Wall clock time and date at job start Wed Apr 1 2020 03:24:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 F 1.39899 * 109.47526 * 2 1 4 4 F 1.39900 * 109.47190 * 239.99822 * 2 1 3 5 5 C 1.52999 * 109.46932 * 120.00105 * 2 1 3 6 6 C 1.50707 * 109.47188 * 179.97438 * 5 2 1 7 7 O 1.21275 * 119.99748 * 359.97438 * 6 5 2 8 8 N 1.34779 * 119.99821 * 179.97438 * 6 5 2 9 9 C 1.47890 * 134.33985 * 180.02562 * 8 6 5 10 10 C 1.52386 * 85.59352 * 156.48652 * 9 8 6 11 11 C 1.47886 * 134.34474 * 359.97182 * 8 6 5 12 12 C 1.53637 * 116.37921 * 141.33966 * 10 9 8 13 13 C 1.54595 * 102.81370 * 95.34845 * 12 10 9 14 14 N 1.47557 * 107.32808 * 20.84134 * 13 12 10 15 15 C 1.46906 * 110.99755 * 123.21876 * 14 13 12 16 16 C 1.50699 * 109.47140 * 69.87674 * 15 14 13 17 17 O 1.21289 * 119.99678 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99614 * 180.02562 * 16 15 14 19 19 C 1.37097 * 119.99518 * 180.02562 * 18 16 15 20 20 H 1.08003 * 120.00058 * 359.97438 * 19 18 16 21 21 C 1.38949 * 120.00085 * 179.97438 * 19 18 16 22 22 N 1.31416 * 119.99807 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00409 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47268 * 90.00146 * 23 21 19 25 25 H 1.48500 * 109.47502 * 210.00166 * 23 21 19 26 26 H 1.48501 * 109.47054 * 330.00549 * 23 21 19 27 27 C 1.48139 * 108.68546 * 0.87288 * 14 13 12 28 28 H 1.09002 * 109.47182 * 300.00038 * 1 2 3 29 29 H 1.09009 * 109.47081 * 60.00074 * 1 2 3 30 30 H 1.09000 * 109.47197 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47333 * 59.99895 * 5 2 1 32 32 H 1.08999 * 109.47349 * 299.99484 * 5 2 1 33 33 H 1.09000 * 113.85537 * 42.31825 * 9 8 6 34 34 H 1.09002 * 113.96434 * 270.66536 * 9 8 6 35 35 H 1.08999 * 113.85743 * 89.34816 * 11 8 6 36 36 H 1.08999 * 113.85213 * 317.67871 * 11 8 6 37 37 H 1.09001 * 110.74629 * 337.01966 * 12 10 9 38 38 H 1.09000 * 110.74819 * 213.67876 * 12 10 9 39 39 H 1.08999 * 109.87377 * 261.41188 * 13 12 10 40 40 H 1.08997 * 109.99576 * 140.34369 * 13 12 10 41 41 H 1.09004 * 109.47040 * 189.87611 * 15 14 13 42 42 H 1.09000 * 109.47033 * 309.87564 * 15 14 13 43 43 H 0.96996 * 120.00269 * 359.97438 * 18 16 15 44 44 H 0.97002 * 120.00022 * 179.97438 * 22 21 19 45 45 H 1.08999 * 110.41105 * 96.34150 * 27 14 13 46 46 H 1.09008 * 110.40619 * 218.76786 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 9 1.9964 1.3189 0.0000 4 9 1.9963 -0.6595 -1.1423 5 6 2.0399 -0.7213 1.2492 6 6 3.5470 -0.7219 1.2490 7 8 4.1533 -0.1975 0.3390 8 7 4.2208 -1.3052 2.2601 9 6 5.6536 -1.4883 2.5774 10 6 5.1950 -1.6232 4.0243 11 6 3.8216 -2.0158 3.4940 12 6 5.9240 -2.6734 4.8764 13 6 7.0116 -1.8397 5.5918 14 7 6.5745 -0.4306 5.5638 15 6 6.4983 0.1241 6.9219 16 6 7.8894 0.2773 7.4808 17 8 8.8499 -0.0435 6.8131 18 7 8.0662 0.7708 8.7224 19 6 9.3318 0.9107 9.2306 20 1 10.1871 0.6250 8.6361 21 6 9.5142 1.4199 10.5105 22 7 8.4736 1.7679 11.2336 23 14 11.2385 1.6099 11.2033 24 1 11.7638 2.9562 10.8615 25 1 11.1989 1.4542 12.6795 26 1 12.1238 0.5703 10.6194 27 6 5.2601 -0.3548 4.8848 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 1.6765 -1.7489 1.2492 32 1 1.6766 -0.2074 2.1392 33 1 6.2633 -0.6047 2.3888 34 1 6.0853 -2.4002 2.1650 35 1 3.6908 -3.0898 3.3615 36 1 2.9935 -1.5462 4.0248 37 1 6.3767 -3.4371 4.2439 38 1 5.2441 -3.1232 5.6000 39 1 7.9620 -1.9432 5.0683 40 1 7.1188 -2.1739 6.6237 41 1 6.0104 1.0983 6.8897 42 1 5.9235 -0.5494 7.5577 43 1 7.2981 1.0277 9.2562 44 1 8.6009 2.1231 12.1273 45 1 4.4533 -0.3510 5.6178 46 1 5.2077 0.5341 4.2561 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001148226615.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:39 Heat of formation + Delta-G solvation = -124.346209 kcal Electronic energy + Delta-G solvation = -30328.949590 eV Core-core repulsion = 25697.792703 eV Total energy + Delta-G solvation = -4631.156888 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.14155 -47.12622 -41.19267 -39.06939 -38.11190 -36.37385 -33.87871 -33.68239 -31.76668 -31.14038 -29.79275 -28.66914 -27.43512 -26.58617 -25.31081 -24.01179 -22.31267 -21.23126 -20.00122 -19.19633 -18.82227 -17.91934 -17.84541 -17.57888 -17.11383 -16.19649 -16.15230 -15.98916 -15.85600 -15.19872 -14.90861 -14.61904 -14.48571 -14.02685 -13.91086 -13.81378 -13.55941 -13.47139 -13.41450 -13.18415 -13.06803 -12.92355 -12.65969 -12.56126 -12.51626 -12.20357 -11.95531 -11.84519 -11.48514 -11.41520 -11.38273 -11.17036 -11.05171 -10.91001 -10.60429 -10.39113 -10.21167 -10.00859 -9.48971 -9.01055 -8.45367 -7.96170 -7.90606 -6.41027 -3.81604 2.28333 2.37669 3.18359 3.26850 3.32492 3.35477 3.60300 3.76651 3.79653 3.92184 3.98230 4.15282 4.21762 4.30874 4.42436 4.63044 4.65444 4.75435 4.77103 4.95991 5.01507 5.04537 5.12090 5.24295 5.25963 5.26411 5.29870 5.34975 5.47673 5.53410 5.58468 5.60924 5.72318 5.76733 5.88313 5.90410 6.05250 6.29365 6.41035 7.20602 7.22246 7.35074 7.55922 7.81585 8.07213 8.62990 9.19341 9.55640 10.07762 10.76834 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.025182 B = 0.001856 C = 0.001812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.617439 B =15080.491140 C =15448.226205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.306 3.694 3 F -0.191 7.191 4 F -0.193 7.193 5 C -0.184 4.184 6 C 0.534 3.466 7 O -0.521 6.521 8 N -0.644 5.644 9 C 0.131 3.869 10 C -0.103 4.103 11 C 0.115 3.885 12 C -0.129 4.129 13 C 0.058 3.942 14 N -0.505 5.505 15 C 0.041 3.959 16 C 0.444 3.556 17 O -0.576 6.576 18 N -0.567 5.567 19 C -0.297 4.297 20 H 0.103 0.897 21 C 0.021 3.979 22 N -0.903 5.903 23 Si 0.930 3.070 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.270 1.270 27 C 0.068 3.932 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.121 0.879 32 H 0.122 0.878 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.079 0.921 38 H 0.073 0.927 39 H 0.084 0.916 40 H 0.057 0.943 41 H 0.087 0.913 42 H 0.049 0.951 43 H 0.391 0.609 44 H 0.271 0.729 45 H 0.052 0.948 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.611 -9.565 -15.246 27.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C 0.269 3.731 3 F -0.172 7.172 4 F -0.174 7.174 5 C -0.224 4.224 6 C 0.322 3.678 7 O -0.397 6.397 8 N -0.381 5.381 9 C 0.009 3.991 10 C -0.105 4.105 11 C -0.008 4.008 12 C -0.168 4.168 13 C -0.070 4.070 14 N -0.229 5.229 15 C -0.091 4.091 16 C 0.229 3.771 17 O -0.459 6.459 18 N -0.204 5.204 19 C -0.427 4.427 20 H 0.120 0.880 21 C -0.180 4.180 22 N -0.545 5.545 23 Si 0.757 3.243 24 H -0.204 1.204 25 H -0.210 1.210 26 H -0.195 1.195 27 C -0.059 4.059 28 H 0.109 0.891 29 H 0.104 0.896 30 H 0.108 0.892 31 H 0.139 0.861 32 H 0.140 0.860 33 H 0.110 0.890 34 H 0.106 0.894 35 H 0.110 0.890 36 H 0.104 0.896 37 H 0.098 0.902 38 H 0.092 0.908 39 H 0.102 0.898 40 H 0.076 0.924 41 H 0.105 0.895 42 H 0.067 0.933 43 H 0.224 0.776 44 H 0.081 0.919 45 H 0.070 0.930 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -19.342 -8.989 -16.462 26.943 hybrid contribution -0.257 -0.148 1.300 1.333 sum -19.600 -9.137 -15.162 26.411 Atomic orbital electron populations 1.22802 0.91138 1.05520 1.05785 1.20619 0.93076 0.76152 0.83232 1.93060 1.90554 1.36844 1.96752 1.93046 1.90594 1.80763 1.53017 1.22799 0.94913 1.04910 0.99826 1.19822 0.88754 0.78611 0.80637 1.90814 1.69844 1.44631 1.34368 1.50146 1.09440 1.55992 1.22490 1.22979 0.82704 1.02758 0.90641 1.22424 0.95291 0.97591 0.95159 1.23097 0.97635 0.97649 0.82461 1.22644 0.98193 0.97315 0.98691 1.22776 0.98030 0.85858 1.00326 1.63316 1.24259 1.18318 1.16959 1.22083 0.97303 1.00480 0.89184 1.19736 0.89870 0.84422 0.83064 1.90523 1.41769 1.54258 1.59348 1.41863 1.09171 1.56296 1.13060 1.19689 0.85116 1.39539 0.98317 0.87950 1.25253 0.99318 0.97152 0.96314 1.69613 1.29756 1.43729 1.11378 0.85862 0.81878 0.78852 0.77721 1.20415 1.20982 1.19454 1.22636 0.91050 0.96336 0.95927 0.89054 0.89558 0.89158 0.86114 0.85967 0.88956 0.89379 0.89007 0.89643 0.90246 0.90789 0.89784 0.92447 0.89484 0.93288 0.77564 0.91933 0.92961 0.89976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -0.86 9.38 37.15 0.35 -0.52 16 2 C 0.31 2.72 1.85 -26.74 -0.05 2.67 16 3 F -0.19 -2.35 16.15 2.25 0.04 -2.32 16 4 F -0.19 -2.29 16.14 2.25 0.04 -2.25 16 5 C -0.18 -1.28 5.04 -27.88 -0.14 -1.42 16 6 C 0.53 6.19 7.82 -10.98 -0.09 6.10 16 7 O -0.52 -8.62 15.56 5.56 0.09 -8.54 16 8 N -0.64 -6.27 3.62 -186.83 -0.68 -6.95 16 9 C 0.13 1.36 8.14 -3.59 -0.03 1.33 16 10 C -0.10 -0.94 0.99 -154.85 -0.15 -1.09 16 11 C 0.11 0.73 7.98 -3.60 -0.03 0.70 16 12 C -0.13 -1.20 6.35 -25.56 -0.16 -1.36 16 13 C 0.06 0.83 5.67 -2.63 -0.01 0.81 16 14 N -0.50 -7.89 4.86 -233.13 -1.13 -9.02 16 15 C 0.04 0.70 5.03 -4.97 -0.02 0.68 16 16 C 0.44 10.31 7.43 -10.99 -0.08 10.23 16 17 O -0.58 -15.41 15.12 5.55 0.08 -15.32 16 18 N -0.57 -14.21 5.29 -10.96 -0.06 -14.27 16 19 C -0.30 -8.24 9.68 -14.93 -0.14 -8.38 16 20 H 0.10 2.99 7.16 -52.48 -0.38 2.61 16 21 C 0.02 0.56 5.50 -17.47 -0.10 0.46 16 22 N -0.90 -24.43 13.05 55.50 0.72 -23.71 16 23 Si 0.93 21.03 29.55 -169.99 -5.02 16.01 16 24 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 26 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 27 C 0.07 0.79 6.09 -2.93 -0.02 0.77 16 28 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.09 0.39 8.14 -51.92 -0.42 -0.03 16 30 H 0.09 0.23 8.14 -51.93 -0.42 -0.20 16 31 H 0.12 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.12 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.09 1.17 8.12 -51.93 -0.42 0.75 16 34 H 0.09 0.80 8.04 -51.93 -0.42 0.38 16 35 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.09 0.39 8.12 -51.93 -0.42 -0.03 16 37 H 0.08 0.63 7.99 -51.93 -0.41 0.22 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 40 H 0.06 0.90 7.31 -51.93 -0.38 0.52 16 41 H 0.09 1.37 8.07 -51.93 -0.42 0.95 16 42 H 0.05 0.74 7.96 -51.93 -0.41 0.33 16 43 H 0.39 9.35 7.90 -40.82 -0.32 9.03 16 44 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 45 H 0.05 0.52 7.80 -51.93 -0.40 0.11 16 46 H 0.08 1.03 8.07 -51.92 -0.42 0.61 16 LS Contribution 387.59 15.07 5.84 5.84 Total: -1.00 -36.32 387.59 -7.69 -44.01 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -6.93 Total: 5.54 kcal Atomic # 6 Polarization: 11.65 SS G_CDS: -0.68 Total: 10.97 kcal Atomic # 7 Polarization: -52.81 SS G_CDS: -1.14 Total: -53.95 kcal Atomic # 8 Polarization: -24.03 SS G_CDS: 0.17 Total: -23.86 kcal Atomic # 9 Polarization: -4.64 SS G_CDS: 0.07 Total: -4.57 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -36.32 -7.69 -44.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148226615.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.336 kcal (2) G-P(sol) polarization free energy of solvation -36.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds