Wall clock time and date at job start Wed Apr 1 2020 02:51:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 F 1.39906 * 109.46808 * 2 1 4 4 F 1.39905 * 109.47211 * 240.00581 * 2 1 3 5 5 C 1.52993 * 109.47382 * 120.00309 * 2 1 3 6 6 C 1.50704 * 115.54707 * 293.62228 * 5 2 1 7 7 O 1.21285 * 119.99702 * 102.66683 * 6 5 2 8 8 N 1.34770 * 120.00636 * 282.66928 * 6 5 2 9 9 C 1.47426 * 125.64475 * 354.42410 * 8 6 5 10 10 C 1.54915 * 104.92843 * 155.79488 * 9 8 6 11 11 C 1.55444 * 101.44765 * 37.00851 * 10 9 8 12 12 H 1.09002 * 110.85918 * 82.95912 * 11 10 9 13 13 N 1.46896 * 110.70784 * 206.14343 * 11 10 9 14 14 C 1.46897 * 111.00087 * 268.54616 * 13 11 10 15 15 C 1.50697 * 109.47356 * 179.97438 * 14 13 11 16 16 O 1.21298 * 120.00077 * 0.02562 * 15 14 13 17 17 N 1.34781 * 120.00494 * 180.02562 * 15 14 13 18 18 C 1.37092 * 120.00088 * 180.02562 * 17 15 14 19 19 H 1.08002 * 120.00565 * 359.97438 * 18 17 15 20 20 C 1.38949 * 119.99833 * 179.97438 * 18 17 15 21 21 N 1.31420 * 120.00257 * 179.97438 * 20 18 17 22 22 Si 1.86805 * 120.00036 * 0.02562 * 20 18 17 23 23 H 1.48503 * 109.47371 * 89.99651 * 22 20 18 24 24 H 1.48503 * 109.47294 * 209.99658 * 22 20 18 25 25 H 1.48500 * 109.47002 * 329.99545 * 22 20 18 26 26 C 1.47024 * 125.65318 * 174.40657 * 8 6 5 27 27 C 1.53001 * 117.50224 * 79.29594 * 5 2 1 28 28 C 1.52997 * 117.50005 * 147.95806 * 5 2 1 29 29 H 1.08996 * 109.46818 * 295.86550 * 1 2 3 30 30 H 1.09000 * 109.47657 * 55.87113 * 1 2 3 31 31 H 1.09000 * 109.46789 * 175.86803 * 1 2 3 32 32 H 1.08995 * 110.37203 * 274.69347 * 9 8 6 33 33 H 1.09005 * 110.36736 * 36.90542 * 9 8 6 34 34 H 1.08997 * 111.00493 * 155.14009 * 10 9 8 35 35 H 1.09003 * 111.00523 * 278.99528 * 10 9 8 36 36 H 1.00901 * 110.99920 * 32.50457 * 13 11 10 37 37 H 1.08999 * 109.47199 * 299.99884 * 14 13 11 38 38 H 1.09002 * 109.47143 * 60.00415 * 14 13 11 39 39 H 0.97003 * 119.99264 * 359.97438 * 17 15 14 40 40 H 0.96995 * 119.99915 * 180.02562 * 21 20 18 41 41 H 1.09005 * 109.87950 * 300.49485 * 26 8 6 42 42 H 1.08999 * 109.88317 * 61.66065 * 26 8 6 43 43 H 1.08999 * 117.49760 * 215.00362 * 27 5 2 44 44 H 1.09003 * 117.49624 * 0.02562 * 27 5 2 45 45 H 1.08995 * 117.50065 * 359.97121 * 28 5 2 46 46 H 1.09007 * 117.50066 * 144.97033 * 28 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3191 0.0000 4 9 1.9964 -0.6594 -1.1424 5 6 2.0400 -0.7213 1.2491 6 6 1.7430 -0.0397 2.5600 7 8 0.8451 -0.4477 3.2658 8 7 2.4751 1.0233 2.9480 9 6 3.6619 1.5501 2.2498 10 6 3.7478 3.0372 2.6752 11 6 3.2939 2.9601 4.1599 12 1 4.1259 2.6799 4.8061 13 7 2.7101 4.2371 4.5917 14 6 3.7336 5.1120 5.1790 15 6 3.0990 6.4095 5.6085 16 8 1.9108 6.5878 5.4421 17 7 3.8516 7.3721 6.1774 18 6 3.2741 8.5523 6.5686 19 1 2.2161 8.7110 6.4205 20 6 4.0499 9.5443 7.1556 21 7 3.4965 10.6759 7.5302 22 14 5.8800 9.2701 7.4112 23 1 6.6231 9.7431 6.2156 24 1 6.3318 10.0271 8.6062 25 1 6.1399 7.8223 7.6149 26 6 2.2223 1.8498 4.1374 27 6 2.0379 -2.2512 1.2319 28 6 3.3601 -1.4861 1.1338 29 1 -0.3633 0.4483 0.9247 30 1 -0.3634 0.5766 -0.8506 31 1 -0.3633 -1.0250 -0.0740 32 1 4.5567 1.0132 2.5645 33 1 3.5331 1.4713 1.1703 34 1 4.7697 3.4079 2.5958 35 1 3.0643 3.6514 2.0890 36 1 2.2379 4.6956 3.8270 37 1 4.1784 4.6207 6.0444 38 1 4.5074 5.3141 4.4383 39 1 4.8018 7.2293 6.3108 40 1 4.0382 11.3685 7.9396 41 1 1.2290 2.2945 4.0754 42 1 2.3020 1.2393 5.0368 43 1 1.8217 -2.7647 2.1687 44 1 1.6736 -2.7438 0.3305 45 1 3.8650 -1.4758 0.1679 46 1 4.0140 -1.4960 2.0059 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185690450.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:51:49 Heat of formation + Delta-G solvation = -124.895465 kcal Electronic energy + Delta-G solvation = -30850.810916 eV Core-core repulsion = 26219.630211 eV Total energy + Delta-G solvation = -4631.180705 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.52686 -47.51810 -40.66618 -38.84845 -38.07209 -36.86833 -34.86394 -33.87340 -31.74614 -31.69658 -30.76459 -29.21839 -26.72152 -25.42662 -24.06383 -23.46947 -23.00965 -22.28998 -20.93239 -19.44111 -19.37531 -18.50221 -18.30653 -17.85388 -16.82182 -16.65388 -16.52443 -16.02404 -15.52765 -15.43267 -14.82960 -14.76844 -14.65062 -14.29738 -14.06106 -13.88608 -13.78481 -13.51115 -13.36234 -13.16643 -13.01485 -12.85565 -12.72263 -12.61154 -12.54807 -12.28548 -12.15717 -12.10816 -12.07267 -11.67382 -11.53309 -11.21974 -11.18098 -11.06389 -10.80974 -10.61836 -10.21994 -9.99499 -9.59750 -8.92714 -8.64583 -8.24416 -8.18630 -6.32900 -3.84575 2.03308 2.44381 2.85828 3.00528 3.04402 3.13305 3.15883 3.58942 3.70481 3.76490 3.92501 3.95193 4.00575 4.08257 4.30292 4.36820 4.42101 4.54357 4.76615 4.87112 4.91619 5.00975 5.03178 5.06568 5.11399 5.18853 5.19997 5.26617 5.36059 5.46485 5.47723 5.49532 5.56076 5.67696 5.73191 5.79185 5.81653 5.91758 5.98446 6.99444 7.14532 7.45244 7.55786 7.75968 8.12230 8.57266 8.92890 9.40013 9.79722 10.80161 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.025291 B = 0.002015 C = 0.002007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.865276 B =13893.856691 C =13947.892728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.335 3.665 3 F -0.187 7.187 4 F -0.193 7.193 5 C -0.217 4.217 6 C 0.571 3.429 7 O -0.524 6.524 8 N -0.605 5.605 9 C 0.090 3.910 10 C -0.165 4.165 11 C 0.080 3.920 12 H 0.094 0.906 13 N -0.658 5.658 14 C 0.049 3.951 15 C 0.449 3.551 16 O -0.564 6.564 17 N -0.590 5.590 18 C -0.305 4.305 19 H 0.120 0.880 20 C 0.041 3.959 21 N -0.881 5.881 22 Si 0.880 3.120 23 H -0.271 1.271 24 H -0.276 1.276 25 H -0.269 1.269 26 C 0.116 3.884 27 C -0.122 4.122 28 C -0.147 4.147 29 H 0.092 0.908 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.069 0.931 33 H 0.092 0.908 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.356 0.644 37 H 0.089 0.911 38 H 0.047 0.953 39 H 0.370 0.630 40 H 0.274 0.726 41 H 0.082 0.918 42 H 0.074 0.926 43 H 0.114 0.886 44 H 0.113 0.887 45 H 0.114 0.886 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.277 -26.478 -16.299 31.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C 0.298 3.702 3 F -0.168 7.168 4 F -0.173 7.173 5 C -0.221 4.221 6 C 0.357 3.643 7 O -0.400 6.400 8 N -0.339 5.339 9 C -0.033 4.033 10 C -0.205 4.205 11 C -0.032 4.032 12 H 0.113 0.887 13 N -0.290 5.290 14 C -0.083 4.083 15 C 0.234 3.766 16 O -0.446 6.446 17 N -0.229 5.229 18 C -0.434 4.434 19 H 0.137 0.863 20 C -0.162 4.162 21 N -0.520 5.520 22 Si 0.707 3.293 23 H -0.197 1.197 24 H -0.202 1.202 25 H -0.195 1.195 26 C -0.007 4.007 27 C -0.160 4.160 28 C -0.184 4.184 29 H 0.111 0.889 30 H 0.105 0.895 31 H 0.111 0.889 32 H 0.087 0.913 33 H 0.110 0.890 34 H 0.104 0.896 35 H 0.101 0.899 36 H 0.177 0.823 37 H 0.107 0.893 38 H 0.065 0.935 39 H 0.203 0.797 40 H 0.084 0.916 41 H 0.101 0.899 42 H 0.093 0.907 43 H 0.132 0.868 44 H 0.131 0.869 45 H 0.132 0.868 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 2.750 -26.602 -15.346 30.834 hybrid contribution 2.212 0.468 -0.602 2.340 sum 4.962 -26.134 -15.948 31.015 Atomic orbital electron populations 1.22730 0.90355 1.05910 1.05823 1.20039 0.94004 0.74972 0.81150 1.92977 1.90129 1.37176 1.96530 1.93015 1.90628 1.80984 1.52717 1.22337 1.08052 0.97457 0.94231 1.18484 0.81381 0.79209 0.85212 1.90749 1.31095 1.63597 1.54596 1.48320 1.29344 1.29061 1.27140 1.22576 0.87543 0.94097 0.99117 1.23618 1.03209 0.95827 0.97850 1.22667 0.95681 0.90833 0.94003 0.88739 1.59937 1.27797 1.03651 1.37605 1.21733 0.93332 0.93612 0.99651 1.19683 0.87728 0.85021 0.84148 1.90580 1.15141 1.80352 1.58506 1.42201 1.09432 1.15663 1.55629 1.19431 0.97692 0.89605 1.36665 0.86266 1.25052 0.98521 0.95388 0.97244 1.69624 1.36254 1.05623 1.40546 0.86664 0.85263 0.78411 0.78986 1.19666 1.20161 1.19473 1.21969 1.00349 0.91315 0.87027 1.23094 0.99151 0.88414 1.05293 1.23222 0.89880 1.00267 1.05059 0.88940 0.89541 0.88852 0.91280 0.88988 0.89558 0.89896 0.82307 0.89314 0.93488 0.79689 0.91590 0.89923 0.90727 0.86765 0.86899 0.86792 0.87310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.42 9.31 37.16 0.35 -1.08 16 2 C 0.33 2.85 2.07 -26.73 -0.06 2.79 16 3 F -0.19 -1.86 13.88 2.25 0.03 -1.83 16 4 F -0.19 -1.61 15.65 2.25 0.04 -1.58 16 5 C -0.22 -1.81 0.91 -155.66 -0.14 -1.95 16 6 C 0.57 6.48 6.19 -10.99 -0.07 6.41 16 7 O -0.52 -7.70 17.30 5.55 0.10 -7.61 16 8 N -0.61 -6.35 3.31 -170.51 -0.56 -6.91 16 9 C 0.09 0.74 6.04 -2.53 -0.02 0.72 16 10 C -0.17 -1.45 6.69 -24.42 -0.16 -1.61 16 11 C 0.08 0.85 3.28 -65.72 -0.22 0.63 16 12 H 0.09 0.89 7.82 -51.93 -0.41 0.49 16 13 N -0.66 -9.48 5.93 -105.90 -0.63 -10.11 16 14 C 0.05 0.76 6.03 -4.98 -0.03 0.73 16 15 C 0.45 9.90 7.82 -10.99 -0.09 9.82 16 16 O -0.56 -14.95 15.78 5.54 0.09 -14.86 16 17 N -0.59 -13.76 5.09 -10.96 -0.06 -13.82 16 18 C -0.31 -8.56 10.16 -14.94 -0.15 -8.71 16 19 H 0.12 3.84 7.39 -52.49 -0.39 3.45 16 20 C 0.04 1.11 5.50 -17.46 -0.10 1.02 16 21 N -0.88 -25.59 13.96 55.50 0.77 -24.82 16 22 Si 0.88 19.08 27.74 -169.99 -4.71 14.36 16 23 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 24 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 25 H -0.27 -5.28 6.52 56.52 0.37 -4.91 16 26 C 0.12 1.34 6.63 -3.06 -0.02 1.32 16 27 C -0.12 -0.78 9.60 -26.69 -0.26 -1.04 16 28 C -0.15 -0.89 9.17 -26.69 -0.24 -1.13 16 29 H 0.09 0.82 7.63 -51.93 -0.40 0.42 16 30 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.09 0.76 4.92 -51.93 -0.26 0.50 16 34 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.08 0.81 7.77 -51.93 -0.40 0.40 16 36 H 0.36 5.41 7.91 -39.29 -0.31 5.10 16 37 H 0.09 1.22 8.08 -51.93 -0.42 0.80 16 38 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.37 7.52 5.76 -40.82 -0.24 7.28 16 40 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 41 H 0.08 1.12 8.03 -51.93 -0.42 0.70 16 42 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.11 0.56 7.97 -51.93 -0.41 0.14 16 45 H 0.11 0.59 7.60 -51.93 -0.39 0.20 16 46 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 383.09 15.07 5.77 5.77 Total: -1.00 -34.25 383.09 -6.95 -41.21 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: -6.59 Total: 12.27 kcal Atomic # 6 Polarization: 9.11 SS G_CDS: -1.20 Total: 7.92 kcal Atomic # 7 Polarization: -55.18 SS G_CDS: -0.47 Total: -55.66 kcal Atomic # 8 Polarization: -22.65 SS G_CDS: 0.18 Total: -22.47 kcal Atomic # 9 Polarization: -3.47 SS G_CDS: 0.07 Total: -3.40 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -4.71 Total: 14.36 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.25 -6.95 -41.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185690450.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.689 kcal (2) G-P(sol) polarization free energy of solvation -34.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds