Wall clock time and date at job start Wed Apr 1 2020 04:32:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 F 1.39905 * 109.47057 * 2 1 4 4 F 1.39900 * 109.47435 * 119.99807 * 2 1 3 5 5 C 1.50703 * 109.47084 * 240.00021 * 2 1 3 6 6 O 1.21273 * 119.99921 * 334.99670 * 5 2 1 7 7 N 1.34778 * 119.99935 * 154.99755 * 5 2 1 8 8 C 1.46499 * 119.99771 * 179.97438 * 7 5 2 9 9 C 1.53952 * 113.57855 * 252.72006 * 8 7 5 10 10 C 1.52914 * 86.78095 * 220.66520 * 9 8 7 11 11 C 1.52904 * 121.13549 * 150.62363 * 10 9 8 12 12 C 1.53945 * 86.78788 * 100.81794 * 11 10 9 13 13 N 1.46896 * 113.58405 * 139.33387 * 12 11 10 14 14 C 1.46891 * 111.00062 * 107.28143 * 13 12 11 15 15 C 1.50704 * 109.47487 * 180.02562 * 14 13 12 16 16 O 1.21294 * 119.99595 * 359.97438 * 15 14 13 17 17 N 1.34770 * 120.00207 * 180.02562 * 15 14 13 18 18 C 1.37099 * 120.00017 * 179.97438 * 17 15 14 19 19 H 1.08004 * 120.00059 * 359.97438 * 18 17 15 20 20 C 1.38949 * 120.00062 * 179.97438 * 18 17 15 21 21 N 1.31412 * 119.99983 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99799 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47136 * 90.00397 * 22 20 18 24 24 H 1.48506 * 109.46780 * 210.00077 * 22 20 18 25 25 H 1.48491 * 109.47169 * 330.00304 * 22 20 18 26 26 C 1.52913 * 121.13558 * 259.18015 * 10 9 8 27 27 C 1.52905 * 88.04298 * 24.89989 * 10 9 8 28 28 H 1.09001 * 109.47375 * 59.99937 * 1 2 3 29 29 H 1.09002 * 109.47045 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47140 * 299.99920 * 1 2 3 31 31 H 0.96998 * 120.00172 * 0.02562 * 7 5 2 32 32 H 1.08996 * 112.82461 * 23.91597 * 8 7 5 33 33 H 1.08995 * 113.66425 * 335.13711 * 9 8 7 34 34 H 1.08996 * 113.66235 * 106.19394 * 9 8 7 35 35 H 1.09004 * 113.66131 * 215.29436 * 11 10 9 36 36 H 1.09004 * 113.66285 * 346.34231 * 11 10 9 37 37 H 1.08999 * 113.64937 * 270.11981 * 12 11 10 38 38 H 1.00903 * 111.00351 * 231.23857 * 13 12 11 39 39 H 1.08999 * 109.47643 * 300.00607 * 14 13 12 40 40 H 1.09008 * 109.47388 * 60.00543 * 14 13 12 41 41 H 0.96999 * 120.00527 * 359.97438 * 17 15 14 42 42 H 0.97002 * 119.99990 * 180.02562 * 21 20 18 43 43 H 1.09001 * 113.65806 * 13.65533 * 26 10 9 44 44 H 1.09003 * 113.66138 * 144.70718 * 26 10 9 45 45 H 1.09002 * 113.66761 * 220.62734 * 27 10 9 46 46 H 1.09001 * 113.66071 * 89.56875 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9964 -0.6594 1.1423 5 6 2.0323 -0.7104 -1.2305 6 8 1.3370 -1.5393 -1.7784 7 7 3.2543 -0.4245 -1.7220 8 6 3.7428 -1.1156 -2.9178 9 6 4.8432 -2.1514 -2.6242 10 6 5.5357 -1.6472 -3.8908 11 6 7.0573 -1.6977 -4.0334 12 6 6.8482 -2.9573 -4.8934 13 7 7.7275 -3.0192 -6.0685 14 6 8.7773 -4.0306 -5.8877 15 6 9.6580 -4.0648 -7.1102 16 8 9.4328 -3.3201 -8.0407 17 7 10.6950 -4.9234 -7.1699 18 6 11.4958 -4.9548 -8.2822 19 1 11.2954 -4.2917 -9.1109 20 6 12.5654 -5.8397 -8.3436 21 7 12.8090 -6.6469 -7.3356 22 14 13.6560 -5.8829 -9.8595 23 1 14.7789 -4.9263 -9.6889 24 1 14.1970 -7.2540 -10.0411 25 1 12.8592 -5.5030 -11.0536 26 6 5.4393 -2.4211 -5.2061 27 6 4.8031 -0.3188 -3.6996 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 3.8105 0.2382 -1.2836 32 1 2.9368 -1.4992 -3.5434 33 1 5.4016 -1.9493 -1.7102 34 1 4.5017 -3.1841 -2.6939 35 1 7.4731 -0.8549 -4.5857 36 1 7.5785 -1.8898 -3.0955 37 1 6.8446 -3.8834 -4.3187 38 1 7.1968 -3.1951 -6.9085 39 1 9.3785 -3.7783 -5.0142 40 1 8.3185 -5.0087 -5.7427 41 1 10.8749 -5.5192 -6.4259 42 1 13.5559 -7.2644 -7.3782 43 1 4.6679 -3.1912 -5.2050 44 1 5.4003 -1.7817 -6.0880 45 1 4.4295 0.1125 -4.6283 46 1 5.3503 0.3984 -3.0878 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001120518350.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:02 Heat of formation + Delta-G solvation = -127.895964 kcal Electronic energy + Delta-G solvation = -29215.335270 eV Core-core repulsion = 24584.024453 eV Total energy + Delta-G solvation = -4631.310816 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.76712 -47.76331 -41.13976 -39.79262 -38.21584 -36.57800 -34.30570 -33.74697 -32.27172 -31.80808 -31.15744 -26.86456 -26.23274 -25.88995 -25.82473 -24.09263 -22.74650 -21.28331 -20.67828 -19.34245 -19.10994 -18.34706 -18.11400 -17.83800 -17.37928 -16.52139 -16.22349 -15.74670 -15.54672 -15.44405 -15.13811 -15.01019 -14.57311 -14.47959 -14.07883 -14.00404 -13.93641 -13.72833 -13.25399 -13.20726 -13.06367 -12.98986 -12.94813 -12.76734 -12.55607 -12.25326 -12.16050 -11.82916 -11.56327 -11.40351 -11.09881 -11.03690 -10.78858 -10.45023 -10.39045 -10.34482 -10.22242 -10.12065 -9.63671 -9.50316 -8.42933 -8.05143 -7.94965 -6.41119 -3.81947 1.57285 2.06967 3.14351 3.18348 3.26824 3.32748 3.37885 3.86524 3.91970 3.93866 4.03550 4.06095 4.18859 4.26132 4.36579 4.52298 4.63935 4.81282 4.82890 4.95416 5.01606 5.20470 5.24293 5.26595 5.28576 5.32228 5.40150 5.51204 5.57061 5.61694 5.72197 5.77868 5.83462 5.92263 5.98073 6.03238 6.20718 6.26115 6.37005 6.68872 7.28779 7.31422 7.55715 7.69276 8.07226 8.62130 9.18578 9.55295 10.06821 10.76633 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.041659 B = 0.001439 C = 0.001427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.959463 B =19454.406363 C =19611.833830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.280 3.720 3 F -0.189 7.189 4 F -0.181 7.181 5 C 0.486 3.514 6 O -0.502 6.502 7 N -0.699 5.699 8 C 0.118 3.882 9 C -0.125 4.125 10 C -0.103 4.103 11 C -0.107 4.107 12 C 0.062 3.938 13 N -0.656 5.656 14 C 0.050 3.950 15 C 0.441 3.559 16 O -0.584 6.584 17 N -0.564 5.564 18 C -0.300 4.300 19 H 0.103 0.897 20 C 0.022 3.978 21 N -0.902 5.902 22 Si 0.930 3.070 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.270 1.270 26 C -0.118 4.118 27 C -0.127 4.127 28 H 0.094 0.906 29 H 0.102 0.898 30 H 0.091 0.909 31 H 0.408 0.592 32 H 0.119 0.881 33 H 0.089 0.911 34 H 0.076 0.924 35 H 0.094 0.906 36 H 0.064 0.936 37 H 0.070 0.930 38 H 0.350 0.650 39 H 0.085 0.915 40 H 0.043 0.957 41 H 0.392 0.608 42 H 0.271 0.729 43 H 0.068 0.932 44 H 0.095 0.905 45 H 0.080 0.920 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.956 12.495 17.519 31.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.240 3.760 3 F -0.170 7.170 4 F -0.162 7.162 5 C 0.267 3.733 6 O -0.376 6.376 7 N -0.350 5.350 8 C 0.014 3.986 9 C -0.164 4.164 10 C -0.104 4.104 11 C -0.146 4.146 12 C -0.049 4.049 13 N -0.289 5.289 14 C -0.083 4.083 15 C 0.226 3.774 16 O -0.468 6.468 17 N -0.201 5.201 18 C -0.429 4.429 19 H 0.121 0.879 20 C -0.179 4.179 21 N -0.543 5.543 22 Si 0.757 3.243 23 H -0.204 1.204 24 H -0.209 1.209 25 H -0.194 1.194 26 C -0.155 4.155 27 C -0.165 4.165 28 H 0.113 0.887 29 H 0.120 0.880 30 H 0.110 0.890 31 H 0.244 0.756 32 H 0.137 0.863 33 H 0.108 0.892 34 H 0.095 0.905 35 H 0.113 0.887 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.170 0.830 39 H 0.103 0.897 40 H 0.061 0.939 41 H 0.225 0.775 42 H 0.081 0.919 43 H 0.087 0.913 44 H 0.113 0.887 45 H 0.098 0.902 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -23.031 12.763 16.713 31.188 hybrid contribution 0.724 -0.916 0.139 1.175 sum -22.307 11.848 16.852 30.364 Atomic orbital electron populations 1.22647 0.88721 1.06908 1.05821 1.21404 0.96021 0.75589 0.82950 1.93070 1.90469 1.36801 1.96682 1.93104 1.90496 1.80743 1.51882 1.20778 0.82878 0.83908 0.85729 1.90795 1.56007 1.32152 1.58629 1.46080 1.16559 1.42619 1.29708 1.22813 0.95709 0.94237 0.85803 1.23194 0.96160 0.99511 0.97513 1.22055 0.96869 0.95974 0.95528 1.22894 0.93034 0.99127 0.99512 1.22997 0.91575 0.97188 0.93118 1.60232 1.14347 1.50138 1.04159 1.21729 0.94431 0.93460 0.98660 1.19843 0.84143 0.84334 0.89063 1.90519 1.73232 1.43692 1.39377 1.41869 1.25572 1.34076 1.18568 1.19711 1.07145 1.19683 0.96399 0.87928 1.25261 0.98055 0.95959 0.98664 1.69614 1.30616 1.23008 1.31105 0.85855 0.79833 0.77329 0.81249 1.20395 1.20948 1.19435 1.22989 0.96866 0.99269 0.96425 1.23186 0.95897 0.96868 1.00567 0.88732 0.87967 0.89021 0.75597 0.86290 0.89216 0.90541 0.88726 0.91732 0.91203 0.82983 0.89700 0.93936 0.77472 0.91892 0.91322 0.88657 0.90167 0.89182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.90 8.92 37.16 0.33 -0.56 16 2 C 0.28 1.93 2.47 -27.88 -0.07 1.86 16 3 F -0.19 -1.28 16.51 2.25 0.04 -1.24 16 4 F -0.18 -1.47 17.05 2.25 0.04 -1.43 16 5 C 0.49 4.10 7.23 -10.98 -0.08 4.02 16 6 O -0.50 -5.64 15.70 5.56 0.09 -5.55 16 7 N -0.70 -4.82 5.29 -52.85 -0.28 -5.10 16 8 C 0.12 0.88 4.24 -66.95 -0.28 0.59 16 9 C -0.13 -0.97 7.64 -26.28 -0.20 -1.17 16 10 C -0.10 -0.86 1.11 -154.71 -0.17 -1.03 16 11 C -0.11 -1.12 7.64 -26.29 -0.20 -1.32 16 12 C 0.06 0.73 4.14 -66.73 -0.28 0.45 16 13 N -0.66 -10.40 6.18 -106.96 -0.66 -11.06 16 14 C 0.05 0.88 6.01 -4.98 -0.03 0.85 16 15 C 0.44 10.46 7.82 -10.99 -0.09 10.37 16 16 O -0.58 -15.93 15.78 5.55 0.09 -15.84 16 17 N -0.56 -14.39 5.29 -10.96 -0.06 -14.45 16 18 C -0.30 -8.42 9.68 -14.93 -0.14 -8.56 16 19 H 0.10 3.02 7.16 -52.48 -0.38 2.64 16 20 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 21 N -0.90 -24.62 13.05 55.50 0.72 -23.89 16 22 Si 0.93 21.11 29.55 -169.99 -5.02 16.08 16 23 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 24 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 25 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 26 C -0.12 -1.14 7.41 -26.28 -0.19 -1.33 16 27 C -0.13 -0.87 7.59 -26.28 -0.20 -1.07 16 28 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.10 0.53 7.87 -51.93 -0.41 0.12 16 30 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.41 2.06 8.28 -40.82 -0.34 1.72 16 32 H 0.12 1.03 7.46 -51.93 -0.39 0.64 16 33 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.81 7.86 -51.93 -0.41 0.40 16 38 H 0.35 5.73 8.25 -39.29 -0.32 5.41 16 39 H 0.08 1.41 8.14 -51.93 -0.42 0.98 16 40 H 0.04 0.68 8.13 -51.92 -0.42 0.26 16 41 H 0.39 9.56 7.90 -40.82 -0.32 9.23 16 42 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 43 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.09 0.53 8.12 -51.93 -0.42 0.11 16 LS Contribution 393.87 15.07 5.94 5.94 Total: -1.00 -32.57 393.87 -7.58 -40.15 By element: Atomic # 1 Polarization: 19.58 SS G_CDS: -6.77 Total: 12.81 kcal Atomic # 6 Polarization: 5.29 SS G_CDS: -1.70 Total: 3.59 kcal Atomic # 7 Polarization: -54.23 SS G_CDS: -0.27 Total: -54.51 kcal Atomic # 8 Polarization: -21.56 SS G_CDS: 0.17 Total: -21.39 kcal Atomic # 9 Polarization: -2.75 SS G_CDS: 0.08 Total: -2.68 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.57 -7.58 -40.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120518350.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.741 kcal (2) G-P(sol) polarization free energy of solvation -32.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds