Wall clock time and date at job start Wed Apr 1 2020 03:12:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00339 * 2 1 3 5 5 O 1.21279 * 120.00072 * 119.99863 * 4 2 1 6 6 N 1.34777 * 119.99762 * 300.00068 * 4 2 1 7 7 C 1.46496 * 120.00258 * 180.02562 * 6 4 2 8 8 H 1.09003 * 115.51613 * 350.57692 * 7 6 4 9 9 C 1.52996 * 117.44630 * 205.15881 * 7 6 4 10 10 H 1.09001 * 119.52254 * 4.09664 * 9 7 6 11 11 C 1.54382 * 118.12639 * 159.12715 * 9 7 6 12 12 N 1.48559 * 104.59433 * 87.23645 * 11 9 7 13 13 C 1.46898 * 110.99965 * 200.95979 * 12 11 9 14 14 C 1.50702 * 109.47352 * 169.99600 * 13 12 11 15 15 O 1.21288 * 119.99634 * 359.97438 * 14 13 12 16 16 N 1.34773 * 120.00102 * 180.02562 * 14 13 12 17 17 C 1.37094 * 120.00077 * 180.02562 * 16 14 13 18 18 H 1.08005 * 119.99889 * 359.97438 * 17 16 14 19 19 C 1.38952 * 120.00069 * 179.97438 * 17 16 14 20 20 N 1.31413 * 119.99967 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 120.00159 * 359.97438 * 19 17 16 22 22 H 1.48504 * 109.47446 * 89.99832 * 21 19 17 23 23 H 1.48500 * 109.47310 * 210.00275 * 21 19 17 24 24 H 1.48499 * 109.46827 * 330.00004 * 21 19 17 25 25 C 1.48561 * 104.21677 * 320.51103 * 12 11 9 26 26 C 1.52998 * 117.44716 * 136.00074 * 7 6 4 27 27 H 1.08997 * 119.52435 * 355.90598 * 26 7 6 28 28 C 1.52999 * 109.47317 * 239.99858 * 2 1 3 29 29 F 1.39905 * 109.47109 * 60.00092 * 28 2 1 30 30 F 1.39895 * 109.47493 * 179.97438 * 28 2 1 31 31 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 32 32 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 33 33 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 35 35 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 36 36 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 37 37 H 0.96999 * 120.00047 * 359.97438 * 6 4 2 38 38 H 1.09010 * 110.40669 * 206.01165 * 11 9 7 39 39 H 1.08996 * 110.41735 * 328.44799 * 11 9 7 40 40 H 1.09000 * 109.47254 * 289.99683 * 13 12 11 41 41 H 1.09000 * 109.47479 * 49.99056 * 13 12 11 42 42 H 0.97001 * 120.00096 * 359.97438 * 16 14 13 43 43 H 0.96998 * 120.00312 * 179.97438 * 20 19 17 44 44 H 1.09002 * 110.40987 * 158.26644 * 25 12 11 45 45 H 1.08997 * 110.41534 * 280.70375 * 25 12 11 46 46 H 1.09001 * 109.47362 * 300.00732 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 1.2305 5 8 2.7296 -1.6966 1.1191 6 7 1.7067 -0.2501 2.4546 7 6 2.1955 -0.9403 3.6507 8 1 2.6784 -1.9014 3.4739 9 6 1.3800 -0.7869 4.9361 10 1 0.4397 -0.2361 4.9131 11 6 1.5614 -1.8467 6.0439 12 7 2.7079 -1.3535 6.8497 13 6 3.3218 -2.4464 7.6157 14 6 4.6164 -1.9694 8.2220 15 8 4.9910 -0.8312 8.0341 16 7 5.3584 -2.8079 8.9722 17 6 6.5358 -2.3739 9.5242 18 1 6.8690 -1.3601 9.3576 19 6 7.3006 -3.2382 10.2981 20 7 8.4295 -2.8223 10.8268 21 14 6.7240 -4.9913 10.5869 22 1 7.2608 -5.8715 9.5180 23 1 7.2130 -5.4620 11.9077 24 1 5.2398 -5.0342 10.5646 25 6 3.6557 -0.8117 5.8422 26 6 2.7400 -0.0767 4.7903 27 1 2.8123 1.0029 4.6587 28 6 2.0400 -0.7213 -1.2492 29 9 1.5737 -0.0618 -2.3915 30 9 3.4390 -0.7208 -1.2495 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 1.6768 1.9562 0.8900 35 1 3.1300 1.4424 0.0005 36 1 1.6767 1.9563 -0.8900 37 1 1.1494 0.5388 2.5436 38 1 0.6639 -1.9108 6.6593 39 1 1.7937 -2.8178 5.6068 40 1 2.6431 -2.7602 8.4087 41 1 3.5197 -3.2885 6.9525 42 1 5.0590 -3.7183 9.1222 43 1 8.9632 -3.4255 11.3674 44 1 4.3352 -0.0964 6.3056 45 1 4.2158 -1.6207 5.3734 46 1 1.6766 -1.7489 -1.2493 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001114816683.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:12:57 Heat of formation + Delta-G solvation = -125.318739 kcal Electronic energy + Delta-G solvation = -30287.294740 eV Core-core repulsion = 25656.095680 eV Total energy + Delta-G solvation = -4631.199060 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.33902 -47.27441 -40.78717 -39.68732 -38.17300 -35.82916 -35.30027 -33.97100 -32.54042 -31.68513 -28.23607 -28.11401 -27.77600 -26.81319 -24.87559 -23.74014 -22.00933 -21.15731 -20.39485 -20.06089 -19.39399 -18.36685 -18.19663 -17.62521 -17.47445 -16.62452 -16.40359 -15.87653 -15.39862 -15.20694 -15.12638 -14.80578 -14.68541 -14.08948 -13.91029 -13.72702 -13.63339 -13.56733 -13.37653 -13.26500 -12.99956 -12.88269 -12.82998 -12.62347 -12.53742 -12.37848 -12.07680 -11.92699 -11.90267 -11.45914 -11.34808 -11.16375 -11.10484 -10.98793 -10.60688 -10.26390 -10.13800 -9.99417 -9.57950 -9.07101 -8.56065 -8.23303 -8.10854 -6.33194 -3.84782 2.05010 2.37857 3.01453 3.05790 3.14174 3.19445 3.50966 3.68938 3.72367 3.82424 3.91653 4.00515 4.08786 4.27842 4.42720 4.55263 4.59002 4.66524 4.72504 4.80057 4.89307 5.01742 5.03120 5.05695 5.11670 5.16195 5.19576 5.39006 5.44539 5.54236 5.57149 5.60267 5.63454 5.74358 5.86190 5.95337 5.99759 6.18936 6.52539 6.95927 7.00384 7.09044 7.55376 7.68665 8.11889 8.56802 8.92458 9.39496 9.78990 10.79697 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.020822 B = 0.001952 C = 0.001889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.382707 B =14344.254605 C =14819.914510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.134 4.134 3 C -0.147 4.147 4 C 0.532 3.468 5 O -0.523 6.523 6 N -0.691 5.691 7 C 0.098 3.902 8 H 0.135 0.865 9 C -0.169 4.169 10 H 0.117 0.883 11 C 0.060 3.940 12 N -0.487 5.487 13 C 0.031 3.969 14 C 0.450 3.550 15 O -0.563 6.563 16 N -0.587 5.587 17 C -0.305 4.305 18 H 0.120 0.880 19 C 0.042 3.958 20 N -0.880 5.880 21 Si 0.879 3.121 22 H -0.271 1.271 23 H -0.276 1.276 24 H -0.269 1.269 25 C 0.065 3.935 26 C -0.159 4.159 27 H 0.122 0.878 28 C 0.286 3.714 29 F -0.201 7.201 30 F -0.190 7.190 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.403 0.597 38 H 0.088 0.912 39 H 0.046 0.954 40 H 0.094 0.906 41 H 0.052 0.948 42 H 0.371 0.629 43 H 0.274 0.726 44 H 0.122 0.878 45 H 0.043 0.957 46 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.077 3.665 -21.774 30.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.139 4.139 3 C -0.204 4.204 4 C 0.317 3.683 5 O -0.398 6.398 6 N -0.340 5.340 7 C -0.008 4.008 8 H 0.152 0.848 9 C -0.189 4.189 10 H 0.135 0.865 11 C -0.068 4.068 12 N -0.211 5.211 13 C -0.101 4.101 14 C 0.236 3.764 15 O -0.445 6.445 16 N -0.226 5.226 17 C -0.434 4.434 18 H 0.138 0.862 19 C -0.162 4.162 20 N -0.519 5.519 21 Si 0.706 3.294 22 H -0.196 1.196 23 H -0.201 1.201 24 H -0.195 1.195 25 C -0.062 4.062 26 C -0.180 4.180 27 H 0.140 0.860 28 C 0.232 3.768 29 F -0.182 7.182 30 F -0.171 7.171 31 H 0.100 0.900 32 H 0.094 0.906 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.098 0.902 37 H 0.238 0.762 38 H 0.106 0.894 39 H 0.064 0.936 40 H 0.112 0.888 41 H 0.070 0.930 42 H 0.203 0.797 43 H 0.084 0.916 44 H 0.140 0.860 45 H 0.061 0.939 46 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -20.238 4.074 -21.466 29.782 hybrid contribution -0.341 -1.613 -0.127 1.654 sum -20.579 2.461 -21.594 29.931 Atomic orbital electron populations 1.21877 0.89954 1.03862 1.04407 1.21892 0.99724 0.98969 0.93274 1.21890 1.02894 0.91602 1.04062 1.19918 0.80034 0.84314 0.84019 1.90792 1.36719 1.25890 1.86395 1.45159 1.52927 1.31495 1.04444 1.21909 1.00830 0.98216 0.79808 0.84781 1.23769 0.96696 1.02511 0.95942 0.86505 1.22693 0.96168 0.95074 0.92833 1.65386 1.06386 1.28065 1.21264 1.22140 0.96461 0.92857 0.98629 1.19574 0.85967 0.86799 0.84060 1.90491 1.72434 1.18898 1.62700 1.42189 1.21538 1.12348 1.46564 1.19427 0.95308 1.01246 1.27389 0.86208 1.25049 0.95763 0.98468 0.96873 1.69619 1.12816 1.36295 1.33207 0.86675 0.78852 0.84855 0.79044 1.19617 1.20122 1.19453 1.23465 0.93882 0.99347 0.89506 1.24793 0.95927 0.99178 0.98089 0.85977 1.21445 0.76349 0.97143 0.81844 1.92976 1.88391 1.83854 1.53014 1.93023 1.30054 1.97520 1.96549 0.90039 0.90594 0.91123 0.90808 0.90822 0.90218 0.76241 0.89412 0.93589 0.88786 0.93030 0.79651 0.91568 0.85981 0.93872 0.86659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.56 8.25 37.16 0.31 -0.25 16 2 C -0.13 -0.90 0.58 -155.66 -0.09 -0.99 16 3 C -0.15 -0.85 8.13 37.15 0.30 -0.55 16 4 C 0.53 5.15 6.36 -10.98 -0.07 5.08 16 5 O -0.52 -7.30 14.97 5.56 0.08 -7.22 16 6 N -0.69 -5.58 5.35 -53.81 -0.29 -5.87 16 7 C 0.10 1.04 5.93 -67.94 -0.40 0.63 16 8 H 0.13 1.71 7.40 -51.93 -0.38 1.32 16 9 C -0.17 -1.69 6.97 -89.31 -0.62 -2.31 16 10 H 0.12 0.93 8.14 -51.93 -0.42 0.50 16 11 C 0.06 0.70 6.30 -2.18 -0.01 0.68 16 12 N -0.49 -7.61 5.34 -229.19 -1.22 -8.83 16 13 C 0.03 0.51 5.55 -4.98 -0.03 0.48 16 14 C 0.45 10.06 7.50 -10.99 -0.08 9.98 16 15 O -0.56 -14.57 13.24 5.55 0.07 -14.49 16 16 N -0.59 -13.87 5.09 -10.96 -0.06 -13.93 16 17 C -0.31 -8.56 10.16 -14.93 -0.15 -8.71 16 18 H 0.12 3.84 7.39 -52.48 -0.39 3.45 16 19 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 20 N -0.88 -25.62 13.96 55.50 0.77 -24.84 16 21 Si 0.88 19.30 27.74 -169.99 -4.71 14.59 16 22 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 23 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 24 H -0.27 -5.37 6.52 56.52 0.37 -5.00 16 25 C 0.07 1.05 5.17 -0.37 0.00 1.05 16 26 C -0.16 -1.90 7.32 -87.50 -0.64 -2.54 16 27 H 0.12 1.32 8.14 -51.93 -0.42 0.90 16 28 C 0.29 2.37 3.79 37.16 0.14 2.52 16 29 F -0.20 -1.64 16.30 2.25 0.04 -1.61 16 30 F -0.19 -2.22 15.90 2.25 0.04 -2.18 16 31 H 0.08 0.26 7.80 -51.93 -0.41 -0.14 16 32 H 0.08 0.19 7.56 -51.93 -0.39 -0.21 16 33 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.07 0.29 7.56 -51.93 -0.39 -0.10 16 35 H 0.07 0.55 7.80 -51.93 -0.41 0.15 16 36 H 0.08 0.39 7.80 -51.93 -0.41 -0.01 16 37 H 0.40 2.06 7.66 -40.82 -0.31 1.75 16 38 H 0.09 0.89 8.14 -51.92 -0.42 0.47 16 39 H 0.05 0.51 7.82 -51.93 -0.41 0.11 16 40 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 41 H 0.05 0.76 7.88 -51.93 -0.41 0.35 16 42 H 0.37 7.70 5.76 -40.82 -0.24 7.46 16 43 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 44 H 0.12 2.38 6.05 -51.93 -0.31 2.07 16 45 H 0.04 0.72 8.00 -51.93 -0.42 0.30 16 46 H 0.12 0.80 8.10 -51.93 -0.42 0.38 16 LS Contribution 379.72 15.07 5.72 5.72 Total: -1.00 -34.55 379.72 -7.57 -42.12 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: -6.57 Total: 10.44 kcal Atomic # 6 Polarization: 7.56 SS G_CDS: -1.45 Total: 6.11 kcal Atomic # 7 Polarization: -52.69 SS G_CDS: -0.79 Total: -53.48 kcal Atomic # 8 Polarization: -21.87 SS G_CDS: 0.16 Total: -21.71 kcal Atomic # 9 Polarization: -3.86 SS G_CDS: 0.07 Total: -3.79 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -4.71 Total: 14.59 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.55 -7.57 -42.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114816683.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.195 kcal (2) G-P(sol) polarization free energy of solvation -34.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds