.20702 1.22962 0.95439 0.91231 1.01314 1.20358 0.84919 0.94728 1.20778 1.16002 0.79889 0.85818 0.75503 1.90810 1.85581 1.14102 1.51031 1.48645 1.04749 1.09839 1.73750 1.23689 0.91930 0.86194 1.01725 1.23293 0.78637 0.94727 1.02338 1.46963 1.08737 1.33508 1.19551 1.23344 0.99451 1.00839 0.95944 1.22492 0.91950 1.01389 0.97807 1.18973 0.95999 0.83952 0.90836 1.42288 1.67779 1.02900 1.24069 1.19176 1.28036 0.88645 1.01353 0.90934 1.24760 1.01347 0.97567 0.97187 1.69663 1.49429 1.20151 1.18746 0.86235 0.79481 0.81369 0.78878 1.21234 1.21742 1.21196 1.75139 1.21846 1.07868 1.06797 1.78319 0.87661 1.20672 1.20041 1.23418 0.78997 0.97816 1.01331 1.45086 1.04885 1.08489 1.52084 1.22355 1.02721 0.78788 1.04180 0.89507 0.90410 0.88452 0.80079 0.87212 0.87466 0.83107 0.79321 0.94253 0.94399 0.78071 0.93438 0.88146 0.88189 0.90042 0.89306 0.87315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.29 10.01 36.00 0.36 0.07 16 2 C 0.23 1.95 7.88 -155.60 -1.23 0.72 16 3 N -0.49 -5.23 11.20 -10.58 -0.12 -5.35 16 4 C 0.05 0.43 11.00 -17.48 -0.19 0.24 16 5 C -0.09 -0.90 6.91 -82.14 -0.57 -1.46 16 6 C 0.64 6.53 8.03 -12.82 -0.10 6.42 16 7 O -0.54 -6.80 15.54 5.20 0.08 -6.72 16 8 N -0.63 -5.09 3.69 -186.80 -0.69 -5.78 16 9 C 0.09 0.55 6.50 -8.52 -0.06 0.49 16 10 C 0.11 0.89 5.33 -67.81 -0.36 0.53 16 11 N -0.29 -3.61 3.56 -54.57 -0.19 -3.80 16 12 C -0.05 -0.62 10.72 -17.05 -0.18 -0.80 16 13 C 0.00 0.02 6.61 -82.78 -0.55 -0.53 16 14 C 0.23 4.68 6.82 -5.19 -0.04 4.65 16 15 N -0.73 -18.54 5.59 -61.08 -0.34 -18.88 16 16 C -0.24 -6.71 9.99 -15.06 -0.15 -6.86 16 17 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 18 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 19 N -0.93 -28.40 13.06 55.49 0.72 -27.67 16 20 Si 0.91 22.34 29.55 -169.99 -5.02 17.32 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 N -0.25 -4.82 12.41 33.29 0.41 -4.40 16 25 N -0.09 -1.45 13.17 60.35 0.79 -0.66 16 26 C 0.11 0.80 8.43 -8.51 -0.07 0.73 16 27 N -0.42 -3.58 3.17 -117.28 -0.37 -3.96 16 28 C 0.06 0.33 10.37 59.85 0.62 0.96 16 29 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.08 0.15 7.80 -51.93 -0.40 -0.25 16 31 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.18 1.31 5.23 -52.49 -0.27 1.03 16 33 H 0.11 0.58 6.38 -51.93 -0.33 0.25 16 34 H 0.11 0.52 6.14 -51.93 -0.32 0.20 16 35 H 0.15 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.19 1.83 6.77 -52.49 -0.36 1.48 16 37 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.39 10.63 7.66 -40.82 -0.31 10.32 16 40 H 0.26 7.54 8.31 -40.82 -0.34 7.21 16 41 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.09 0.24 7.89 -51.93 -0.41 -0.17 16 45 H 0.11 0.79 6.15 -51.93 -0.32 0.47 16 LS Contribution 381.66 15.07 5.75 5.75 Total: -1.00 -38.37 381.66 -7.24 -45.61 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -5.65 Total: 3.82 kcal Atomic # 6 Polarization: 7.32 SS G_CDS: -2.61 Total: 4.71 kcal Atomic # 7 Polarization: -70.70 SS G_CDS: 0.22 Total: -70.48 kcal Atomic # 8 Polarization: -6.80 SS G_CDS: 0.08 Total: -6.72 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -38.37 -7.24 -45.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105312539.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 246.487 kcal (2) G-P(sol) polarization free energy of solvation -38.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 208.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 200.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds