Wall clock time and date at job start Wed Apr 1 2020 02:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50699 * 109.47269 * 2 1 4 4 N 1.33322 * 126.10533 * 270.02478 * 3 2 1 5 5 C 1.30859 * 109.68639 * 179.97438 * 4 3 2 6 6 N 1.34496 * 109.16400 * 0.02562 * 5 4 3 7 7 H 0.96993 * 126.47320 * 180.25988 * 6 5 4 8 8 C 1.36658 * 126.10953 * 89.99750 * 3 2 1 9 9 C 1.46760 * 126.84668 * 0.04433 * 8 3 2 10 10 O 1.21687 * 119.99773 * 359.97438 * 9 8 3 11 11 N 1.34774 * 120.00377 * 179.97438 * 9 8 3 12 12 C 1.47073 * 136.05616 * 359.62809 * 11 9 8 13 13 C 1.53757 * 87.88599 * 152.96315 * 12 11 9 14 14 N 1.46502 * 114.08221 * 139.77818 * 13 12 11 15 15 C 1.35312 * 125.87013 * 351.27919 * 14 13 12 16 16 C 1.35351 * 106.17142 * 179.90218 * 15 14 13 17 17 C 1.50704 * 126.75103 * 180.12424 * 16 15 14 18 18 N 1.46505 * 109.46909 * 95.24708 * 17 16 15 19 19 C 1.36940 * 120.00001 * 180.02562 * 18 17 16 20 20 H 1.08007 * 119.99878 * 0.02562 * 19 18 17 21 21 C 1.38810 * 120.00232 * 179.97438 * 19 18 17 22 22 N 1.31623 * 119.99821 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00175 * 179.97438 * 21 19 18 24 24 H 1.48509 * 109.46953 * 59.99872 * 23 21 19 25 25 H 1.48494 * 109.47229 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.47180 * 300.00302 * 23 21 19 27 27 N 1.33768 * 106.50073 * 0.35115 * 16 15 14 28 28 N 1.28634 * 108.88421 * 359.77412 * 27 16 15 29 29 C 1.47070 * 136.05979 * 180.02562 * 11 9 8 30 30 H 1.09005 * 109.47400 * 180.02562 * 1 2 3 31 31 H 1.09010 * 109.46994 * 300.00186 * 1 2 3 32 32 H 1.09001 * 109.47423 * 59.99764 * 1 2 3 33 33 H 1.09001 * 109.47219 * 239.99714 * 2 1 3 34 34 H 1.09003 * 109.46924 * 119.99659 * 2 1 3 35 35 H 1.07997 * 125.41811 * 180.02562 * 5 4 3 36 36 H 1.09001 * 113.46475 * 267.69838 * 12 11 9 37 37 H 1.08997 * 113.46463 * 38.13479 * 12 11 9 38 38 H 1.08990 * 114.40012 * 272.67848 * 13 12 11 39 39 H 1.07997 * 126.91595 * 0.02562 * 15 14 13 40 40 H 1.08994 * 109.47528 * 215.24632 * 17 16 15 41 41 H 1.09000 * 109.46747 * 335.24944 * 17 16 15 42 42 H 0.97000 * 119.99987 * 0.02562 * 18 17 16 43 43 H 0.96997 * 119.99684 * 179.97438 * 22 21 19 44 44 H 1.08996 * 113.46797 * 321.86547 * 29 11 9 45 45 H 1.08996 * 113.46686 * 92.24635 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2938 2.1616 -1.0772 5 6 2.7119 3.3452 -0.7073 6 7 2.7341 3.4057 0.6361 7 1 2.9996 4.1674 1.1747 8 6 2.3008 2.1801 1.1040 9 6 2.1582 1.7743 2.5072 10 8 1.7632 0.6561 2.7800 11 7 2.4646 2.6400 3.4936 12 6 2.9602 4.0224 3.5733 13 6 2.2537 4.1369 4.9341 14 7 3.0215 4.8656 5.9469 15 6 4.3072 5.2702 5.8279 16 6 4.6123 5.9017 6.9855 17 6 5.9305 6.5372 7.3457 18 7 5.8829 7.9686 7.0373 19 6 6.9747 8.7583 7.2816 20 1 7.8710 8.3258 7.7012 21 6 6.9299 10.1145 6.9889 22 7 5.8381 10.6413 6.4761 23 14 8.4189 11.1918 7.3228 24 1 9.5766 10.6933 6.5374 25 1 8.1172 12.5904 6.9254 26 1 8.7472 11.1478 8.7704 27 7 3.5154 5.8464 7.7490 28 7 2.5906 5.2262 7.1049 29 6 2.4574 2.6156 4.9641 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8901 32 1 -0.3634 0.5139 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.9942 4.1460 -1.3746 36 1 4.0460 4.0910 3.6407 37 1 2.5425 4.6779 2.8091 38 1 1.2105 4.4473 4.8751 39 1 4.9583 5.1211 4.9792 40 1 6.1207 6.4010 8.4103 41 1 6.7291 6.0680 6.7710 42 1 5.0781 8.3570 6.6601 43 1 5.8067 11.5890 6.2720 44 1 1.6113 2.0725 5.3851 45 1 3.4103 2.3129 5.3979 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105368431.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:47 Heat of formation + Delta-G solvation = 188.285995 kcal Electronic energy + Delta-G solvation = -29017.179426 eV Core-core repulsion = 24882.561226 eV Total energy + Delta-G solvation = -4134.618200 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.30514 -42.77400 -40.83291 -38.48144 -35.13889 -34.70070 -33.67319 -32.57877 -31.95139 -30.36634 -30.05220 -28.92520 -27.13880 -25.98798 -24.97114 -23.84894 -22.99549 -22.88551 -21.63474 -21.03605 -20.74146 -19.80674 -18.66517 -17.91553 -17.22881 -17.21790 -16.56559 -16.12941 -15.92013 -15.46444 -15.13550 -14.84689 -14.62652 -14.35546 -14.27544 -13.99943 -13.82176 -13.76536 -13.49855 -13.24811 -13.07389 -12.74433 -12.71737 -12.07675 -11.91771 -11.78288 -11.38038 -11.36597 -11.00640 -10.94580 -10.84934 -10.61941 -10.54285 -10.36559 -10.19229 -10.05142 -9.81630 -9.63888 -9.03886 -9.00963 -8.93664 -6.99624 -5.80781 -3.10834 0.72532 1.55783 1.62571 2.23621 2.34079 2.42206 2.74288 2.79332 3.14975 3.41423 3.46306 3.47190 3.55383 3.89339 3.99378 4.04998 4.30401 4.41480 4.51651 4.56003 4.59356 4.62022 4.86553 4.90141 5.02166 5.11505 5.13140 5.16800 5.23704 5.31657 5.32794 5.52047 5.64628 5.71235 5.86597 5.92276 6.08092 6.10059 6.25044 6.52655 6.53100 6.62969 6.66911 6.80197 7.35965 7.46117 7.64440 8.36377 8.65436 9.48327 10.02769 10.38621 11.41764 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.016183 B = 0.002058 C = 0.001880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.779656 B =13604.497334 C =14886.521942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.051 4.051 3 C 0.110 3.890 4 N -0.497 5.497 5 C 0.228 3.772 6 N -0.557 5.557 7 H 0.421 0.579 8 C -0.094 4.094 9 C 0.634 3.366 10 O -0.508 6.508 11 N -0.647 5.647 12 C 0.086 3.914 13 C 0.118 3.882 14 N -0.294 5.294 15 C -0.049 4.049 16 C 0.003 3.997 17 C 0.231 3.769 18 N -0.725 5.725 19 C -0.242 4.242 20 H 0.073 0.927 21 C -0.012 4.012 22 N -0.932 5.932 23 Si 0.910 3.090 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.285 1.285 27 N -0.248 5.248 28 N -0.086 5.086 29 C 0.105 3.895 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.078 0.922 34 H 0.093 0.907 35 H 0.219 0.781 36 H 0.109 0.891 37 H 0.092 0.908 38 H 0.152 0.848 39 H 0.188 0.812 40 H 0.041 0.959 41 H 0.038 0.962 42 H 0.385 0.615 43 H 0.256 0.744 44 H 0.102 0.898 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.994 -19.384 -14.847 26.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.090 4.090 3 C -0.025 4.025 4 N -0.216 5.216 5 C -0.056 4.056 6 N -0.164 5.164 7 H 0.262 0.738 8 C -0.210 4.210 9 C 0.425 3.575 10 O -0.382 6.382 11 N -0.385 5.385 12 C -0.038 4.038 13 C 0.014 3.986 14 N -0.089 5.089 15 C -0.199 4.199 16 C -0.134 4.134 17 C 0.102 3.898 18 N -0.370 5.370 19 C -0.373 4.373 20 H 0.091 0.909 21 C -0.208 4.208 22 N -0.580 5.580 23 Si 0.741 3.259 24 H -0.212 1.212 25 H -0.217 1.217 26 H -0.211 1.211 27 N -0.115 5.115 28 N -0.065 5.065 29 C -0.018 4.018 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.097 0.903 34 H 0.112 0.888 35 H 0.235 0.765 36 H 0.127 0.873 37 H 0.110 0.890 38 H 0.169 0.831 39 H 0.205 0.795 40 H 0.058 0.942 41 H 0.056 0.944 42 H 0.219 0.781 43 H 0.066 0.934 44 H 0.121 0.879 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -10.415 -20.389 -14.658 27.185 hybrid contribution 1.728 1.801 0.154 2.501 sum -8.687 -18.588 -14.504 25.126 Atomic orbital electron populations 1.21622 0.94145 1.01989 1.01843 1.20102 0.96392 0.88570 1.03890 1.21112 0.97922 0.97003 0.86430 1.70196 1.18512 1.02664 1.30220 1.25281 1.00414 0.97916 0.82023 1.43622 1.50488 1.13267 1.09014 0.73760 1.20648 1.17435 0.88783 0.94091 1.16191 0.76926 0.82997 0.81362 1.90875 1.46499 1.18619 1.82201 1.49119 1.66950 1.14984 1.07399 1.23594 1.01318 0.83087 0.95839 1.23323 0.97815 0.92121 0.85381 1.46977 1.09739 1.38925 1.13240 1.23308 0.87092 1.06359 1.03091 1.22509 0.97972 1.01432 0.91509 1.18982 0.86354 0.85897 0.98573 1.42285 1.16448 1.01495 1.76812 1.19180 0.92722 0.89948 1.35418 0.90902 1.24763 0.97515 0.96855 1.01709 1.69668 1.26914 1.12243 1.49221 0.86228 0.81960 0.79697 0.78034 1.21226 1.21718 1.21127 1.75151 0.98385 1.13004 1.24991 1.78340 1.22394 1.14210 0.91531 1.23400 1.04819 0.93612 0.80006 0.91981 0.92670 0.92723 0.90312 0.88842 0.76482 0.87334 0.89004 0.83086 0.79484 0.94156 0.94407 0.78113 0.93429 0.87924 0.88211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 9.89 37.16 0.37 -0.76 16 2 C -0.05 -0.46 5.93 -27.89 -0.17 -0.62 16 3 C 0.11 1.09 6.40 -82.52 -0.53 0.56 16 4 N -0.50 -4.71 11.20 -10.65 -0.12 -4.83 16 5 C 0.23 1.38 13.01 -90.57 -1.18 0.20 16 6 N -0.56 -3.20 5.98 -10.79 -0.06 -3.27 16 7 H 0.42 1.31 6.04 -40.82 -0.25 1.06 16 8 C -0.09 -0.83 7.04 -82.14 -0.58 -1.41 16 9 C 0.63 6.11 8.04 -12.82 -0.10 6.01 16 10 O -0.51 -6.28 15.59 5.20 0.08 -6.20 16 11 N -0.65 -4.64 3.69 -186.57 -0.69 -5.32 16 12 C 0.09 0.42 6.73 -8.36 -0.06 0.37 16 13 C 0.12 0.83 5.35 -67.66 -0.36 0.47 16 14 N -0.29 -3.40 3.56 -54.43 -0.19 -3.60 16 15 C -0.05 -0.62 10.71 -17.05 -0.18 -0.80 16 16 C 0.00 0.05 6.61 -82.78 -0.55 -0.49 16 17 C 0.23 4.53 6.82 -5.19 -0.04 4.49 16 18 N -0.73 -18.05 5.59 -61.08 -0.34 -18.39 16 19 C -0.24 -6.58 9.99 -15.06 -0.15 -6.73 16 20 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 21 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 22 N -0.93 -27.81 13.06 55.49 0.72 -27.09 16 23 Si 0.91 21.89 29.55 -169.99 -5.02 16.87 16 24 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 25 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 26 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 27 N -0.25 -4.65 12.41 33.29 0.41 -4.24 16 28 N -0.09 -1.36 13.17 60.35 0.79 -0.57 16 29 C 0.11 0.73 8.42 -8.49 -0.07 0.65 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.05 0.50 8.14 -51.92 -0.42 0.08 16 32 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.09 0.91 6.48 -51.93 -0.34 0.57 16 35 H 0.22 0.40 8.06 -52.49 -0.42 -0.02 16 36 H 0.11 0.43 6.38 -51.93 -0.33 0.10 16 37 H 0.09 0.26 6.43 -51.93 -0.33 -0.07 16 38 H 0.15 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.19 1.64 6.77 -52.49 -0.36 1.28 16 40 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.39 10.34 7.66 -40.82 -0.31 10.03 16 43 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 44 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 382.80 15.07 5.77 5.77 Total: -1.00 -37.22 382.80 -8.02 -45.25 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -5.69 Total: 4.11 kcal Atomic # 6 Polarization: 5.19 SS G_CDS: -3.69 Total: 1.50 kcal Atomic # 7 Polarization: -67.82 SS G_CDS: 0.53 Total: -67.30 kcal Atomic # 8 Polarization: -6.28 SS G_CDS: 0.08 Total: -6.20 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -37.22 -8.02 -45.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105368431.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 233.532 kcal (2) G-P(sol) polarization free energy of solvation -37.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 196.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 188.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds