Wall clock time and date at job start Wed Apr 1 2020 04:33:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 F 1.39903 * 109.47030 * 2 1 4 4 F 1.39900 * 109.46802 * 240.00592 * 2 1 3 5 5 C 1.50694 * 109.47158 * 120.00287 * 2 1 3 6 6 O 1.21283 * 120.00363 * 334.99797 * 5 2 1 7 7 N 1.34784 * 119.99988 * 154.99915 * 5 2 1 8 8 C 1.46493 * 119.99864 * 179.72721 * 7 5 2 9 9 H 1.08999 * 112.88888 * 334.66280 * 8 7 5 10 10 C 1.53947 * 113.66533 * 106.01541 * 8 7 5 11 11 C 1.53944 * 87.29966 * 89.73666 * 10 8 7 12 12 H 1.09005 * 113.65797 * 270.17109 * 11 10 8 13 13 N 1.46901 * 113.66427 * 139.20841 * 11 10 8 14 14 C 1.46895 * 110.99967 * 104.50563 * 13 11 10 15 15 C 1.50699 * 109.47338 * 180.02562 * 14 13 11 16 16 O 1.21297 * 119.99461 * 359.97438 * 15 14 13 17 17 N 1.34773 * 120.00278 * 179.97438 * 15 14 13 18 18 C 1.37098 * 119.99890 * 179.97438 * 17 15 14 19 19 H 1.08002 * 120.00309 * 359.97438 * 18 17 15 20 20 C 1.38954 * 120.00224 * 179.97438 * 18 17 15 21 21 N 1.31409 * 119.99749 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00249 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47209 * 89.99858 * 22 20 18 24 24 H 1.48500 * 109.46977 * 210.00307 * 22 20 18 25 25 H 1.48504 * 109.47283 * 329.99955 * 22 20 18 26 26 C 1.52917 * 113.66219 * 203.32155 * 8 7 5 27 27 C 1.52905 * 121.13891 * 144.70918 * 26 8 7 28 28 C 1.53952 * 86.78266 * 209.38131 * 27 26 8 29 29 C 1.52910 * 121.13618 * 36.14152 * 26 8 7 30 30 H 1.09007 * 109.46950 * 299.99798 * 1 2 3 31 31 H 1.08998 * 109.47209 * 59.99285 * 1 2 3 32 32 H 1.08996 * 109.47153 * 180.02562 * 1 2 3 33 33 H 0.97000 * 119.99339 * 0.02562 * 7 5 2 34 34 H 1.09008 * 113.57994 * 204.34594 * 10 8 7 35 35 H 1.08999 * 113.58030 * 335.12686 * 10 8 7 36 36 H 1.00899 * 110.99552 * 228.45607 * 13 11 10 37 37 H 1.09000 * 109.47252 * 299.99500 * 14 13 11 38 38 H 1.08994 * 109.47771 * 59.99861 * 14 13 11 39 39 H 0.97000 * 120.00177 * 359.97438 * 17 15 14 40 40 H 0.96997 * 120.00075 * 179.97438 * 21 20 18 41 41 H 1.09008 * 113.65857 * 323.84776 * 27 26 8 42 42 H 1.08993 * 113.66562 * 94.90667 * 27 26 8 43 43 H 1.08995 * 113.57998 * 270.13288 * 28 27 26 44 44 H 1.08998 * 113.65521 * 139.34354 * 28 27 26 45 45 H 1.09001 * 113.66594 * 265.09442 * 29 26 8 46 46 H 1.09006 * 113.65872 * 36.05610 * 29 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9963 -0.6594 -1.1424 5 6 2.0323 -0.7104 1.2304 6 8 1.3370 -0.7706 2.2223 7 7 3.2544 -1.2790 1.2285 8 6 3.7451 -1.9645 2.4266 9 1 3.2839 -1.5978 3.3437 10 6 3.7432 -3.4992 2.3049 11 6 5.1715 -3.3836 1.7425 12 1 5.2073 -3.2740 0.6586 13 7 6.0876 -4.4172 2.2428 14 6 6.3345 -5.4419 1.2196 15 6 7.2758 -6.4830 1.7681 16 8 7.6998 -6.3811 2.9000 17 7 7.6466 -7.5273 1.0010 18 6 8.5034 -8.4742 1.4999 19 1 8.8816 -8.3831 2.5074 20 6 8.8853 -9.5512 0.7092 21 7 8.4248 -9.6623 -0.5165 22 14 10.0533 -10.8409 1.3887 23 1 9.2719 -11.9194 2.0454 24 1 10.8554 -11.4160 0.2791 25 1 10.9612 -10.2125 2.3817 26 6 5.2697 -2.0557 2.5004 27 6 6.0037 -1.9609 3.8384 28 6 7.1826 -1.3614 3.0505 29 6 6.1554 -0.9169 1.9935 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 3.8105 -1.2306 0.4353 34 1 3.6928 -4.0127 3.2652 35 1 3.0197 -3.8784 1.5833 36 1 6.9534 -4.0091 2.5621 37 1 5.3918 -5.9143 0.9437 38 1 6.7791 -4.9771 0.3397 39 1 7.3073 -7.6090 0.0960 40 1 8.6917 -10.4139 -1.0686 41 1 5.5463 -1.2629 4.5397 42 1 6.2243 -2.9298 4.2861 43 1 7.8880 -2.1081 2.6859 44 1 7.6716 -0.5308 3.5595 45 1 6.4971 -1.0520 0.9673 46 1 5.7398 0.0744 2.1748 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202310391.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:19 Heat of formation + Delta-G solvation = -146.012058 kcal Electronic energy + Delta-G solvation = -30679.830721 eV Core-core repulsion = 26047.734332 eV Total energy + Delta-G solvation = -4632.096389 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.32423 -48.32149 -42.21156 -40.45726 -39.98821 -36.59007 -36.18670 -35.53591 -33.46520 -33.17945 -32.47556 -28.63651 -26.87515 -26.63782 -25.88410 -25.53288 -23.75073 -22.19859 -21.46954 -21.12800 -20.03062 -19.93211 -19.15802 -18.82762 -18.06686 -17.56907 -17.14695 -16.89527 -16.69545 -16.38297 -16.29549 -16.01156 -15.82466 -15.59082 -15.22482 -15.09262 -14.78609 -14.63423 -14.50183 -14.14985 -14.04165 -13.56137 -13.53135 -13.43457 -13.33437 -13.24506 -13.10589 -13.07820 -12.88758 -12.70963 -12.56961 -12.41936 -12.12651 -12.10004 -11.51136 -11.46264 -11.16123 -11.10737 -11.08399 -10.33011 -10.20873 -10.01917 -9.32782 -8.47183 -5.95771 0.91890 1.37634 1.40989 1.41544 1.54082 2.04966 2.28642 2.56413 2.85918 2.90722 3.20224 3.23918 3.33048 3.36671 3.44889 3.56599 3.72078 3.75548 3.84377 3.94032 4.26578 4.40361 4.43659 4.44843 4.50681 4.55146 4.57032 4.58374 4.75104 4.78397 4.83838 4.91939 4.96501 5.03618 5.06471 5.18236 5.34740 5.37927 5.40830 5.48856 5.91383 6.06529 6.13133 6.39453 6.59665 6.68354 7.12279 7.55993 8.11125 8.70257 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.017540 B = 0.002175 C = 0.002037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.973257 B =12872.638730 C =13743.060344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.285 3.715 3 F -0.186 7.186 4 F -0.188 7.188 5 C 0.487 3.513 6 O -0.530 6.530 7 N -0.680 5.680 8 C 0.137 3.863 9 H 0.101 0.899 10 C -0.132 4.132 11 C 0.082 3.918 12 H 0.087 0.913 13 N -0.663 5.663 14 C 0.063 3.937 15 C 0.438 3.562 16 O -0.622 6.622 17 N -0.573 5.573 18 C -0.333 4.333 19 H 0.079 0.921 20 C -0.013 4.013 21 N -0.921 5.921 22 Si 0.992 3.008 23 H -0.272 1.272 24 H -0.270 1.270 25 H -0.273 1.273 26 C -0.102 4.102 27 C -0.111 4.111 28 C -0.139 4.139 29 C -0.120 4.120 30 H 0.100 0.900 31 H 0.110 0.890 32 H 0.099 0.901 33 H 0.416 0.584 34 H 0.090 0.910 35 H 0.071 0.929 36 H 0.347 0.653 37 H 0.101 0.899 38 H 0.067 0.933 39 H 0.396 0.604 40 H 0.278 0.722 41 H 0.097 0.903 42 H 0.066 0.934 43 H 0.068 0.932 44 H 0.080 0.920 45 H 0.075 0.925 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.458 22.330 -2.529 26.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.246 3.754 3 F -0.167 7.167 4 F -0.169 7.169 5 C 0.269 3.731 6 O -0.406 6.406 7 N -0.330 5.330 8 C 0.032 3.968 9 H 0.119 0.881 10 C -0.172 4.172 11 C -0.028 4.028 12 H 0.105 0.895 13 N -0.297 5.297 14 C -0.069 4.069 15 C 0.226 3.774 16 O -0.508 6.508 17 N -0.211 5.211 18 C -0.462 4.462 19 H 0.097 0.903 20 C -0.213 4.213 21 N -0.562 5.562 22 Si 0.816 3.184 23 H -0.197 1.197 24 H -0.195 1.195 25 H -0.197 1.197 26 C -0.103 4.103 27 C -0.149 4.149 28 C -0.177 4.177 29 C -0.157 4.157 30 H 0.119 0.881 31 H 0.129 0.871 32 H 0.118 0.882 33 H 0.254 0.746 34 H 0.109 0.891 35 H 0.090 0.910 36 H 0.168 0.832 37 H 0.119 0.881 38 H 0.085 0.915 39 H 0.230 0.770 40 H 0.087 0.913 41 H 0.115 0.885 42 H 0.085 0.915 43 H 0.087 0.913 44 H 0.099 0.901 45 H 0.094 0.906 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -14.085 21.854 -0.942 26.017 hybrid contribution 1.440 -0.530 -1.270 1.992 sum -12.645 21.324 -2.211 24.890 Atomic orbital electron populations 1.22708 0.86978 1.07152 1.07142 1.21404 0.97048 0.75623 0.81361 1.93091 1.90707 1.36407 1.96535 1.93082 1.90590 1.80631 1.52598 1.21037 0.82638 0.80067 0.89398 1.90785 1.56387 1.59268 1.34118 1.45572 1.16369 1.53962 1.17076 1.21654 0.94353 0.92631 0.88191 0.88079 1.23477 0.96092 0.95017 1.02572 1.22982 0.93476 0.88896 0.97408 0.89488 1.60225 1.19221 1.13713 1.36511 1.21599 0.98776 0.92802 0.93738 1.20870 0.85469 0.84659 0.86440 1.90493 1.60586 1.78705 1.21063 1.41936 1.42248 1.21392 1.15486 1.19659 1.23557 1.02963 1.00063 0.90328 1.26035 0.99696 0.99996 0.95578 1.69668 1.45474 1.32538 1.08481 0.84937 0.77882 0.77702 0.77887 1.19725 1.19519 1.19732 1.23098 0.92534 0.95349 0.99331 1.22583 0.95907 1.01792 0.94620 1.22813 0.96251 1.00794 0.97825 1.22749 0.95892 0.97684 0.99399 0.88133 0.87093 0.88186 0.74642 0.89131 0.90995 0.83231 0.88125 0.91502 0.77004 0.91303 0.88477 0.91493 0.91312 0.90086 0.90608 0.88657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.89 8.92 71.98 0.64 -1.25 16 2 C 0.29 4.17 2.47 29.85 0.07 4.24 16 3 F -0.19 -3.04 17.05 44.97 0.77 -2.27 16 4 F -0.19 -2.77 16.51 44.97 0.74 -2.03 16 5 C 0.49 8.92 7.23 87.65 0.63 9.55 16 6 O -0.53 -12.75 15.72 -3.04 -0.05 -12.80 16 7 N -0.68 -10.84 4.99 -441.15 -2.20 -13.04 16 8 C 0.14 2.52 4.09 45.28 0.19 2.70 16 9 H 0.10 2.09 7.51 -2.39 -0.02 2.07 16 10 C -0.13 -2.81 7.68 31.23 0.24 -2.57 16 11 C 0.08 1.76 3.92 45.30 0.18 1.94 16 12 H 0.09 1.63 7.90 -2.38 -0.02 1.61 16 13 N -0.66 -19.73 5.64 -493.58 -2.79 -22.51 16 14 C 0.06 2.10 6.03 85.56 0.52 2.62 16 15 C 0.44 20.56 7.82 87.66 0.69 21.25 16 16 O -0.62 -34.07 15.78 -3.08 -0.05 -34.12 16 17 N -0.57 -29.22 5.29 -306.98 -1.62 -30.84 16 18 C -0.33 -18.85 9.68 84.04 0.81 -18.04 16 19 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 20 C -0.01 -0.71 5.50 84.93 0.47 -0.25 16 21 N -0.92 -49.54 13.05 21.66 0.28 -49.25 16 22 Si 0.99 42.85 29.55 68.60 2.03 44.87 16 23 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 24 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 25 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 26 C -0.10 -1.82 0.88 -52.21 -0.05 -1.87 16 27 C -0.11 -2.14 7.24 30.88 0.22 -1.92 16 28 C -0.14 -2.45 7.80 31.23 0.24 -2.20 16 29 C -0.12 -1.79 7.46 30.89 0.23 -1.56 16 30 H 0.10 1.09 7.87 -2.38 -0.02 1.08 16 31 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.42 5.27 8.13 -92.71 -0.75 4.52 16 34 H 0.09 2.21 8.14 -2.38 -0.02 2.20 16 35 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.35 10.92 6.21 -89.69 -0.56 10.36 16 37 H 0.10 3.08 8.14 -2.39 -0.02 3.06 16 38 H 0.07 1.92 8.13 -2.39 -0.02 1.90 16 39 H 0.40 19.16 7.90 -92.71 -0.73 18.43 16 40 H 0.28 13.97 8.31 -92.71 -0.77 13.20 16 41 H 0.10 1.61 8.14 -2.38 -0.02 1.59 16 42 H 0.07 1.63 7.29 -2.39 -0.02 1.61 16 43 H 0.07 1.42 7.29 -2.39 -0.02 1.40 16 44 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 45 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 46 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 Total: -1.00 -68.35 388.59 1.20 -67.15 By element: Atomic # 1 Polarization: 43.20 SS G_CDS: -1.00 Total: 42.20 kcal Atomic # 6 Polarization: 7.56 SS G_CDS: 5.09 Total: 12.65 kcal Atomic # 7 Polarization: -109.32 SS G_CDS: -6.33 Total: -115.65 kcal Atomic # 8 Polarization: -46.83 SS G_CDS: -0.10 Total: -46.92 kcal Atomic # 9 Polarization: -5.81 SS G_CDS: 1.51 Total: -4.30 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.87 kcal Total: -68.35 1.20 -67.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202310391.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.857 kcal (2) G-P(sol) polarization free energy of solvation -68.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds