Wall clock time and date at job start Wed Apr 1 2020 02:51:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 F 1.39906 * 109.46808 * 2 1 4 4 F 1.39905 * 109.47211 * 240.00581 * 2 1 3 5 5 C 1.52993 * 109.47382 * 120.00309 * 2 1 3 6 6 C 1.50704 * 115.54707 * 293.62228 * 5 2 1 7 7 O 1.21285 * 119.99702 * 102.66683 * 6 5 2 8 8 N 1.34770 * 120.00636 * 282.66928 * 6 5 2 9 9 C 1.47426 * 125.64475 * 354.42410 * 8 6 5 10 10 C 1.54915 * 104.92843 * 155.79488 * 9 8 6 11 11 C 1.55444 * 101.44765 * 37.00851 * 10 9 8 12 12 H 1.09002 * 110.85918 * 82.95912 * 11 10 9 13 13 N 1.46896 * 110.70784 * 206.14343 * 11 10 9 14 14 C 1.46897 * 111.00087 * 268.54616 * 13 11 10 15 15 C 1.50697 * 109.47356 * 179.97438 * 14 13 11 16 16 O 1.21298 * 120.00077 * 0.02562 * 15 14 13 17 17 N 1.34781 * 120.00494 * 180.02562 * 15 14 13 18 18 C 1.37092 * 120.00088 * 180.02562 * 17 15 14 19 19 H 1.08002 * 120.00565 * 359.97438 * 18 17 15 20 20 C 1.38949 * 119.99833 * 179.97438 * 18 17 15 21 21 N 1.31420 * 120.00257 * 179.97438 * 20 18 17 22 22 Si 1.86805 * 120.00036 * 0.02562 * 20 18 17 23 23 H 1.48503 * 109.47371 * 89.99651 * 22 20 18 24 24 H 1.48503 * 109.47294 * 209.99658 * 22 20 18 25 25 H 1.48500 * 109.47002 * 329.99545 * 22 20 18 26 26 C 1.47024 * 125.65318 * 174.40657 * 8 6 5 27 27 C 1.53001 * 117.50224 * 79.29594 * 5 2 1 28 28 C 1.52997 * 117.50005 * 147.95806 * 5 2 1 29 29 H 1.08996 * 109.46818 * 295.86550 * 1 2 3 30 30 H 1.09000 * 109.47657 * 55.87113 * 1 2 3 31 31 H 1.09000 * 109.46789 * 175.86803 * 1 2 3 32 32 H 1.08995 * 110.37203 * 274.69347 * 9 8 6 33 33 H 1.09005 * 110.36736 * 36.90542 * 9 8 6 34 34 H 1.08997 * 111.00493 * 155.14009 * 10 9 8 35 35 H 1.09003 * 111.00523 * 278.99528 * 10 9 8 36 36 H 1.00901 * 110.99920 * 32.50457 * 13 11 10 37 37 H 1.08999 * 109.47199 * 299.99884 * 14 13 11 38 38 H 1.09002 * 109.47143 * 60.00415 * 14 13 11 39 39 H 0.97003 * 119.99264 * 359.97438 * 17 15 14 40 40 H 0.96995 * 119.99915 * 180.02562 * 21 20 18 41 41 H 1.09005 * 109.87950 * 300.49485 * 26 8 6 42 42 H 1.08999 * 109.88317 * 61.66065 * 26 8 6 43 43 H 1.08999 * 117.49760 * 215.00362 * 27 5 2 44 44 H 1.09003 * 117.49624 * 0.02562 * 27 5 2 45 45 H 1.08995 * 117.50065 * 359.97121 * 28 5 2 46 46 H 1.09007 * 117.50066 * 144.97033 * 28 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3191 0.0000 4 9 1.9964 -0.6594 -1.1424 5 6 2.0400 -0.7213 1.2491 6 6 1.7430 -0.0397 2.5600 7 8 0.8451 -0.4477 3.2658 8 7 2.4751 1.0233 2.9480 9 6 3.6619 1.5501 2.2498 10 6 3.7478 3.0372 2.6752 11 6 3.2939 2.9601 4.1599 12 1 4.1259 2.6799 4.8061 13 7 2.7101 4.2371 4.5917 14 6 3.7336 5.1120 5.1790 15 6 3.0990 6.4095 5.6085 16 8 1.9108 6.5878 5.4421 17 7 3.8516 7.3721 6.1774 18 6 3.2741 8.5523 6.5686 19 1 2.2161 8.7110 6.4205 20 6 4.0499 9.5443 7.1556 21 7 3.4965 10.6759 7.5302 22 14 5.8800 9.2701 7.4112 23 1 6.6231 9.7431 6.2156 24 1 6.3318 10.0271 8.6062 25 1 6.1399 7.8223 7.6149 26 6 2.2223 1.8498 4.1374 27 6 2.0379 -2.2512 1.2319 28 6 3.3601 -1.4861 1.1338 29 1 -0.3633 0.4483 0.9247 30 1 -0.3634 0.5766 -0.8506 31 1 -0.3633 -1.0250 -0.0740 32 1 4.5567 1.0132 2.5645 33 1 3.5331 1.4713 1.1703 34 1 4.7697 3.4079 2.5958 35 1 3.0643 3.6514 2.0890 36 1 2.2379 4.6956 3.8270 37 1 4.1784 4.6207 6.0444 38 1 4.5074 5.3141 4.4383 39 1 4.8018 7.2293 6.3108 40 1 4.0382 11.3685 7.9396 41 1 1.2290 2.2945 4.0754 42 1 2.3020 1.2393 5.0368 43 1 1.8217 -2.7647 2.1687 44 1 1.6736 -2.7438 0.3305 45 1 3.8650 -1.4758 0.1679 46 1 4.0140 -1.4960 2.0059 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185690450.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:51:49 Heat of formation + Delta-G solvation = -151.007589 kcal Electronic energy + Delta-G solvation = -30851.943223 eV Core-core repulsion = 26219.630211 eV Total energy + Delta-G solvation = -4632.313012 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.19886 -48.19516 -41.47720 -40.33994 -39.18379 -37.60719 -36.23270 -35.59025 -33.74168 -32.34174 -31.70413 -30.11940 -28.12449 -26.37940 -25.35256 -24.44324 -23.51517 -22.99569 -21.80326 -21.27870 -20.29289 -20.11895 -19.14105 -18.52306 -17.73144 -17.52187 -17.48967 -17.24826 -16.90165 -16.44797 -16.23980 -15.78421 -15.45975 -15.33237 -15.01340 -14.96945 -14.78063 -14.50174 -14.45505 -14.20949 -14.12048 -13.92337 -13.71765 -13.63397 -13.55210 -13.29682 -13.18198 -12.99205 -12.77576 -12.68683 -12.55415 -12.41929 -12.40346 -11.96771 -11.82301 -11.72466 -11.50331 -11.44364 -11.07470 -10.44673 -10.24427 -9.77858 -9.32999 -8.40431 -6.01792 1.21572 1.31510 1.37205 1.46448 1.67826 1.97003 2.24495 2.30070 2.52185 2.72219 2.96468 3.09800 3.16131 3.27509 3.34450 3.44622 3.59017 3.76601 3.80554 3.86820 4.05179 4.17497 4.25917 4.32082 4.39277 4.47549 4.51246 4.57178 4.58403 4.59959 4.67415 4.80469 4.81667 4.82469 4.87634 4.97222 5.03443 5.07353 5.18609 5.53575 5.90944 6.04378 6.30075 6.34092 6.60442 6.89077 6.91230 7.40624 7.97918 8.77319 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.025291 B = 0.002015 C = 0.002007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.865276 B =13893.856691 C =13947.892728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.335 3.665 3 F -0.198 7.198 4 F -0.189 7.189 5 C -0.232 4.232 6 C 0.567 3.433 7 O -0.569 6.569 8 N -0.605 5.605 9 C 0.090 3.910 10 C -0.158 4.158 11 C 0.088 3.912 12 H 0.120 0.880 13 N -0.680 5.680 14 C 0.066 3.934 15 C 0.446 3.554 16 O -0.618 6.618 17 N -0.590 5.590 18 C -0.329 4.329 19 H 0.053 0.947 20 C -0.018 4.018 21 N -0.936 5.936 22 Si 0.968 3.032 23 H -0.256 1.256 24 H -0.277 1.277 25 H -0.228 1.228 26 C 0.116 3.884 27 C -0.117 4.117 28 C -0.129 4.129 29 H 0.072 0.928 30 H 0.095 0.905 31 H 0.108 0.892 32 H 0.097 0.903 33 H 0.094 0.906 34 H 0.113 0.887 35 H 0.068 0.932 36 H 0.347 0.653 37 H 0.118 0.882 38 H 0.087 0.913 39 H 0.391 0.609 40 H 0.279 0.721 41 H 0.052 0.948 42 H 0.070 0.930 43 H 0.108 0.892 44 H 0.129 0.871 45 H 0.128 0.872 46 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.681 -29.031 -17.424 34.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C 0.298 3.702 3 F -0.179 7.179 4 F -0.170 7.170 5 C -0.236 4.236 6 C 0.355 3.645 7 O -0.448 6.448 8 N -0.337 5.337 9 C -0.031 4.031 10 C -0.197 4.197 11 C -0.023 4.023 12 H 0.138 0.862 13 N -0.312 5.312 14 C -0.066 4.066 15 C 0.234 3.766 16 O -0.502 6.502 17 N -0.232 5.232 18 C -0.458 4.458 19 H 0.071 0.929 20 C -0.216 4.216 21 N -0.577 5.577 22 Si 0.787 3.213 23 H -0.180 1.180 24 H -0.203 1.203 25 H -0.151 1.151 26 C -0.008 4.008 27 C -0.155 4.155 28 C -0.166 4.166 29 H 0.091 0.909 30 H 0.114 0.886 31 H 0.126 0.874 32 H 0.115 0.885 33 H 0.112 0.888 34 H 0.131 0.869 35 H 0.086 0.914 36 H 0.167 0.833 37 H 0.136 0.864 38 H 0.105 0.895 39 H 0.227 0.773 40 H 0.088 0.912 41 H 0.070 0.930 42 H 0.088 0.912 43 H 0.127 0.873 44 H 0.147 0.853 45 H 0.146 0.854 46 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 7.186 -29.184 -16.499 34.286 hybrid contribution 0.658 1.253 -0.287 1.444 sum 7.845 -27.931 -16.786 33.518 Atomic orbital electron populations 1.22745 0.90091 1.06900 1.05135 1.20076 0.94263 0.74519 0.81292 1.92955 1.90274 1.38037 1.96597 1.93017 1.90615 1.80852 1.52506 1.22209 1.10722 0.98285 0.92369 1.18998 0.80610 0.79083 0.85855 1.90718 1.32906 1.64994 1.56206 1.48419 1.29918 1.28556 1.26811 1.22753 0.87367 0.93907 0.99115 1.23582 1.04245 0.96034 0.95865 1.22671 0.95495 0.88277 0.95822 0.86218 1.59874 1.28555 1.04762 1.38041 1.21665 0.93438 0.89745 1.01794 1.21078 0.87157 0.86626 0.81710 1.90562 1.18016 1.81759 1.59906 1.42013 1.10448 1.14505 1.56202 1.18993 0.95454 0.92549 1.38843 0.92934 1.26179 1.05449 0.94201 0.95809 1.69817 1.39223 1.07085 1.41540 0.85330 0.76059 0.80756 0.79136 1.18002 1.20272 1.15099 1.21862 0.99480 0.91866 0.87574 1.23211 0.99471 0.86979 1.05806 1.23366 0.89184 0.97893 1.06151 0.90918 0.88634 0.87355 0.88520 0.88789 0.86874 0.91369 0.83326 0.86363 0.89477 0.77314 0.91175 0.92959 0.91189 0.87344 0.85265 0.85374 0.86449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.79 9.31 71.98 0.67 -2.12 16 2 C 0.34 5.27 2.07 30.59 0.06 5.33 16 3 F -0.20 -3.71 13.88 44.97 0.62 -3.09 16 4 F -0.19 -2.76 15.65 44.97 0.70 -2.05 16 5 C -0.23 -3.54 0.91 -52.93 -0.05 -3.59 16 6 C 0.57 12.68 6.19 87.66 0.54 13.22 16 7 O -0.57 -17.26 17.30 -3.05 -0.05 -17.32 16 8 N -0.60 -12.06 3.31 -811.76 -2.69 -14.74 16 9 C 0.09 1.22 6.04 86.86 0.52 1.74 16 10 C -0.16 -2.26 6.69 32.09 0.21 -2.05 16 11 C 0.09 1.64 3.28 46.21 0.15 1.79 16 12 H 0.12 1.69 7.82 -2.39 -0.02 1.68 16 13 N -0.68 -18.64 5.93 -488.94 -2.90 -21.54 16 14 C 0.07 1.80 6.03 85.56 0.52 2.31 16 15 C 0.45 19.54 7.82 87.66 0.69 20.23 16 16 O -0.62 -34.15 15.78 -3.09 -0.05 -34.20 16 17 N -0.59 -27.09 5.09 -306.98 -1.56 -28.66 16 18 C -0.33 -19.18 10.16 84.04 0.85 -18.32 16 19 H 0.05 3.68 7.39 -2.91 -0.02 3.66 16 20 C -0.02 -0.99 5.50 84.92 0.47 -0.53 16 21 N -0.94 -56.43 13.96 21.66 0.30 -56.13 16 22 Si 0.97 37.92 27.74 68.60 1.90 39.83 16 23 H -0.26 -9.41 7.11 99.48 0.71 -8.70 16 24 H -0.28 -10.92 7.11 99.48 0.71 -10.21 16 25 H -0.23 -7.35 6.52 99.48 0.65 -6.70 16 26 C 0.12 2.64 6.63 86.73 0.57 3.21 16 27 C -0.12 -1.28 9.60 30.62 0.29 -0.98 16 28 C -0.13 -1.19 9.17 30.62 0.28 -0.91 16 29 H 0.07 1.36 7.63 -2.39 -0.02 1.34 16 30 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.09 1.29 4.92 -2.38 -0.01 1.28 16 34 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.07 1.21 7.77 -2.39 -0.02 1.19 16 36 H 0.35 10.54 7.91 -89.69 -0.71 9.83 16 37 H 0.12 2.65 8.08 -2.39 -0.02 2.63 16 38 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.39 14.53 5.76 -92.71 -0.53 13.99 16 40 H 0.28 15.34 8.31 -92.71 -0.77 14.57 16 41 H 0.05 1.50 8.03 -2.38 -0.02 1.48 16 42 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 43 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 44 H 0.13 0.96 7.97 -2.39 -0.02 0.94 16 45 H 0.13 0.85 7.60 -2.39 -0.02 0.84 16 46 H 0.12 0.89 8.14 -2.38 -0.02 0.87 16 Total: -1.00 -82.78 383.09 1.80 -80.98 By element: Atomic # 1 Polarization: 37.85 SS G_CDS: -0.27 Total: 37.58 kcal Atomic # 6 Polarization: 13.55 SS G_CDS: 5.79 Total: 19.34 kcal Atomic # 7 Polarization: -114.22 SS G_CDS: -6.85 Total: -121.07 kcal Atomic # 8 Polarization: -51.41 SS G_CDS: -0.10 Total: -51.51 kcal Atomic # 9 Polarization: -6.47 SS G_CDS: 1.33 Total: -5.14 kcal Atomic # 14 Polarization: 37.92 SS G_CDS: 1.90 Total: 39.83 kcal Total: -82.78 1.80 -80.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185690450.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.030 kcal (2) G-P(sol) polarization free energy of solvation -82.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds