Wall clock time and date at job start Wed Apr 1 2020 04:33:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 F 1.39888 * 109.47490 * 2 1 4 4 F 1.39907 * 109.46463 * 240.00292 * 2 1 3 5 5 C 1.50696 * 109.46852 * 120.00824 * 2 1 3 6 6 O 1.21285 * 120.00120 * 334.99069 * 5 2 1 7 7 N 1.34779 * 120.00175 * 154.99658 * 5 2 1 8 8 C 1.46501 * 120.00206 * 179.97438 * 7 5 2 9 9 H 1.09005 * 112.88166 * 23.65890 * 8 7 5 10 10 C 1.53946 * 113.66568 * 252.18672 * 8 7 5 11 11 C 1.53952 * 87.29515 * 270.26304 * 10 8 7 12 12 H 1.08999 * 113.74608 * 220.78077 * 11 10 8 13 13 N 1.46905 * 113.66358 * 89.74003 * 11 10 8 14 14 C 1.46892 * 110.99935 * 107.81265 * 13 11 10 15 15 C 1.50706 * 109.47095 * 180.02562 * 14 13 11 16 16 O 1.21292 * 119.99870 * 359.97438 * 15 14 13 17 17 N 1.34777 * 120.00150 * 180.02562 * 15 14 13 18 18 C 1.37095 * 119.99970 * 179.97438 * 17 15 14 19 19 H 1.08004 * 120.00455 * 359.97438 * 18 17 15 20 20 C 1.38947 * 120.00240 * 180.02562 * 18 17 15 21 21 N 1.31414 * 120.00367 * 179.97438 * 20 18 17 22 22 Si 1.86805 * 119.99822 * 0.26929 * 20 18 17 23 23 H 1.48500 * 109.47088 * 269.73243 * 22 20 18 24 24 H 1.48505 * 109.47152 * 29.72720 * 22 20 18 25 25 H 1.48494 * 109.47142 * 149.72720 * 22 20 18 26 26 C 1.52902 * 86.78249 * 335.26682 * 11 10 8 27 27 C 1.52909 * 121.13726 * 259.18235 * 26 11 10 28 28 C 1.53958 * 86.78501 * 209.38147 * 27 26 11 29 29 C 1.52911 * 121.13705 * 150.61913 * 26 11 10 30 30 H 1.09003 * 109.46673 * 300.00286 * 1 2 3 31 31 H 1.09005 * 109.46997 * 59.98988 * 1 2 3 32 32 H 1.08991 * 109.47534 * 179.97438 * 1 2 3 33 33 H 0.97001 * 119.99821 * 359.97438 * 7 5 2 34 34 H 1.08992 * 113.58176 * 155.65529 * 10 8 7 35 35 H 1.09007 * 113.57956 * 24.86366 * 10 8 7 36 36 H 1.00903 * 110.99624 * 231.76727 * 13 11 10 37 37 H 1.08993 * 109.47666 * 60.00130 * 14 13 11 38 38 H 1.09000 * 109.47198 * 299.99775 * 14 13 11 39 39 H 0.96999 * 120.00043 * 359.97438 * 17 15 14 40 40 H 0.97005 * 120.00032 * 179.97438 * 21 20 18 41 41 H 1.09001 * 113.66305 * 323.85170 * 27 26 11 42 42 H 1.09001 * 113.66457 * 94.90888 * 27 26 11 43 43 H 1.08998 * 113.57853 * 270.13055 * 28 27 26 44 44 H 1.09000 * 113.58195 * 139.33263 * 28 27 26 45 45 H 1.08998 * 113.66604 * 265.08416 * 29 26 11 46 46 H 1.09001 * 113.66511 * 36.14770 * 29 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9964 1.3189 0.0000 4 9 1.9962 -0.6595 -1.1424 5 6 2.0323 -0.7106 1.2303 6 8 1.3370 -0.7707 2.2223 7 7 3.2542 -1.2792 1.2285 8 6 3.7427 -1.9696 2.4248 9 1 2.9375 -2.3161 3.0727 10 6 4.8524 -1.2053 3.1695 11 6 5.8630 -1.9535 2.2814 12 1 6.7532 -2.2872 2.8146 13 7 6.1764 -1.2552 1.0275 14 6 7.5325 -0.6916 1.0636 15 6 7.8171 0.0159 -0.2363 16 8 6.9735 0.0471 -1.1072 17 7 9.0095 0.6130 -0.4314 18 6 9.2687 1.2562 -1.6141 19 1 8.5175 1.2841 -2.3896 20 6 10.4981 1.8714 -1.8155 21 7 10.7468 2.4875 -2.9494 22 14 11.8008 1.8156 -0.4778 23 1 11.6444 2.9921 0.4147 24 1 11.6439 0.5692 0.3143 25 1 13.1494 1.8410 -1.0987 26 6 4.7960 -3.0381 2.1296 27 6 4.8608 -4.3306 2.9441 28 6 4.1375 -5.0074 1.7656 29 6 4.7171 -3.8988 0.8682 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5140 -0.8899 32 1 -0.3634 -1.0275 -0.0005 33 1 3.8102 -1.2314 0.4351 34 1 4.9258 -1.4629 4.2260 35 1 4.8325 -0.1292 2.9961 36 1 6.0602 -1.8674 0.2339 37 1 8.2558 -1.4943 1.2067 38 1 7.6093 0.0179 1.8874 39 1 9.6844 0.5877 0.2649 40 1 11.6050 2.9173 -3.0898 41 1 5.8750 -4.6968 3.1035 42 1 4.2709 -4.3004 3.8603 43 1 3.0509 -4.9792 1.8466 44 1 4.5195 -6.0013 1.5324 45 1 4.0125 -3.5238 0.1260 46 1 5.6909 -4.1437 0.4441 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001202310399.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:22 Heat of formation + Delta-G solvation = -115.284176 kcal Electronic energy + Delta-G solvation = -31609.472003 eV Core-core repulsion = 26978.708074 eV Total energy + Delta-G solvation = -4630.763928 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.24492 -47.24598 -41.38856 -39.32342 -38.38999 -35.92841 -34.49154 -33.85467 -32.35969 -31.69497 -31.60413 -27.30579 -26.27821 -25.40990 -24.86923 -23.98551 -22.98341 -20.97812 -20.60682 -19.51128 -19.13249 -18.39601 -18.08005 -17.74690 -16.77688 -16.50775 -16.12979 -15.79508 -15.59358 -15.31881 -14.93700 -14.79318 -14.60396 -14.11085 -14.01277 -13.85643 -13.55351 -13.46160 -13.32129 -12.91198 -12.83758 -12.70785 -12.64797 -12.58047 -12.41765 -12.15974 -12.12776 -12.05569 -11.96157 -11.63400 -11.30315 -11.16037 -10.66365 -10.61613 -10.38486 -10.17300 -10.10035 -9.98745 -9.59241 -9.22275 -8.62136 -8.27319 -8.19257 -6.32652 -3.84206 1.97414 2.44581 3.00369 3.05441 3.13608 3.56295 3.70111 3.74566 3.85004 4.08314 4.10133 4.26314 4.36198 4.38083 4.47245 4.50754 4.62191 4.65506 4.94491 5.10970 5.17829 5.19841 5.24432 5.31948 5.39788 5.44917 5.48342 5.53290 5.60045 5.60192 5.65790 5.69397 5.74628 5.79420 5.89681 5.97489 6.08067 6.16523 6.28976 7.00888 7.19409 7.43797 7.55910 7.73922 8.12544 8.57361 8.93104 9.40403 9.79733 10.80376 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.010838 B = 0.003269 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2582.820876 B = 8563.705871 C =10224.558650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.282 3.718 3 F -0.177 7.177 4 F -0.186 7.186 5 C 0.489 3.511 6 O -0.515 6.515 7 N -0.676 5.676 8 C 0.153 3.847 9 H 0.102 0.898 10 C -0.143 4.143 11 C 0.073 3.927 12 H 0.064 0.936 13 N -0.652 5.652 14 C 0.051 3.949 15 C 0.448 3.552 16 O -0.564 6.564 17 N -0.589 5.589 18 C -0.305 4.305 19 H 0.120 0.880 20 C 0.042 3.958 21 N -0.880 5.880 22 Si 0.880 3.120 23 H -0.271 1.271 24 H -0.270 1.270 25 H -0.277 1.277 26 C -0.120 4.120 27 C -0.105 4.105 28 C -0.137 4.137 29 C -0.131 4.131 30 H 0.099 0.901 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.420 0.580 34 H 0.092 0.908 35 H 0.083 0.917 36 H 0.352 0.648 37 H 0.047 0.953 38 H 0.088 0.912 39 H 0.370 0.630 40 H 0.273 0.727 41 H 0.088 0.912 42 H 0.072 0.928 43 H 0.080 0.920 44 H 0.069 0.931 45 H 0.073 0.927 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.758 -13.264 13.316 23.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.242 3.758 3 F -0.158 7.158 4 F -0.167 7.167 5 C 0.270 3.730 6 O -0.391 6.391 7 N -0.327 5.327 8 C 0.047 3.953 9 H 0.120 0.880 10 C -0.182 4.182 11 C -0.038 4.038 12 H 0.082 0.918 13 N -0.285 5.285 14 C -0.082 4.082 15 C 0.234 3.766 16 O -0.446 6.446 17 N -0.228 5.228 18 C -0.434 4.434 19 H 0.138 0.862 20 C -0.161 4.161 21 N -0.520 5.520 22 Si 0.706 3.294 23 H -0.196 1.196 24 H -0.196 1.196 25 H -0.202 1.202 26 C -0.121 4.121 27 C -0.143 4.143 28 C -0.174 4.174 29 C -0.169 4.169 30 H 0.118 0.882 31 H 0.109 0.891 32 H 0.110 0.890 33 H 0.259 0.741 34 H 0.110 0.890 35 H 0.102 0.898 36 H 0.173 0.827 37 H 0.065 0.935 38 H 0.106 0.894 39 H 0.203 0.797 40 H 0.084 0.916 41 H 0.107 0.893 42 H 0.091 0.909 43 H 0.098 0.902 44 H 0.087 0.913 45 H 0.092 0.908 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -15.929 -12.551 13.419 24.317 hybrid contribution 2.309 -0.466 0.313 2.376 sum -13.620 -13.017 13.732 23.314 Atomic orbital electron populations 1.22633 0.89074 1.06075 1.06124 1.21301 0.95535 0.76615 0.82358 1.93125 1.90460 1.35728 1.96508 1.93093 1.90444 1.80575 1.52610 1.20751 0.82644 0.80384 0.89174 1.90743 1.56523 1.58581 1.33211 1.45608 1.16151 1.53469 1.17468 1.21470 0.95236 0.91795 0.86774 0.87960 1.23521 0.95057 1.01457 0.98208 1.22552 0.96139 0.92856 0.92231 0.91776 1.59886 1.26295 1.39067 1.03293 1.21750 0.89256 0.98782 0.98414 1.19681 0.83387 0.84528 0.88993 1.90570 1.45889 1.63036 1.45101 1.42192 1.13697 1.50108 1.16837 1.19432 1.01708 1.29180 0.93071 0.86242 1.25039 0.97400 0.96893 0.96783 1.69624 1.24164 1.34800 1.23438 0.86672 0.82189 0.78622 0.81884 1.19597 1.19572 1.20190 1.23196 0.96806 0.93049 0.99082 1.22561 1.01393 0.93082 0.97268 1.22805 1.00226 0.98071 0.96312 1.22680 1.01887 0.96248 0.96043 0.88168 0.89080 0.88987 0.74090 0.88968 0.89800 0.82699 0.93546 0.89360 0.79712 0.91596 0.89348 0.90896 0.90177 0.91252 0.90831 0.89521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.64 8.92 37.16 0.33 -1.30 16 2 C 0.28 3.52 2.47 -27.88 -0.07 3.45 16 3 F -0.18 -2.62 17.05 2.25 0.04 -2.58 16 4 F -0.19 -2.48 16.51 2.25 0.04 -2.44 16 5 C 0.49 6.47 7.23 -10.99 -0.08 6.39 16 6 O -0.51 -7.52 15.69 5.55 0.09 -7.43 16 7 N -0.68 -8.42 4.62 -53.37 -0.25 -8.67 16 8 C 0.15 1.64 4.12 -67.48 -0.28 1.36 16 9 H 0.10 1.11 7.46 -51.93 -0.39 0.72 16 10 C -0.14 -1.53 7.68 -25.75 -0.20 -1.73 16 11 C 0.07 0.78 4.05 -67.26 -0.27 0.51 16 12 H 0.06 0.64 7.87 -51.93 -0.41 0.23 16 13 N -0.65 -9.18 4.83 -107.52 -0.52 -9.70 16 14 C 0.05 0.79 6.01 -4.98 -0.03 0.76 16 15 C 0.45 9.87 7.82 -10.98 -0.09 9.78 16 16 O -0.56 -14.66 15.78 5.55 0.09 -14.57 16 17 N -0.59 -13.79 5.09 -10.96 -0.06 -13.85 16 18 C -0.31 -8.57 10.16 -14.94 -0.15 -8.72 16 19 H 0.12 3.85 7.39 -52.48 -0.39 3.46 16 20 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 21 N -0.88 -25.65 13.96 55.50 0.77 -24.88 16 22 Si 0.88 19.24 27.74 -169.99 -4.71 14.52 16 23 H -0.27 -5.83 7.11 56.52 0.40 -5.42 16 24 H -0.27 -5.35 6.52 56.52 0.37 -4.99 16 25 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 26 C -0.12 -1.10 0.82 -154.71 -0.13 -1.22 16 27 C -0.10 -0.76 7.84 -26.28 -0.21 -0.97 16 28 C -0.14 -1.03 8.08 -25.74 -0.21 -1.24 16 29 C -0.13 -1.19 6.45 -26.28 -0.17 -1.36 16 30 H 0.10 0.88 7.87 -51.93 -0.41 0.47 16 31 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.42 5.66 6.80 -40.82 -0.28 5.38 16 34 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 36 H 0.35 5.14 7.09 -39.29 -0.28 4.86 16 37 H 0.05 0.63 8.13 -51.93 -0.42 0.21 16 38 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.37 7.61 5.76 -40.82 -0.24 7.37 16 40 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 41 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.07 0.73 7.58 -51.93 -0.39 0.34 16 46 H 0.09 0.80 8.09 -51.93 -0.42 0.38 16 LS Contribution 384.78 15.07 5.80 5.80 Total: -1.00 -32.83 384.78 -6.95 -39.77 By element: Atomic # 1 Polarization: 23.84 SS G_CDS: -6.59 Total: 17.25 kcal Atomic # 6 Polarization: 8.41 SS G_CDS: -1.64 Total: 6.77 kcal Atomic # 7 Polarization: -57.04 SS G_CDS: -0.05 Total: -57.09 kcal Atomic # 8 Polarization: -22.18 SS G_CDS: 0.17 Total: -22.00 kcal Atomic # 9 Polarization: -5.10 SS G_CDS: 0.08 Total: -5.02 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -4.71 Total: 14.52 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.83 -6.95 -39.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202310399.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.511 kcal (2) G-P(sol) polarization free energy of solvation -32.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds