Wall clock time and date at job start Wed Apr 1 2020 03:12:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00339 * 2 1 3 5 5 O 1.21279 * 120.00072 * 119.99863 * 4 2 1 6 6 N 1.34777 * 119.99762 * 300.00068 * 4 2 1 7 7 C 1.46496 * 120.00258 * 180.02562 * 6 4 2 8 8 H 1.09003 * 115.51613 * 350.57692 * 7 6 4 9 9 C 1.52996 * 117.44630 * 205.15881 * 7 6 4 10 10 H 1.09001 * 119.52254 * 4.09664 * 9 7 6 11 11 C 1.54382 * 118.12639 * 159.12715 * 9 7 6 12 12 N 1.48559 * 104.59433 * 87.23645 * 11 9 7 13 13 C 1.46898 * 110.99965 * 200.95979 * 12 11 9 14 14 C 1.50702 * 109.47352 * 169.99600 * 13 12 11 15 15 O 1.21288 * 119.99634 * 359.97438 * 14 13 12 16 16 N 1.34773 * 120.00102 * 180.02562 * 14 13 12 17 17 C 1.37094 * 120.00077 * 180.02562 * 16 14 13 18 18 H 1.08005 * 119.99889 * 359.97438 * 17 16 14 19 19 C 1.38952 * 120.00069 * 179.97438 * 17 16 14 20 20 N 1.31413 * 119.99967 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 120.00159 * 359.97438 * 19 17 16 22 22 H 1.48504 * 109.47446 * 89.99832 * 21 19 17 23 23 H 1.48500 * 109.47310 * 210.00275 * 21 19 17 24 24 H 1.48499 * 109.46827 * 330.00004 * 21 19 17 25 25 C 1.48561 * 104.21677 * 320.51103 * 12 11 9 26 26 C 1.52998 * 117.44716 * 136.00074 * 7 6 4 27 27 H 1.08997 * 119.52435 * 355.90598 * 26 7 6 28 28 C 1.52999 * 109.47317 * 239.99858 * 2 1 3 29 29 F 1.39905 * 109.47109 * 60.00092 * 28 2 1 30 30 F 1.39895 * 109.47493 * 179.97438 * 28 2 1 31 31 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 32 32 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 33 33 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 35 35 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 36 36 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 37 37 H 0.96999 * 120.00047 * 359.97438 * 6 4 2 38 38 H 1.09010 * 110.40669 * 206.01165 * 11 9 7 39 39 H 1.08996 * 110.41735 * 328.44799 * 11 9 7 40 40 H 1.09000 * 109.47254 * 289.99683 * 13 12 11 41 41 H 1.09000 * 109.47479 * 49.99056 * 13 12 11 42 42 H 0.97001 * 120.00096 * 359.97438 * 16 14 13 43 43 H 0.96998 * 120.00312 * 179.97438 * 20 19 17 44 44 H 1.09002 * 110.40987 * 158.26644 * 25 12 11 45 45 H 1.08997 * 110.41534 * 280.70375 * 25 12 11 46 46 H 1.09001 * 109.47362 * 300.00732 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 1.2305 5 8 2.7296 -1.6966 1.1191 6 7 1.7067 -0.2501 2.4546 7 6 2.1955 -0.9403 3.6507 8 1 2.6784 -1.9014 3.4739 9 6 1.3800 -0.7869 4.9361 10 1 0.4397 -0.2361 4.9131 11 6 1.5614 -1.8467 6.0439 12 7 2.7079 -1.3535 6.8497 13 6 3.3218 -2.4464 7.6157 14 6 4.6164 -1.9694 8.2220 15 8 4.9910 -0.8312 8.0341 16 7 5.3584 -2.8079 8.9722 17 6 6.5358 -2.3739 9.5242 18 1 6.8690 -1.3601 9.3576 19 6 7.3006 -3.2382 10.2981 20 7 8.4295 -2.8223 10.8268 21 14 6.7240 -4.9913 10.5869 22 1 7.2608 -5.8715 9.5180 23 1 7.2130 -5.4620 11.9077 24 1 5.2398 -5.0342 10.5646 25 6 3.6557 -0.8117 5.8422 26 6 2.7400 -0.0767 4.7903 27 1 2.8123 1.0029 4.6587 28 6 2.0400 -0.7213 -1.2492 29 9 1.5737 -0.0618 -2.3915 30 9 3.4390 -0.7208 -1.2495 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 1.6768 1.9562 0.8900 35 1 3.1300 1.4424 0.0005 36 1 1.6767 1.9563 -0.8900 37 1 1.1494 0.5388 2.5436 38 1 0.6639 -1.9108 6.6593 39 1 1.7937 -2.8178 5.6068 40 1 2.6431 -2.7602 8.4087 41 1 3.5197 -3.2885 6.9525 42 1 5.0590 -3.7183 9.1222 43 1 8.9632 -3.4255 11.3674 44 1 4.3352 -0.0964 6.3056 45 1 4.2158 -1.6207 5.3734 46 1 1.6766 -1.7489 -1.2493 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001114816683.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:12:56 Heat of formation + Delta-G solvation = -152.959948 kcal Electronic energy + Delta-G solvation = -30288.493353 eV Core-core repulsion = 25656.095680 eV Total energy + Delta-G solvation = -4632.397672 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.03524 -47.99836 -41.65839 -40.81858 -39.74740 -36.50668 -36.43650 -35.80576 -33.82586 -33.44134 -29.36002 -29.14324 -28.48898 -27.34580 -26.52742 -24.77111 -23.07243 -22.09730 -21.41684 -21.23643 -20.76913 -20.13622 -18.99893 -18.31051 -18.22783 -17.67893 -17.38651 -17.10655 -16.82764 -16.36849 -16.20778 -16.10928 -15.59431 -15.27280 -14.97862 -14.88281 -14.75206 -14.42685 -14.36615 -14.35519 -14.08933 -13.93076 -13.71511 -13.43609 -13.29283 -13.21030 -13.16023 -13.13624 -12.98607 -12.54232 -12.45437 -12.36818 -12.32029 -12.00792 -11.95676 -11.72255 -11.50848 -11.14953 -10.97406 -10.32688 -10.25240 -9.87083 -9.41802 -8.42955 -6.03847 1.28761 1.30572 1.33996 1.43067 1.64937 1.91657 2.21427 2.55627 2.62798 2.74900 3.07237 3.12943 3.18307 3.29806 3.40010 3.61355 3.65786 3.75944 3.78852 4.02670 4.04827 4.12831 4.15055 4.25620 4.34135 4.47349 4.52082 4.59804 4.60059 4.66894 4.72530 4.75621 4.79193 4.96678 5.10639 5.11804 5.18413 5.20813 5.36097 5.51046 5.78188 5.87142 6.00993 6.30326 6.57073 6.86248 7.00603 7.36687 7.93500 8.74527 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.020822 B = 0.001952 C = 0.001889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.382707 B =14344.254605 C =14819.914510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.124 4.124 3 C -0.148 4.148 4 C 0.530 3.470 5 O -0.572 6.572 6 N -0.674 5.674 7 C 0.105 3.895 8 H 0.111 0.889 9 C -0.139 4.139 10 H 0.152 0.848 11 C 0.057 3.943 12 N -0.504 5.504 13 C 0.041 3.959 14 C 0.448 3.552 15 O -0.606 6.606 16 N -0.590 5.590 17 C -0.327 4.327 18 H 0.056 0.944 19 C -0.016 4.016 20 N -0.933 5.933 21 Si 0.964 3.036 22 H -0.259 1.259 23 H -0.274 1.274 24 H -0.230 1.230 25 C 0.064 3.936 26 C -0.173 4.173 27 H 0.133 0.867 28 C 0.276 3.724 29 F -0.200 7.200 30 F -0.215 7.215 31 H 0.092 0.908 32 H 0.097 0.903 33 H 0.072 0.928 34 H 0.097 0.903 35 H 0.049 0.951 36 H 0.091 0.909 37 H 0.421 0.579 38 H 0.114 0.886 39 H 0.055 0.945 40 H 0.127 0.873 41 H 0.078 0.922 42 H 0.389 0.611 43 H 0.279 0.721 44 H 0.075 0.925 45 H 0.025 0.975 46 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.680 2.171 -22.492 34.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.128 4.128 3 C -0.205 4.205 4 C 0.317 3.683 5 O -0.450 6.450 6 N -0.324 5.324 7 C -0.002 4.002 8 H 0.129 0.871 9 C -0.159 4.159 10 H 0.170 0.830 11 C -0.070 4.070 12 N -0.229 5.229 13 C -0.090 4.090 14 C 0.236 3.764 15 O -0.490 6.490 16 N -0.232 5.232 17 C -0.456 4.456 18 H 0.074 0.926 19 C -0.215 4.215 20 N -0.574 5.574 21 Si 0.784 3.216 22 H -0.184 1.184 23 H -0.199 1.199 24 H -0.153 1.153 25 C -0.064 4.064 26 C -0.193 4.193 27 H 0.150 0.850 28 C 0.222 3.778 29 F -0.181 7.181 30 F -0.196 7.196 31 H 0.111 0.889 32 H 0.116 0.884 33 H 0.091 0.909 34 H 0.115 0.885 35 H 0.068 0.932 36 H 0.109 0.891 37 H 0.260 0.740 38 H 0.132 0.868 39 H 0.073 0.927 40 H 0.145 0.855 41 H 0.095 0.905 42 H 0.225 0.775 43 H 0.089 0.911 44 H 0.094 0.906 45 H 0.044 0.956 46 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -24.902 2.619 -22.199 33.463 hybrid contribution 1.141 -1.001 0.029 1.518 sum -23.762 1.617 -22.169 32.538 Atomic orbital electron populations 1.21951 0.87144 1.04618 1.06091 1.21859 1.01691 0.98572 0.90663 1.21944 1.01477 0.91253 1.05838 1.20461 0.79102 0.83711 0.85051 1.90777 1.38936 1.28228 1.87092 1.44983 1.52472 1.31727 1.03263 1.21614 1.00896 0.97021 0.80674 0.87129 1.23888 0.96719 1.00986 0.94297 0.83019 1.22857 0.95147 0.95756 0.93220 1.65376 1.07093 1.28404 1.21980 1.22100 0.93405 0.93598 0.99887 1.20839 0.87294 0.85983 0.82327 1.90501 1.73856 1.21091 1.63539 1.42023 1.20531 1.13480 1.47132 1.18990 0.97908 0.99290 1.29438 0.92601 1.26127 0.95317 1.04433 0.95597 1.69802 1.14597 1.38825 1.34183 0.85375 0.80647 0.76605 0.78978 1.18383 1.19892 1.15276 1.23194 0.94455 0.98170 0.90605 1.24591 0.96664 0.99552 0.98541 0.84956 1.21786 0.75112 0.98225 0.82682 1.92971 1.88187 1.83890 1.53061 1.92973 1.32246 1.97660 1.96716 0.88922 0.88377 0.90877 0.88464 0.93165 0.89064 0.74037 0.86795 0.92730 0.85525 0.90464 0.77497 0.91130 0.90636 0.95634 0.85618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.61 8.25 71.98 0.59 -0.01 16 2 C -0.12 -1.43 0.58 -52.93 -0.03 -1.46 16 3 C -0.15 -1.42 8.13 71.98 0.58 -0.83 16 4 C 0.53 9.54 6.36 87.66 0.56 10.10 16 5 O -0.57 -16.03 14.97 -3.03 -0.05 -16.08 16 6 N -0.67 -9.20 5.35 -442.54 -2.37 -11.57 16 7 C 0.10 2.02 5.93 44.99 0.27 2.28 16 8 H 0.11 2.76 7.40 -2.39 -0.02 2.74 16 9 C -0.14 -2.27 6.97 -9.95 -0.07 -2.34 16 10 H 0.15 1.51 8.14 -2.39 -0.02 1.49 16 11 C 0.06 1.11 6.30 86.45 0.54 1.65 16 12 N -0.50 -14.97 5.34 -879.03 -4.69 -19.66 16 13 C 0.04 1.28 5.55 85.56 0.47 1.76 16 14 C 0.45 20.35 7.50 87.66 0.66 21.01 16 15 O -0.61 -33.29 13.24 -3.05 -0.04 -33.33 16 16 N -0.59 -28.08 5.09 -306.99 -1.56 -29.64 16 17 C -0.33 -19.30 10.16 84.04 0.85 -18.45 16 18 H 0.06 3.92 7.39 -2.91 -0.02 3.90 16 19 C -0.02 -0.90 5.50 84.93 0.47 -0.43 16 20 N -0.93 -56.74 13.96 21.66 0.30 -56.44 16 21 Si 0.96 39.10 27.74 68.60 1.90 41.00 16 22 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 23 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 24 H -0.23 -7.79 6.52 99.48 0.65 -7.14 16 25 C 0.06 2.10 5.17 87.62 0.45 2.56 16 26 C -0.17 -3.94 7.32 -8.77 -0.06 -4.00 16 27 H 0.13 2.70 8.14 -2.39 -0.02 2.68 16 28 C 0.28 4.38 3.79 71.98 0.27 4.65 16 29 F -0.20 -3.03 16.30 44.97 0.73 -2.29 16 30 F -0.21 -5.14 15.90 44.97 0.72 -4.43 16 31 H 0.09 0.26 7.80 -2.39 -0.02 0.24 16 32 H 0.10 0.01 7.56 -2.39 -0.02 -0.01 16 33 H 0.07 0.32 8.14 -2.38 -0.02 0.30 16 34 H 0.10 0.45 7.56 -2.39 -0.02 0.43 16 35 H 0.05 0.73 7.80 -2.39 -0.02 0.71 16 36 H 0.09 0.69 7.80 -2.39 -0.02 0.67 16 37 H 0.42 2.63 7.66 -92.71 -0.71 1.92 16 38 H 0.11 1.70 8.14 -2.38 -0.02 1.68 16 39 H 0.05 1.00 7.82 -2.39 -0.02 0.99 16 40 H 0.13 3.16 8.14 -2.39 -0.02 3.15 16 41 H 0.08 2.04 7.88 -2.39 -0.02 2.02 16 42 H 0.39 15.33 5.76 -92.71 -0.53 14.80 16 43 H 0.28 15.50 8.31 -92.71 -0.77 14.73 16 44 H 0.08 3.19 6.05 -2.39 -0.01 3.17 16 45 H 0.03 0.90 8.00 -2.39 -0.02 0.88 16 46 H 0.13 1.68 8.10 -2.39 -0.02 1.66 16 Total: -1.00 -84.80 379.72 0.24 -84.56 By element: Atomic # 1 Polarization: 31.65 SS G_CDS: -0.27 Total: 31.38 kcal Atomic # 6 Polarization: 10.93 SS G_CDS: 5.56 Total: 16.49 kcal Atomic # 7 Polarization: -108.99 SS G_CDS: -8.32 Total: -117.30 kcal Atomic # 8 Polarization: -49.33 SS G_CDS: -0.09 Total: -49.41 kcal Atomic # 9 Polarization: -8.17 SS G_CDS: 1.45 Total: -6.72 kcal Atomic # 14 Polarization: 39.10 SS G_CDS: 1.90 Total: 41.00 kcal Total: -84.80 0.24 -84.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114816683.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.400 kcal (2) G-P(sol) polarization free energy of solvation -84.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds