Wall clock time and date at job start Wed Apr 1 2020 02:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 F 1.39895 * 109.47201 * 2 1 4 4 F 1.39908 * 109.46936 * 240.00041 * 2 1 3 5 5 C 1.53003 * 109.47344 * 120.00157 * 2 1 3 6 6 C 1.50692 * 115.54850 * 294.29742 * 5 2 1 7 7 O 1.21278 * 120.00383 * 113.85718 * 6 5 2 8 8 N 1.34778 * 119.99829 * 293.85014 * 6 5 2 9 9 C 1.46507 * 119.99925 * 185.24343 * 8 6 5 10 10 C 1.52995 * 109.46979 * 180.02562 * 9 8 6 11 11 H 1.09004 * 112.78737 * 284.18790 * 10 9 8 12 12 C 1.53511 * 113.47604 * 153.38447 * 10 9 8 13 13 C 1.53512 * 83.57506 * 219.20747 * 12 10 9 14 14 N 1.47473 * 113.48015 * 55.00248 * 10 9 8 15 15 C 1.46901 * 111.00192 * 253.46976 * 14 10 9 16 16 C 1.50706 * 109.47266 * 198.51025 * 15 14 10 17 17 O 1.21290 * 119.99803 * 358.91902 * 16 15 14 18 18 N 1.34776 * 119.99694 * 178.91629 * 16 15 14 19 19 C 1.37103 * 119.99763 * 179.97438 * 18 16 15 20 20 H 1.08003 * 119.99499 * 0.02562 * 19 18 16 21 21 C 1.38939 * 120.00223 * 179.97438 * 19 18 16 22 22 N 1.31422 * 120.00022 * 359.72964 * 21 19 18 23 23 Si 1.86800 * 120.00408 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47198 * 60.00087 * 23 21 19 25 25 H 1.48493 * 109.47215 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.46969 * 300.00010 * 23 21 19 27 27 C 1.52998 * 117.49751 * 79.96634 * 5 2 1 28 28 C 1.53000 * 117.49754 * 148.62519 * 5 2 1 29 29 H 1.09003 * 109.46774 * 305.30901 * 1 2 3 30 30 H 1.08992 * 109.47103 * 65.30979 * 1 2 3 31 31 H 1.09000 * 109.47205 * 185.31573 * 1 2 3 32 32 H 0.96998 * 120.00372 * 5.25314 * 8 6 5 33 33 H 1.08999 * 109.46934 * 60.00482 * 9 8 6 34 34 H 1.09000 * 109.47208 * 300.00992 * 9 8 6 35 35 H 1.08997 * 114.17313 * 105.56033 * 12 10 9 36 36 H 1.08998 * 114.17312 * 332.85131 * 12 10 9 37 37 H 1.09000 * 113.47381 * 271.25643 * 13 12 10 38 38 H 1.08997 * 113.53275 * 140.79993 * 13 12 10 39 39 H 1.09005 * 109.47109 * 78.50907 * 15 14 10 40 40 H 1.08996 * 109.47339 * 318.51233 * 15 14 10 41 41 H 0.96998 * 120.00127 * 0.02562 * 18 16 15 42 42 H 0.96997 * 120.00141 * 180.02562 * 22 21 19 43 43 H 1.09003 * 117.50062 * 215.00261 * 27 5 2 44 44 H 1.09003 * 117.50199 * 0.02562 * 27 5 2 45 45 H 1.08999 * 117.50016 * 359.97438 * 28 5 2 46 46 H 1.08998 * 117.50068 * 144.98032 * 28 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9964 1.3189 0.0000 4 9 1.9963 -0.6595 -1.1424 5 6 2.0401 -0.7213 1.2492 6 6 1.7293 -0.0478 2.5610 7 8 0.9777 -0.5777 3.3516 8 7 2.2868 1.1434 2.8555 9 6 2.0771 1.7439 4.1753 10 6 2.8117 3.0840 4.2483 11 1 3.8888 2.9690 4.3702 12 6 2.1857 4.0711 5.2435 13 6 2.5191 5.1070 4.1608 14 7 2.4389 4.0180 3.1696 15 6 3.5146 4.1305 2.1756 16 6 3.3189 5.3848 1.3634 17 8 2.3653 6.1031 1.5772 18 7 4.2037 5.7084 0.3996 19 6 4.0254 6.8492 -0.3397 20 1 3.1761 7.4887 -0.1493 21 6 4.9376 7.1831 -1.3330 22 7 5.9744 6.4082 -1.5604 23 14 4.6951 8.7378 -2.3397 24 1 4.6994 9.9174 -1.4376 25 1 5.7970 8.8651 -3.3270 26 1 3.3958 8.6665 -3.0553 27 6 2.0527 -2.2510 1.2260 28 6 3.3680 -1.4731 1.1382 29 1 -0.3633 0.5940 0.8387 30 1 -0.3633 0.4292 -0.9336 31 1 -0.3633 -1.0232 0.0952 32 1 2.8267 1.6032 2.1938 33 1 2.4635 1.0751 4.9444 34 1 1.0111 1.9050 4.3361 35 1 2.7516 4.1929 6.1671 36 1 1.1181 3.9238 5.4066 37 1 3.5181 5.5318 4.2593 38 1 1.7485 5.8673 4.0339 39 1 3.4919 3.2632 1.5158 40 1 4.4772 4.1742 2.6852 41 1 4.9661 5.1338 0.2284 42 1 6.6116 6.6415 -2.2535 43 1 1.8362 -2.7704 2.1596 44 1 1.6980 -2.7437 0.3207 45 1 3.8781 -1.4542 0.1751 46 1 4.0171 -1.4803 2.0138 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269293351.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:07 Heat of formation + Delta-G solvation = -106.069898 kcal Electronic energy + Delta-G solvation = -31834.299662 eV Core-core repulsion = 27203.935295 eV Total energy + Delta-G solvation = -4630.364367 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.14180 -47.13393 -40.63415 -39.85782 -37.76360 -36.85006 -34.63275 -33.91935 -31.47816 -31.40018 -30.68358 -28.65521 -25.82697 -25.30453 -23.75239 -23.45760 -22.87943 -22.10329 -20.20931 -19.58531 -19.27101 -18.18345 -17.92419 -17.52075 -16.55124 -16.36146 -16.27157 -15.99659 -15.66860 -15.06596 -14.90938 -14.63028 -14.40819 -14.04598 -13.96266 -13.84673 -13.79736 -13.58056 -13.39764 -13.15114 -12.81484 -12.67162 -12.41742 -12.30858 -12.03860 -11.94819 -11.82363 -11.72032 -11.50673 -11.40416 -11.07052 -10.98670 -10.81176 -10.68984 -10.50902 -10.44894 -10.22736 -10.01501 -9.50839 -9.15154 -8.75617 -8.29629 -7.98126 -6.43139 -3.84058 2.23620 2.81557 3.12990 3.18898 3.24929 3.29194 3.45263 3.85179 3.90911 3.95370 4.04463 4.18855 4.24280 4.36191 4.51849 4.64174 4.71688 4.74166 4.95113 4.96330 5.14487 5.21745 5.25111 5.33196 5.35544 5.38825 5.45438 5.47052 5.50284 5.62368 5.69641 5.70376 5.73807 5.80433 5.83841 6.08143 6.17884 6.27030 6.33883 6.58097 7.17729 7.35735 7.53505 8.01313 8.03259 8.58845 9.15897 9.51462 10.02771 10.74426 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.010328 B = 0.003545 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2710.512175 B = 7897.111175 C = 9827.602106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.332 3.668 3 F -0.186 7.186 4 F -0.193 7.193 5 C -0.223 4.223 6 C 0.557 3.443 7 O -0.533 6.533 8 N -0.709 5.709 9 C 0.140 3.860 10 C 0.002 3.998 11 H 0.083 0.917 12 C -0.137 4.137 13 C 0.018 3.982 14 N -0.437 5.437 15 C 0.007 3.993 16 C 0.443 3.557 17 O -0.578 6.578 18 N -0.561 5.561 19 C -0.300 4.300 20 H 0.102 0.898 21 C 0.024 3.976 22 N -0.901 5.901 23 Si 0.930 3.070 24 H -0.274 1.274 25 H -0.284 1.284 26 H -0.273 1.273 27 C -0.122 4.122 28 C -0.144 4.144 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.407 0.593 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.095 0.905 37 H 0.066 0.934 38 H 0.095 0.905 39 H 0.086 0.914 40 H 0.056 0.944 41 H 0.392 0.608 42 H 0.272 0.728 43 H 0.115 0.885 44 H 0.112 0.888 45 H 0.115 0.885 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.803 -16.705 8.564 19.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C 0.295 3.705 3 F -0.166 7.166 4 F -0.174 7.174 5 C -0.227 4.227 6 C 0.341 3.659 7 O -0.410 6.410 8 N -0.361 5.361 9 C 0.016 3.984 10 C -0.108 4.108 11 H 0.101 0.899 12 C -0.175 4.175 13 C -0.111 4.111 14 N -0.159 5.159 15 C -0.125 4.125 16 C 0.228 3.772 17 O -0.462 6.462 18 N -0.198 5.198 19 C -0.429 4.429 20 H 0.120 0.880 21 C -0.178 4.178 22 N -0.542 5.542 23 Si 0.757 3.243 24 H -0.199 1.199 25 H -0.209 1.209 26 H -0.199 1.199 27 C -0.160 4.160 28 C -0.181 4.181 29 H 0.109 0.891 30 H 0.106 0.894 31 H 0.109 0.891 32 H 0.244 0.756 33 H 0.088 0.912 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.113 0.887 37 H 0.084 0.916 38 H 0.113 0.887 39 H 0.104 0.896 40 H 0.074 0.926 41 H 0.225 0.775 42 H 0.082 0.918 43 H 0.133 0.867 44 H 0.130 0.870 45 H 0.133 0.867 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -5.372 -16.632 8.680 19.515 hybrid contribution 1.753 0.915 -0.941 2.190 sum -3.618 -15.716 7.739 17.888 Atomic orbital electron populations 1.22723 0.90639 1.05628 1.05765 1.20070 0.93890 0.75352 0.81202 1.93091 1.90456 1.36567 1.96523 1.93012 1.90611 1.81002 1.52767 1.22449 1.08095 0.97742 0.94434 1.18867 0.80022 0.81077 0.85885 1.90700 1.35260 1.65039 1.50004 1.45981 1.52818 1.20261 1.17045 1.21394 1.01188 0.92079 0.83700 1.23845 0.99091 0.93412 0.94452 0.89943 1.23223 1.01930 0.95702 0.96654 1.23519 1.02124 0.95574 0.89843 1.68889 1.37098 1.04642 1.05314 1.22553 0.93754 0.99488 0.96709 1.19576 0.85545 0.87750 0.84297 1.90526 1.31810 1.53412 1.70475 1.41844 1.23853 1.23285 1.30801 1.19643 1.10130 1.00249 1.12902 0.87983 1.25252 0.95365 0.99302 0.97881 1.69605 1.12952 1.38298 1.33366 0.85924 0.77885 0.81273 0.79188 1.19918 1.20948 1.19864 1.23063 0.99309 0.88441 1.05152 1.23203 0.89676 1.00006 1.05186 0.89119 0.89444 0.89079 0.75632 0.91166 0.90507 0.90525 0.88673 0.91611 0.88701 0.89604 0.92636 0.77524 0.91801 0.86713 0.87015 0.86679 0.87329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.00 9.19 37.16 0.34 -1.66 16 2 C 0.33 4.03 2.08 -26.73 -0.06 3.97 16 3 F -0.19 -2.80 15.62 2.25 0.04 -2.77 16 4 F -0.19 -2.36 15.65 2.25 0.04 -2.33 16 5 C -0.22 -2.45 1.70 -155.66 -0.26 -2.71 16 6 C 0.56 7.23 6.50 -10.99 -0.07 7.16 16 7 O -0.53 -8.15 16.72 5.56 0.09 -8.06 16 8 N -0.71 -8.92 5.30 -60.29 -0.32 -9.24 16 9 C 0.14 1.63 5.82 -4.04 -0.02 1.61 16 10 C 0.00 0.03 3.25 -71.44 -0.23 -0.21 16 11 H 0.08 0.87 7.63 -51.93 -0.40 0.48 16 12 C -0.14 -1.49 8.00 -26.20 -0.21 -1.70 16 13 C 0.02 0.27 6.24 -7.55 -0.05 0.22 16 14 N -0.44 -6.93 5.78 -237.97 -1.37 -8.31 16 15 C 0.01 0.12 5.10 -4.97 -0.03 0.10 16 16 C 0.44 10.38 7.54 -10.98 -0.08 10.29 16 17 O -0.58 -15.47 14.74 5.55 0.08 -15.39 16 18 N -0.56 -14.17 5.29 -10.96 -0.06 -14.23 16 19 C -0.30 -8.34 9.68 -14.93 -0.14 -8.49 16 20 H 0.10 2.98 7.16 -52.48 -0.38 2.60 16 21 C 0.02 0.64 5.50 -17.47 -0.10 0.54 16 22 N -0.90 -24.43 13.05 55.50 0.72 -23.70 16 23 Si 0.93 21.06 29.55 -169.99 -5.02 16.04 16 24 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 25 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 26 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 27 C -0.12 -1.05 9.52 -26.69 -0.25 -1.30 16 28 C -0.14 -1.27 9.66 -26.69 -0.26 -1.52 16 29 H 0.09 1.03 7.89 -51.93 -0.41 0.63 16 30 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.41 5.29 5.18 -40.82 -0.21 5.08 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.08 0.97 7.87 -51.93 -0.41 0.56 16 35 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.09 1.00 7.94 -51.93 -0.41 0.59 16 37 H 0.07 0.99 7.84 -51.93 -0.41 0.58 16 38 H 0.09 1.62 7.88 -51.93 -0.41 1.21 16 39 H 0.09 1.41 6.56 -51.93 -0.34 1.07 16 40 H 0.06 0.85 7.56 -51.93 -0.39 0.46 16 41 H 0.39 9.48 7.90 -40.82 -0.32 9.15 16 42 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 43 H 0.11 0.97 8.01 -51.93 -0.42 0.56 16 44 H 0.11 0.81 7.95 -51.93 -0.41 0.39 16 45 H 0.11 0.98 7.62 -51.93 -0.40 0.58 16 46 H 0.11 0.86 8.14 -51.93 -0.42 0.43 16 LS Contribution 386.78 15.07 5.83 5.83 Total: -1.00 -32.88 386.78 -7.96 -40.84 By element: Atomic # 1 Polarization: 21.56 SS G_CDS: -6.56 Total: 15.00 kcal Atomic # 6 Polarization: 7.73 SS G_CDS: -1.42 Total: 6.31 kcal Atomic # 7 Polarization: -54.45 SS G_CDS: -1.03 Total: -55.47 kcal Atomic # 8 Polarization: -23.62 SS G_CDS: 0.17 Total: -23.45 kcal Atomic # 9 Polarization: -5.17 SS G_CDS: 0.07 Total: -5.10 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.88 -7.96 -40.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269293351.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.227 kcal (2) G-P(sol) polarization free energy of solvation -32.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds