Wall clock time and date at job start Wed Apr 1 2020 04:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 F 1.39903 * 109.47030 * 2 1 4 4 F 1.39900 * 109.46802 * 240.00592 * 2 1 3 5 5 C 1.50694 * 109.47158 * 120.00287 * 2 1 3 6 6 O 1.21283 * 120.00363 * 334.99797 * 5 2 1 7 7 N 1.34784 * 119.99988 * 154.99915 * 5 2 1 8 8 C 1.46493 * 119.99864 * 179.72721 * 7 5 2 9 9 H 1.08999 * 112.88888 * 334.66280 * 8 7 5 10 10 C 1.53947 * 113.66533 * 106.01541 * 8 7 5 11 11 C 1.53944 * 87.29966 * 89.73666 * 10 8 7 12 12 H 1.09005 * 113.65797 * 270.17109 * 11 10 8 13 13 N 1.46901 * 113.66427 * 139.20841 * 11 10 8 14 14 C 1.46895 * 110.99967 * 104.50563 * 13 11 10 15 15 C 1.50699 * 109.47338 * 180.02562 * 14 13 11 16 16 O 1.21297 * 119.99461 * 359.97438 * 15 14 13 17 17 N 1.34773 * 120.00278 * 179.97438 * 15 14 13 18 18 C 1.37098 * 119.99890 * 179.97438 * 17 15 14 19 19 H 1.08002 * 120.00309 * 359.97438 * 18 17 15 20 20 C 1.38954 * 120.00224 * 179.97438 * 18 17 15 21 21 N 1.31409 * 119.99749 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00249 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47209 * 89.99858 * 22 20 18 24 24 H 1.48500 * 109.46977 * 210.00307 * 22 20 18 25 25 H 1.48504 * 109.47283 * 329.99955 * 22 20 18 26 26 C 1.52917 * 113.66219 * 203.32155 * 8 7 5 27 27 C 1.52905 * 121.13891 * 144.70918 * 26 8 7 28 28 C 1.53952 * 86.78266 * 209.38131 * 27 26 8 29 29 C 1.52910 * 121.13618 * 36.14152 * 26 8 7 30 30 H 1.09007 * 109.46950 * 299.99798 * 1 2 3 31 31 H 1.08998 * 109.47209 * 59.99285 * 1 2 3 32 32 H 1.08996 * 109.47153 * 180.02562 * 1 2 3 33 33 H 0.97000 * 119.99339 * 0.02562 * 7 5 2 34 34 H 1.09008 * 113.57994 * 204.34594 * 10 8 7 35 35 H 1.08999 * 113.58030 * 335.12686 * 10 8 7 36 36 H 1.00899 * 110.99552 * 228.45607 * 13 11 10 37 37 H 1.09000 * 109.47252 * 299.99500 * 14 13 11 38 38 H 1.08994 * 109.47771 * 59.99861 * 14 13 11 39 39 H 0.97000 * 120.00177 * 359.97438 * 17 15 14 40 40 H 0.96997 * 120.00075 * 179.97438 * 21 20 18 41 41 H 1.09008 * 113.65857 * 323.84776 * 27 26 8 42 42 H 1.08993 * 113.66562 * 94.90667 * 27 26 8 43 43 H 1.08995 * 113.57998 * 270.13288 * 28 27 26 44 44 H 1.08998 * 113.65521 * 139.34354 * 28 27 26 45 45 H 1.09001 * 113.66594 * 265.09442 * 29 26 8 46 46 H 1.09006 * 113.65872 * 36.05610 * 29 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9963 -0.6594 -1.1424 5 6 2.0323 -0.7104 1.2304 6 8 1.3370 -0.7706 2.2223 7 7 3.2544 -1.2790 1.2285 8 6 3.7451 -1.9645 2.4266 9 1 3.2839 -1.5978 3.3437 10 6 3.7432 -3.4992 2.3049 11 6 5.1715 -3.3836 1.7425 12 1 5.2073 -3.2740 0.6586 13 7 6.0876 -4.4172 2.2428 14 6 6.3345 -5.4419 1.2196 15 6 7.2758 -6.4830 1.7681 16 8 7.6998 -6.3811 2.9000 17 7 7.6466 -7.5273 1.0010 18 6 8.5034 -8.4742 1.4999 19 1 8.8816 -8.3831 2.5074 20 6 8.8853 -9.5512 0.7092 21 7 8.4248 -9.6623 -0.5165 22 14 10.0533 -10.8409 1.3887 23 1 9.2719 -11.9194 2.0454 24 1 10.8554 -11.4160 0.2791 25 1 10.9612 -10.2125 2.3817 26 6 5.2697 -2.0557 2.5004 27 6 6.0037 -1.9609 3.8384 28 6 7.1826 -1.3614 3.0505 29 6 6.1554 -0.9169 1.9935 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 3.8105 -1.2306 0.4353 34 1 3.6928 -4.0127 3.2652 35 1 3.0197 -3.8784 1.5833 36 1 6.9534 -4.0091 2.5621 37 1 5.3918 -5.9143 0.9437 38 1 6.7791 -4.9771 0.3397 39 1 7.3073 -7.6090 0.0960 40 1 8.6917 -10.4139 -1.0686 41 1 5.5463 -1.2629 4.5397 42 1 6.2243 -2.9298 4.2861 43 1 7.8880 -2.1081 2.6859 44 1 7.6716 -0.5308 3.5595 45 1 6.4971 -1.0520 0.9673 46 1 5.7398 0.0744 2.1748 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001202310391.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:20 Heat of formation + Delta-G solvation = -123.911214 kcal Electronic energy + Delta-G solvation = -30678.872357 eV Core-core repulsion = 26047.734332 eV Total energy + Delta-G solvation = -4631.138025 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.66299 -47.65894 -41.35939 -39.59175 -38.16461 -35.74315 -34.76769 -33.83872 -32.44228 -31.86544 -31.20591 -27.18726 -26.04519 -25.65641 -24.77746 -24.29906 -22.73508 -21.44233 -20.63966 -19.40403 -19.22650 -18.36599 -18.13651 -17.82892 -17.19060 -16.48267 -16.09187 -15.96557 -15.59615 -15.19770 -15.01353 -14.67962 -14.53465 -14.45977 -14.24872 -13.97177 -13.83916 -13.75740 -13.30080 -13.22433 -13.05631 -12.90126 -12.57495 -12.48415 -12.41749 -12.22038 -11.99141 -11.75917 -11.60413 -11.43536 -11.25407 -11.04850 -10.65086 -10.40933 -10.33417 -10.30962 -10.24564 -10.21607 -9.52444 -9.40279 -8.47256 -8.11159 -7.97729 -6.43303 -3.84140 1.69296 2.13725 3.16809 3.23723 3.25532 3.31188 3.47498 3.88676 3.94339 4.00715 4.05257 4.10615 4.23303 4.33435 4.52158 4.58183 4.67921 4.73355 4.92328 5.05702 5.11353 5.21986 5.23696 5.26618 5.37941 5.41137 5.51112 5.55291 5.61166 5.69111 5.76458 5.78604 5.94350 5.95044 6.04238 6.17049 6.18316 6.27530 6.30005 6.81098 7.21289 7.41952 7.53742 7.61412 8.04658 8.59399 9.16259 9.52598 10.03809 10.74448 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.017540 B = 0.002175 C = 0.002037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.973257 B =12872.638730 C =13743.060344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.281 3.719 3 F -0.182 7.182 4 F -0.188 7.188 5 C 0.488 3.512 6 O -0.501 6.501 7 N -0.688 5.688 8 C 0.127 3.873 9 H 0.109 0.891 10 C -0.131 4.131 11 C 0.084 3.916 12 H 0.071 0.929 13 N -0.651 5.651 14 C 0.049 3.951 15 C 0.441 3.559 16 O -0.583 6.583 17 N -0.563 5.563 18 C -0.299 4.299 19 H 0.103 0.897 20 C 0.022 3.978 21 N -0.902 5.902 22 Si 0.930 3.070 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.270 1.270 26 C -0.110 4.110 27 C -0.109 4.109 28 C -0.139 4.139 29 C -0.131 4.131 30 H 0.101 0.899 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.408 0.592 34 H 0.105 0.895 35 H 0.069 0.931 36 H 0.351 0.649 37 H 0.086 0.914 38 H 0.043 0.957 39 H 0.392 0.608 40 H 0.272 0.728 41 H 0.084 0.916 42 H 0.090 0.910 43 H 0.083 0.917 44 H 0.069 0.931 45 H 0.067 0.933 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.996 21.302 -1.341 24.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.241 3.759 3 F -0.163 7.163 4 F -0.169 7.169 5 C 0.269 3.731 6 O -0.375 6.375 7 N -0.338 5.338 8 C 0.022 3.978 9 H 0.127 0.873 10 C -0.171 4.171 11 C -0.027 4.027 12 H 0.089 0.911 13 N -0.285 5.285 14 C -0.084 4.084 15 C 0.226 3.774 16 O -0.468 6.468 17 N -0.200 5.200 18 C -0.429 4.429 19 H 0.121 0.879 20 C -0.180 4.180 21 N -0.543 5.543 22 Si 0.757 3.243 23 H -0.204 1.204 24 H -0.209 1.209 25 H -0.194 1.194 26 C -0.111 4.111 27 C -0.147 4.147 28 C -0.177 4.177 29 C -0.169 4.169 30 H 0.120 0.880 31 H 0.110 0.890 32 H 0.114 0.886 33 H 0.243 0.757 34 H 0.123 0.877 35 H 0.088 0.912 36 H 0.173 0.827 37 H 0.104 0.896 38 H 0.061 0.939 39 H 0.225 0.775 40 H 0.081 0.919 41 H 0.103 0.897 42 H 0.109 0.891 43 H 0.101 0.899 44 H 0.088 0.912 45 H 0.086 0.914 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -13.613 20.812 0.287 24.870 hybrid contribution 1.318 -0.242 -1.675 2.145 sum -12.295 20.570 -1.389 24.005 Atomic orbital electron populations 1.22647 0.88684 1.06513 1.06219 1.21390 0.96016 0.76181 0.82278 1.93096 1.90523 1.36129 1.96567 1.93079 1.90452 1.80627 1.52745 1.20711 0.82826 0.80375 0.89182 1.90794 1.55614 1.58138 1.32941 1.45625 1.16462 1.54576 1.17112 1.21854 0.94387 0.93565 0.88004 0.87346 1.23519 0.96214 0.94087 1.03246 1.22861 0.94391 0.89033 0.96398 0.91084 1.60246 1.18974 1.12754 1.36503 1.21744 0.99832 0.93870 0.92970 1.19796 0.85905 0.84521 0.87177 1.90523 1.59179 1.77814 1.19236 1.41866 1.42035 1.20987 1.15109 1.19701 1.21647 1.01086 1.00441 0.87915 1.25267 0.98624 0.98694 0.95379 1.69610 1.44966 1.31884 1.07866 0.85855 0.79854 0.80290 0.78279 1.20370 1.20941 1.19423 1.23210 0.92547 0.95799 0.99556 1.22569 0.95224 1.02627 0.94255 1.22840 0.96475 1.00830 0.97511 1.22780 0.97007 0.97830 0.99270 0.88007 0.89035 0.88650 0.75674 0.87691 0.91208 0.82700 0.89598 0.93945 0.77479 0.91862 0.89736 0.89096 0.89889 0.91235 0.91430 0.89813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.12 8.92 37.16 0.33 -0.79 16 2 C 0.28 2.31 2.47 -27.89 -0.07 2.24 16 3 F -0.18 -1.66 17.05 2.25 0.04 -1.62 16 4 F -0.19 -1.59 16.51 2.25 0.04 -1.56 16 5 C 0.49 4.84 7.23 -10.98 -0.08 4.76 16 6 O -0.50 -6.26 15.72 5.56 0.09 -6.18 16 7 N -0.69 -6.13 4.99 -53.37 -0.27 -6.39 16 8 C 0.13 1.25 4.09 -67.48 -0.28 0.97 16 9 H 0.11 1.17 7.51 -51.93 -0.39 0.78 16 10 C -0.13 -1.46 7.68 -25.75 -0.20 -1.66 16 11 C 0.08 0.96 3.92 -67.11 -0.26 0.70 16 12 H 0.07 0.77 7.90 -51.93 -0.41 0.36 16 13 N -0.65 -9.85 5.64 -107.36 -0.61 -10.46 16 14 C 0.05 0.83 6.03 -4.98 -0.03 0.80 16 15 C 0.44 10.22 7.82 -10.99 -0.09 10.13 16 16 O -0.58 -15.55 15.78 5.54 0.09 -15.46 16 17 N -0.56 -14.14 5.29 -10.96 -0.06 -14.20 16 18 C -0.30 -8.30 9.68 -14.93 -0.14 -8.44 16 19 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 20 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 21 N -0.90 -24.44 13.05 55.50 0.72 -23.72 16 22 Si 0.93 20.97 29.55 -169.99 -5.02 15.95 16 23 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 24 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 25 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 26 C -0.11 -1.06 0.88 -154.55 -0.14 -1.20 16 27 C -0.11 -1.08 7.24 -26.28 -0.19 -1.27 16 28 C -0.14 -1.31 7.80 -25.75 -0.20 -1.51 16 29 C -0.13 -1.13 7.46 -26.28 -0.20 -1.33 16 30 H 0.10 0.63 7.87 -51.92 -0.41 0.22 16 31 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.41 3.09 8.13 -40.82 -0.33 2.76 16 34 H 0.10 1.28 8.14 -51.92 -0.42 0.86 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.35 5.52 6.21 -39.29 -0.24 5.28 16 37 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 38 H 0.04 0.65 8.13 -51.93 -0.42 0.23 16 39 H 0.39 9.42 7.90 -40.82 -0.32 9.10 16 40 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 41 H 0.08 0.75 8.14 -51.92 -0.42 0.32 16 42 H 0.09 1.08 7.29 -51.93 -0.38 0.70 16 43 H 0.08 0.88 7.29 -51.93 -0.38 0.50 16 44 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 45 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 388.59 15.07 5.86 5.86 Total: -1.00 -31.54 388.59 -7.36 -38.90 By element: Atomic # 1 Polarization: 21.58 SS G_CDS: -6.60 Total: 14.98 kcal Atomic # 6 Polarization: 5.54 SS G_CDS: -1.63 Total: 3.91 kcal Atomic # 7 Polarization: -54.57 SS G_CDS: -0.21 Total: -54.77 kcal Atomic # 8 Polarization: -21.81 SS G_CDS: 0.17 Total: -21.64 kcal Atomic # 9 Polarization: -3.25 SS G_CDS: 0.08 Total: -3.17 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.54 -7.36 -38.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202310391.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.015 kcal (2) G-P(sol) polarization free energy of solvation -31.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds