Wall clock time and date at job start Wed Apr 1 2020 04:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 F 1.39905 * 109.47057 * 2 1 4 4 F 1.39900 * 109.47435 * 119.99807 * 2 1 3 5 5 C 1.50703 * 109.47084 * 240.00021 * 2 1 3 6 6 O 1.21273 * 119.99921 * 334.99670 * 5 2 1 7 7 N 1.34778 * 119.99935 * 154.99755 * 5 2 1 8 8 C 1.46499 * 119.99771 * 179.97438 * 7 5 2 9 9 C 1.53952 * 113.57855 * 252.72006 * 8 7 5 10 10 C 1.52914 * 86.78095 * 220.66520 * 9 8 7 11 11 C 1.52904 * 121.13549 * 150.62363 * 10 9 8 12 12 C 1.53945 * 86.78788 * 100.81794 * 11 10 9 13 13 N 1.46896 * 113.58405 * 139.33387 * 12 11 10 14 14 C 1.46891 * 111.00062 * 107.28143 * 13 12 11 15 15 C 1.50704 * 109.47487 * 180.02562 * 14 13 12 16 16 O 1.21294 * 119.99595 * 359.97438 * 15 14 13 17 17 N 1.34770 * 120.00207 * 180.02562 * 15 14 13 18 18 C 1.37099 * 120.00017 * 179.97438 * 17 15 14 19 19 H 1.08004 * 120.00059 * 359.97438 * 18 17 15 20 20 C 1.38949 * 120.00062 * 179.97438 * 18 17 15 21 21 N 1.31412 * 119.99983 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99799 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47136 * 90.00397 * 22 20 18 24 24 H 1.48506 * 109.46780 * 210.00077 * 22 20 18 25 25 H 1.48491 * 109.47169 * 330.00304 * 22 20 18 26 26 C 1.52913 * 121.13558 * 259.18015 * 10 9 8 27 27 C 1.52905 * 88.04298 * 24.89989 * 10 9 8 28 28 H 1.09001 * 109.47375 * 59.99937 * 1 2 3 29 29 H 1.09002 * 109.47045 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47140 * 299.99920 * 1 2 3 31 31 H 0.96998 * 120.00172 * 0.02562 * 7 5 2 32 32 H 1.08996 * 112.82461 * 23.91597 * 8 7 5 33 33 H 1.08995 * 113.66425 * 335.13711 * 9 8 7 34 34 H 1.08996 * 113.66235 * 106.19394 * 9 8 7 35 35 H 1.09004 * 113.66131 * 215.29436 * 11 10 9 36 36 H 1.09004 * 113.66285 * 346.34231 * 11 10 9 37 37 H 1.08999 * 113.64937 * 270.11981 * 12 11 10 38 38 H 1.00903 * 111.00351 * 231.23857 * 13 12 11 39 39 H 1.08999 * 109.47643 * 300.00607 * 14 13 12 40 40 H 1.09008 * 109.47388 * 60.00543 * 14 13 12 41 41 H 0.96999 * 120.00527 * 359.97438 * 17 15 14 42 42 H 0.97002 * 119.99990 * 180.02562 * 21 20 18 43 43 H 1.09001 * 113.65806 * 13.65533 * 26 10 9 44 44 H 1.09003 * 113.66138 * 144.70718 * 26 10 9 45 45 H 1.09002 * 113.66761 * 220.62734 * 27 10 9 46 46 H 1.09001 * 113.66071 * 89.56875 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9964 -0.6594 1.1423 5 6 2.0323 -0.7104 -1.2305 6 8 1.3370 -1.5393 -1.7784 7 7 3.2543 -0.4245 -1.7220 8 6 3.7428 -1.1156 -2.9178 9 6 4.8432 -2.1514 -2.6242 10 6 5.5357 -1.6472 -3.8908 11 6 7.0573 -1.6977 -4.0334 12 6 6.8482 -2.9573 -4.8934 13 7 7.7275 -3.0192 -6.0685 14 6 8.7773 -4.0306 -5.8877 15 6 9.6580 -4.0648 -7.1102 16 8 9.4328 -3.3201 -8.0407 17 7 10.6950 -4.9234 -7.1699 18 6 11.4958 -4.9548 -8.2822 19 1 11.2954 -4.2917 -9.1109 20 6 12.5654 -5.8397 -8.3436 21 7 12.8090 -6.6469 -7.3356 22 14 13.6560 -5.8829 -9.8595 23 1 14.7789 -4.9263 -9.6889 24 1 14.1970 -7.2540 -10.0411 25 1 12.8592 -5.5030 -11.0536 26 6 5.4393 -2.4211 -5.2061 27 6 4.8031 -0.3188 -3.6996 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 3.8105 0.2382 -1.2836 32 1 2.9368 -1.4992 -3.5434 33 1 5.4016 -1.9493 -1.7102 34 1 4.5017 -3.1841 -2.6939 35 1 7.4731 -0.8549 -4.5857 36 1 7.5785 -1.8898 -3.0955 37 1 6.8446 -3.8834 -4.3187 38 1 7.1968 -3.1951 -6.9085 39 1 9.3785 -3.7783 -5.0142 40 1 8.3185 -5.0087 -5.7427 41 1 10.8749 -5.5192 -6.4259 42 1 13.5559 -7.2644 -7.3782 43 1 4.6679 -3.1912 -5.2050 44 1 5.4003 -1.7817 -6.0880 45 1 4.4295 0.1125 -4.6283 46 1 5.3503 0.3984 -3.0878 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001120518350.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:01 Heat of formation + Delta-G solvation = -151.361757 kcal Electronic energy + Delta-G solvation = -29216.352823 eV Core-core repulsion = 24584.024453 eV Total energy + Delta-G solvation = -4632.328370 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.32401 -48.32294 -41.84806 -40.55623 -40.03526 -37.50859 -36.01502 -34.99871 -33.33612 -32.98193 -32.41626 -28.36389 -26.83651 -26.79239 -26.56623 -25.73896 -23.51577 -21.91204 -21.52824 -21.11300 -19.94593 -19.78232 -18.90574 -18.77543 -17.99244 -17.78491 -17.10143 -16.83847 -16.64879 -16.37472 -16.33886 -16.06049 -15.78999 -15.64190 -15.22791 -15.14454 -14.63826 -14.55866 -14.46017 -14.09024 -13.91890 -13.70767 -13.55692 -13.50353 -13.40194 -13.35556 -13.12857 -13.08207 -12.98738 -12.82889 -12.43050 -12.38259 -12.12378 -11.89731 -11.59887 -11.50986 -11.14288 -11.07891 -10.90326 -10.32661 -10.25799 -10.02168 -9.29927 -8.47080 -5.96099 0.92789 1.38058 1.41791 1.49228 1.54666 2.04709 2.29210 2.60331 2.88696 2.95256 3.20198 3.36077 3.37938 3.42689 3.46333 3.59788 3.60378 3.74876 3.89471 4.00810 4.29320 4.34196 4.41010 4.48269 4.50174 4.56588 4.58586 4.73741 4.76666 4.84763 4.89683 4.96443 4.97082 4.99849 5.02272 5.13721 5.34819 5.40267 5.43187 5.48710 5.93934 6.10341 6.19224 6.43983 6.59706 6.71181 7.11993 7.55628 8.10874 8.70280 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.041659 B = 0.001439 C = 0.001427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.959463 B =19454.406363 C =19611.833830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.283 3.717 3 F -0.187 7.187 4 F -0.189 7.189 5 C 0.483 3.517 6 O -0.534 6.534 7 N -0.690 5.690 8 C 0.120 3.880 9 C -0.121 4.121 10 C -0.094 4.094 11 C -0.106 4.106 12 C 0.053 3.947 13 N -0.669 5.669 14 C 0.065 3.935 15 C 0.437 3.563 16 O -0.624 6.624 17 N -0.573 5.573 18 C -0.336 4.336 19 H 0.079 0.921 20 C -0.012 4.012 21 N -0.920 5.920 22 Si 0.994 3.006 23 H -0.271 1.271 24 H -0.270 1.270 25 H -0.273 1.273 26 C -0.113 4.113 27 C -0.118 4.118 28 H 0.101 0.899 29 H 0.097 0.903 30 H 0.109 0.891 31 H 0.419 0.581 32 H 0.107 0.893 33 H 0.099 0.901 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.344 0.656 39 H 0.100 0.900 40 H 0.064 0.936 41 H 0.396 0.604 42 H 0.278 0.722 43 H 0.076 0.924 44 H 0.090 0.910 45 H 0.082 0.918 46 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.332 12.972 18.694 32.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.244 3.756 3 F -0.168 7.168 4 F -0.170 7.170 5 C 0.265 3.735 6 O -0.411 6.411 7 N -0.340 5.340 8 C 0.016 3.984 9 C -0.160 4.160 10 C -0.095 4.095 11 C -0.144 4.144 12 C -0.056 4.056 13 N -0.302 5.302 14 C -0.067 4.067 15 C 0.225 3.775 16 O -0.510 6.510 17 N -0.210 5.210 18 C -0.466 4.466 19 H 0.097 0.903 20 C -0.212 4.212 21 N -0.561 5.561 22 Si 0.817 3.183 23 H -0.196 1.196 24 H -0.195 1.195 25 H -0.198 1.198 26 C -0.151 4.151 27 C -0.156 4.156 28 H 0.120 0.880 29 H 0.116 0.884 30 H 0.128 0.872 31 H 0.256 0.744 32 H 0.125 0.875 33 H 0.117 0.883 34 H 0.090 0.910 35 H 0.099 0.901 36 H 0.090 0.910 37 H 0.095 0.905 38 H 0.163 0.837 39 H 0.118 0.882 40 H 0.082 0.918 41 H 0.230 0.770 42 H 0.087 0.913 43 H 0.094 0.906 44 H 0.108 0.892 45 H 0.101 0.899 46 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -23.396 13.252 17.935 32.321 hybrid contribution 0.826 -1.038 -0.202 1.342 sum -22.570 12.213 17.733 31.194 Atomic orbital electron populations 1.22701 0.87147 1.07064 1.07103 1.21431 0.97016 0.75299 0.81902 1.93075 1.90575 1.36558 1.96614 1.93090 1.90710 1.80974 1.52198 1.21068 0.82909 0.83548 0.85993 1.90780 1.56921 1.33623 1.59734 1.46046 1.16259 1.42390 1.29353 1.22699 0.95399 0.94425 0.85916 1.23195 0.96029 0.99293 0.97438 1.21914 0.95421 0.97005 0.95133 1.22841 0.94550 0.97777 0.99224 1.23198 0.92190 0.98216 0.92002 1.60271 1.14931 1.49510 1.05449 1.21581 0.94198 0.95312 0.95627 1.20913 0.83728 0.82629 0.90263 1.90485 1.74126 1.44945 1.41464 1.41941 1.26101 1.34804 1.18197 1.19687 1.09020 1.20745 0.97106 0.90313 1.26047 0.98641 0.95031 1.01496 1.69674 1.31044 1.23043 1.32341 0.84917 0.77905 0.77951 0.77493 1.19629 1.19498 1.19763 1.22944 0.95638 0.99482 0.97048 1.23169 0.95231 0.96338 1.00831 0.88024 0.88377 0.87211 0.74360 0.87485 0.88265 0.91050 0.90060 0.91025 0.90454 0.83683 0.88153 0.91808 0.76998 0.91287 0.90574 0.89150 0.89940 0.87645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.53 8.92 71.98 0.64 -0.89 16 2 C 0.28 3.51 2.47 29.85 0.07 3.58 16 3 F -0.19 -2.20 16.51 44.97 0.74 -1.46 16 4 F -0.19 -2.83 17.05 44.97 0.77 -2.06 16 5 C 0.48 7.62 7.23 87.66 0.63 8.25 16 6 O -0.53 -11.73 15.70 -3.01 -0.05 -11.78 16 7 N -0.69 -8.38 5.29 -439.52 -2.32 -10.70 16 8 C 0.12 1.59 4.24 45.63 0.19 1.78 16 9 C -0.12 -1.64 7.64 30.89 0.24 -1.41 16 10 C -0.09 -1.40 1.11 -52.31 -0.06 -1.46 16 11 C -0.11 -2.04 7.64 30.88 0.24 -1.81 16 12 C 0.05 1.20 4.14 45.55 0.19 1.38 16 13 N -0.67 -20.87 6.18 -492.31 -3.04 -23.91 16 14 C 0.07 2.26 6.01 85.56 0.51 2.77 16 15 C 0.44 21.02 7.82 87.66 0.69 21.71 16 16 O -0.62 -34.90 15.78 -3.07 -0.05 -34.95 16 17 N -0.57 -29.73 5.29 -306.98 -1.62 -31.35 16 18 C -0.34 -19.27 9.68 84.04 0.81 -18.45 16 19 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 20 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 21 N -0.92 -49.83 13.05 21.66 0.28 -49.55 16 22 Si 0.99 43.06 29.55 68.60 2.03 45.09 16 23 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 24 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 25 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 26 C -0.11 -2.06 7.41 30.89 0.23 -1.83 16 27 C -0.12 -1.38 7.59 30.89 0.23 -1.14 16 28 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.10 0.93 7.87 -2.39 -0.02 0.91 16 30 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.42 3.32 8.28 -92.71 -0.77 2.56 16 32 H 0.11 1.75 7.46 -2.39 -0.02 1.74 16 33 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 36 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.08 1.64 7.86 -2.39 -0.02 1.63 16 38 H 0.34 11.30 8.25 -89.69 -0.74 10.56 16 39 H 0.10 3.18 8.14 -2.39 -0.02 3.16 16 40 H 0.06 1.95 8.13 -2.38 -0.02 1.93 16 41 H 0.40 19.49 7.90 -92.71 -0.73 18.76 16 42 H 0.28 14.06 8.31 -92.71 -0.77 13.29 16 43 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 45 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 46 H 0.11 0.95 8.12 -2.39 -0.02 0.93 16 Total: -1.00 -70.54 393.87 0.62 -69.92 By element: Atomic # 1 Polarization: 39.65 SS G_CDS: -1.20 Total: 38.45 kcal Atomic # 6 Polarization: 7.20 SS G_CDS: 5.09 Total: 12.29 kcal Atomic # 7 Polarization: -108.80 SS G_CDS: -6.71 Total: -115.51 kcal Atomic # 8 Polarization: -46.63 SS G_CDS: -0.10 Total: -46.73 kcal Atomic # 9 Polarization: -5.03 SS G_CDS: 1.51 Total: -3.52 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Total: -70.54 0.62 -69.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120518350.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.444 kcal (2) G-P(sol) polarization free energy of solvation -70.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds