Wall clock time and date at job start Wed Apr 1 2020 03:12:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46735 * 2 1 4 4 C 1.50699 * 109.47476 * 120.00112 * 2 1 3 5 5 O 1.21275 * 120.00132 * 119.99966 * 4 2 1 6 6 N 1.34780 * 119.99675 * 300.00384 * 4 2 1 7 7 C 1.46500 * 119.99649 * 179.97438 * 6 4 2 8 8 H 1.09005 * 110.85533 * 37.33471 * 7 6 4 9 9 C 1.54623 * 110.96843 * 273.54360 * 7 6 4 10 10 C 1.51286 * 104.19583 * 217.08363 * 9 7 6 11 11 O 1.21283 * 124.94068 * 196.22850 * 10 9 7 12 12 N 1.34417 * 110.11517 * 16.49747 * 10 9 7 13 13 C 1.46497 * 124.35094 * 180.16242 * 12 10 9 14 14 C 1.53949 * 113.74131 * 38.76337 * 13 12 10 15 15 N 1.47809 * 86.03405 * 222.08543 * 14 13 12 16 16 C 1.36944 * 134.45428 * 204.64322 * 15 14 13 17 17 H 1.07995 * 120.00109 * 179.86787 * 16 15 14 18 18 C 1.38809 * 119.99873 * 359.86813 * 16 15 14 19 19 N 1.31620 * 120.00226 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 120.00017 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46726 * 60.00109 * 20 18 16 22 22 H 1.48494 * 109.47008 * 180.02562 * 20 18 16 23 23 H 1.48495 * 109.46961 * 300.00208 * 20 18 16 24 24 C 1.47572 * 91.05547 * 24.54875 * 15 14 13 25 25 C 1.46762 * 111.30037 * 0.02562 * 12 10 9 26 26 C 1.53001 * 109.47052 * 240.00446 * 2 1 3 27 27 F 1.39899 * 109.46855 * 299.99730 * 26 2 1 28 28 F 1.39899 * 109.47394 * 59.99414 * 26 2 1 29 29 H 1.08995 * 109.47144 * 299.99875 * 1 2 3 30 30 H 1.09002 * 109.47023 * 60.00000 * 1 2 3 31 31 H 1.09000 * 109.46730 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46912 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.47365 * 299.99790 * 3 2 1 34 34 H 1.08995 * 109.47203 * 60.00160 * 3 2 1 35 35 H 0.96998 * 120.00319 * 359.97438 * 6 4 2 36 36 H 1.09000 * 110.48720 * 98.40897 * 9 7 6 37 37 H 1.09003 * 110.60041 * 335.81573 * 9 7 6 38 38 H 1.09000 * 112.94291 * 170.35350 * 13 12 10 39 39 H 1.08997 * 113.76893 * 336.34946 * 14 13 12 40 40 H 1.09000 * 113.76451 * 107.74481 * 14 13 12 41 41 H 0.96999 * 119.99865 * 180.02562 * 19 18 16 42 42 H 1.08996 * 113.77356 * 221.15141 * 24 15 14 43 43 H 1.09000 * 113.77234 * 89.75283 * 24 15 14 44 44 H 1.09004 * 110.38933 * 224.25961 * 25 12 10 45 45 H 1.08995 * 110.11843 * 102.33377 * 25 12 10 46 46 H 1.09001 * 109.46989 * 179.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0325 -0.7104 1.2304 5 8 2.7297 -1.6964 1.1191 6 7 1.7068 -0.2500 2.4545 7 6 2.1948 -0.9409 3.6507 8 1 3.2102 -1.3074 3.5000 9 6 1.2442 -2.0930 4.0506 10 6 1.2485 -2.0693 5.5633 11 8 0.8592 -2.9723 6.2732 12 7 1.7412 -0.8997 6.0059 13 6 1.8886 -0.5470 7.4202 14 6 2.3518 -1.7179 8.3059 15 7 1.3543 -1.2373 9.2851 16 6 1.2158 -1.3428 10.6434 17 1 0.3709 -0.8859 11.1371 18 6 2.1613 -2.0370 11.3857 19 7 3.1913 -2.5934 10.7841 20 14 1.9727 -2.1802 13.2386 21 1 0.6942 -2.8666 13.5544 22 1 3.1059 -2.9641 13.7923 23 1 1.9683 -0.8234 13.8421 24 6 0.5695 -0.5966 8.2121 25 6 2.1154 -0.0225 4.8904 26 6 2.0400 -0.7212 -1.2493 27 9 1.5737 -2.0401 -1.2493 28 9 1.5736 -0.0617 -2.3916 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1300 1.4426 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.1494 0.5388 2.5436 36 1 1.6242 -3.0462 3.6830 37 1 0.2394 -1.9112 3.6692 38 1 2.4577 0.3701 7.5723 39 1 2.1229 -2.6996 7.8914 40 1 3.3830 -1.6289 8.6477 41 1 3.8518 -3.0787 11.3028 42 1 0.1802 0.3858 8.4792 43 1 -0.1842 -1.2483 7.7700 44 1 3.0843 0.4399 5.0794 45 1 1.3543 0.7439 4.7445 46 1 3.1300 -0.7208 -1.2495 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108572407.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:12:50 Heat of formation + Delta-G solvation = -106.689916 kcal Electronic energy + Delta-G solvation = -30999.036212 eV Core-core repulsion = 26368.644959 eV Total energy + Delta-G solvation = -4630.391253 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.34805 -47.28677 -40.98839 -39.99117 -37.33561 -36.52200 -35.83455 -34.15608 -32.16864 -30.33429 -28.12118 -27.64285 -27.15516 -26.80827 -24.75900 -23.95731 -23.29187 -21.65004 -20.64847 -20.13595 -18.41044 -18.34091 -17.63473 -17.40820 -16.86422 -16.77767 -16.38012 -16.06046 -15.52543 -15.23720 -14.98420 -14.69175 -14.30100 -14.13236 -13.87750 -13.71553 -13.67243 -13.63940 -13.53024 -13.44026 -13.16652 -12.87729 -12.81856 -12.63178 -12.48115 -12.09276 -11.93093 -11.84751 -11.59255 -11.44046 -11.23919 -11.15265 -10.84356 -10.71784 -10.28562 -10.21483 -10.01270 -9.79306 -9.50723 -9.21666 -8.67676 -8.23153 -6.82822 -5.72688 -3.05004 2.06456 2.37798 2.88590 3.17755 3.24357 3.42306 3.46748 3.48012 3.73794 3.83794 3.89814 4.15140 4.30092 4.42328 4.50767 4.57365 4.71007 4.73711 4.81792 4.90033 5.03297 5.05771 5.12723 5.20098 5.27347 5.35507 5.42498 5.51080 5.52940 5.58371 5.59035 5.71883 5.80686 5.98783 6.26172 6.49168 6.54874 6.83845 6.91636 7.27902 7.45017 7.57420 7.60780 7.65025 8.00496 8.51272 9.07706 9.74011 10.62674 11.44466 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.036085 B = 0.002006 C = 0.001978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.749039 B =13957.190236 C =14152.780715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.135 4.135 3 C -0.144 4.144 4 C 0.531 3.469 5 O -0.521 6.521 6 N -0.713 5.713 7 C 0.135 3.865 8 H 0.113 0.887 9 C -0.167 4.167 10 C 0.515 3.485 11 O -0.505 6.505 12 N -0.606 5.606 13 C 0.098 3.902 14 C 0.153 3.847 15 N -0.605 5.605 16 C -0.222 4.222 17 H 0.080 0.920 18 C -0.008 4.008 19 N -0.919 5.919 20 Si 0.914 3.086 21 H -0.285 1.285 22 H -0.290 1.290 23 H -0.284 1.284 24 C 0.112 3.888 25 C 0.100 3.900 26 C 0.286 3.714 27 F -0.191 7.191 28 F -0.201 7.201 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.403 0.597 36 H 0.105 0.895 37 H 0.103 0.897 38 H 0.106 0.894 39 H 0.056 0.944 40 H 0.071 0.929 41 H 0.254 0.746 42 H 0.042 0.958 43 H 0.040 0.960 44 H 0.087 0.913 45 H 0.072 0.928 46 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.038 12.298 -27.056 29.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.139 4.139 3 C -0.201 4.201 4 C 0.316 3.684 5 O -0.395 6.395 6 N -0.365 5.365 7 C 0.030 3.970 8 H 0.131 0.869 9 C -0.208 4.208 10 C 0.301 3.699 11 O -0.379 6.379 12 N -0.341 5.341 13 C -0.004 4.004 14 C 0.027 3.973 15 N -0.331 5.331 16 C -0.349 4.349 17 H 0.098 0.902 18 C -0.204 4.204 19 N -0.566 5.566 20 Si 0.744 3.256 21 H -0.212 1.212 22 H -0.215 1.215 23 H -0.211 1.211 24 C -0.015 4.015 25 C -0.025 4.025 26 C 0.232 3.768 27 F -0.172 7.172 28 F -0.183 7.183 29 H 0.093 0.907 30 H 0.097 0.903 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.099 0.901 34 H 0.095 0.905 35 H 0.239 0.761 36 H 0.123 0.877 37 H 0.121 0.879 38 H 0.124 0.876 39 H 0.074 0.926 40 H 0.089 0.911 41 H 0.064 0.936 42 H 0.060 0.940 43 H 0.057 0.943 44 H 0.105 0.895 45 H 0.090 0.910 46 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -1.642 10.981 -26.337 28.582 hybrid contribution -0.525 0.219 0.916 1.078 sum -2.167 11.200 -25.421 27.863 Atomic orbital electron populations 1.21892 0.90243 1.04202 1.04125 1.21902 1.00181 0.98535 0.93311 1.21881 1.02281 0.91515 1.04471 1.19930 0.80154 0.84233 0.84130 1.90805 1.37053 1.25234 1.86446 1.45822 1.53803 1.32044 1.04842 1.21859 0.99460 0.92206 0.83517 0.86867 1.22826 1.01934 1.01347 0.94733 1.20591 0.77430 0.82095 0.89764 1.90801 1.46536 1.38589 1.62016 1.48503 1.63166 1.16179 1.06295 1.24098 0.99689 1.01478 0.75151 1.22783 0.95824 0.93893 0.84783 1.45701 1.24645 1.61975 1.00799 1.18931 1.07101 1.29276 0.79636 0.90244 1.24808 0.97440 1.00007 0.98186 1.69816 1.13205 1.39297 1.34286 0.86174 0.77056 0.77574 0.84787 1.21158 1.21540 1.21086 1.22909 0.93688 0.96218 0.88689 1.22173 1.01795 0.93021 0.85484 1.21458 0.98296 0.75183 0.81889 1.93020 1.90799 1.36842 1.96559 1.92976 1.91207 1.81030 1.53049 0.90717 0.90277 0.90910 0.91089 0.90113 0.90464 0.76069 0.87671 0.87890 0.87610 0.92649 0.91095 0.93563 0.93994 0.94271 0.89502 0.91008 0.86647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.70 8.13 37.16 0.30 -0.40 16 2 C -0.14 -0.76 0.58 -155.66 -0.09 -0.85 16 3 C -0.14 -0.43 8.25 37.16 0.31 -0.13 16 4 C 0.53 4.25 6.36 -10.98 -0.07 4.18 16 5 O -0.52 -6.33 15.15 5.56 0.08 -6.25 16 6 N -0.71 -4.38 4.97 -52.22 -0.26 -4.64 16 7 C 0.13 1.18 3.43 -66.30 -0.23 0.95 16 8 H 0.11 1.11 7.72 -51.93 -0.40 0.71 16 9 C -0.17 -1.94 6.59 -26.74 -0.18 -2.11 16 10 C 0.52 8.55 7.42 -10.86 -0.08 8.47 16 11 O -0.51 -11.20 14.61 5.55 0.08 -11.12 16 12 N -0.61 -8.93 3.16 -166.64 -0.53 -9.45 16 13 C 0.10 1.83 4.81 -70.15 -0.34 1.49 16 14 C 0.15 3.80 6.90 -2.84 -0.02 3.78 16 15 N -0.60 -16.24 3.70 -177.91 -0.66 -16.90 16 16 C -0.22 -6.44 10.70 -15.06 -0.16 -6.60 16 17 H 0.08 2.20 7.83 -52.49 -0.41 1.79 16 18 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 19 N -0.92 -28.17 11.39 55.49 0.63 -27.54 16 20 Si 0.91 22.67 29.55 -169.99 -5.02 17.65 16 21 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 22 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 23 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 24 C 0.11 2.40 8.43 -2.97 -0.03 2.38 16 25 C 0.10 0.89 7.07 -3.12 -0.02 0.87 16 26 C 0.29 2.11 3.79 37.16 0.14 2.25 16 27 F -0.19 -2.03 15.90 2.25 0.04 -1.99 16 28 F -0.20 -1.52 16.30 2.25 0.04 -1.48 16 29 H 0.07 0.22 7.56 -51.93 -0.39 -0.18 16 30 H 0.08 0.33 7.80 -51.93 -0.41 -0.07 16 31 H 0.07 0.46 7.80 -51.93 -0.41 0.06 16 32 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 33 H 0.08 0.21 7.80 -51.93 -0.41 -0.19 16 34 H 0.08 0.11 7.56 -51.93 -0.39 -0.28 16 35 H 0.40 1.31 7.20 -40.82 -0.29 1.01 16 36 H 0.10 1.31 8.14 -51.93 -0.42 0.88 16 37 H 0.10 1.05 8.08 -51.93 -0.42 0.63 16 38 H 0.11 1.76 8.14 -51.93 -0.42 1.33 16 39 H 0.06 1.53 5.75 -51.93 -0.30 1.23 16 40 H 0.07 1.90 7.16 -51.93 -0.37 1.53 16 41 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 42 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 43 H 0.04 0.90 7.22 -51.93 -0.37 0.52 16 44 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.07 0.47 7.77 -51.93 -0.40 0.07 16 46 H 0.12 0.70 8.10 -51.93 -0.42 0.28 16 LS Contribution 378.39 15.07 5.70 5.70 Total: -1.00 -37.86 378.39 -7.10 -44.96 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: -6.64 Total: -2.90 kcal Atomic # 6 Polarization: 14.52 SS G_CDS: -0.56 Total: 13.96 kcal Atomic # 7 Polarization: -57.72 SS G_CDS: -0.81 Total: -58.53 kcal Atomic # 8 Polarization: -17.53 SS G_CDS: 0.17 Total: -17.36 kcal Atomic # 9 Polarization: -3.55 SS G_CDS: 0.07 Total: -3.48 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.65 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -37.86 -7.10 -44.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108572407.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.732 kcal (2) G-P(sol) polarization free energy of solvation -37.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds