Wall clock time and date at job start Wed Apr 1 2020 02:52:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 F 1.39895 * 109.47201 * 2 1 4 4 F 1.39908 * 109.46936 * 240.00041 * 2 1 3 5 5 C 1.53003 * 109.47344 * 120.00157 * 2 1 3 6 6 C 1.50692 * 115.54850 * 294.29742 * 5 2 1 7 7 O 1.21278 * 120.00383 * 113.85718 * 6 5 2 8 8 N 1.34778 * 119.99829 * 293.85014 * 6 5 2 9 9 C 1.46507 * 119.99925 * 185.24343 * 8 6 5 10 10 C 1.52995 * 109.46979 * 180.02562 * 9 8 6 11 11 H 1.09004 * 112.78737 * 284.18790 * 10 9 8 12 12 C 1.53511 * 113.47604 * 153.38447 * 10 9 8 13 13 C 1.53512 * 83.57506 * 219.20747 * 12 10 9 14 14 N 1.47473 * 113.48015 * 55.00248 * 10 9 8 15 15 C 1.46901 * 111.00192 * 253.46976 * 14 10 9 16 16 C 1.50706 * 109.47266 * 198.51025 * 15 14 10 17 17 O 1.21290 * 119.99803 * 358.91902 * 16 15 14 18 18 N 1.34776 * 119.99694 * 178.91629 * 16 15 14 19 19 C 1.37103 * 119.99763 * 179.97438 * 18 16 15 20 20 H 1.08003 * 119.99499 * 0.02562 * 19 18 16 21 21 C 1.38939 * 120.00223 * 179.97438 * 19 18 16 22 22 N 1.31422 * 120.00022 * 359.72964 * 21 19 18 23 23 Si 1.86800 * 120.00408 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47198 * 60.00087 * 23 21 19 25 25 H 1.48493 * 109.47215 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.46969 * 300.00010 * 23 21 19 27 27 C 1.52998 * 117.49751 * 79.96634 * 5 2 1 28 28 C 1.53000 * 117.49754 * 148.62519 * 5 2 1 29 29 H 1.09003 * 109.46774 * 305.30901 * 1 2 3 30 30 H 1.08992 * 109.47103 * 65.30979 * 1 2 3 31 31 H 1.09000 * 109.47205 * 185.31573 * 1 2 3 32 32 H 0.96998 * 120.00372 * 5.25314 * 8 6 5 33 33 H 1.08999 * 109.46934 * 60.00482 * 9 8 6 34 34 H 1.09000 * 109.47208 * 300.00992 * 9 8 6 35 35 H 1.08997 * 114.17313 * 105.56033 * 12 10 9 36 36 H 1.08998 * 114.17312 * 332.85131 * 12 10 9 37 37 H 1.09000 * 113.47381 * 271.25643 * 13 12 10 38 38 H 1.08997 * 113.53275 * 140.79993 * 13 12 10 39 39 H 1.09005 * 109.47109 * 78.50907 * 15 14 10 40 40 H 1.08996 * 109.47339 * 318.51233 * 15 14 10 41 41 H 0.96998 * 120.00127 * 0.02562 * 18 16 15 42 42 H 0.96997 * 120.00141 * 180.02562 * 22 21 19 43 43 H 1.09003 * 117.50062 * 215.00261 * 27 5 2 44 44 H 1.09003 * 117.50199 * 0.02562 * 27 5 2 45 45 H 1.08999 * 117.50016 * 359.97438 * 28 5 2 46 46 H 1.08998 * 117.50068 * 144.98032 * 28 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9964 1.3189 0.0000 4 9 1.9963 -0.6595 -1.1424 5 6 2.0401 -0.7213 1.2492 6 6 1.7293 -0.0478 2.5610 7 8 0.9777 -0.5777 3.3516 8 7 2.2868 1.1434 2.8555 9 6 2.0771 1.7439 4.1753 10 6 2.8117 3.0840 4.2483 11 1 3.8888 2.9690 4.3702 12 6 2.1857 4.0711 5.2435 13 6 2.5191 5.1070 4.1608 14 7 2.4389 4.0180 3.1696 15 6 3.5146 4.1305 2.1756 16 6 3.3189 5.3848 1.3634 17 8 2.3653 6.1031 1.5772 18 7 4.2037 5.7084 0.3996 19 6 4.0254 6.8492 -0.3397 20 1 3.1761 7.4887 -0.1493 21 6 4.9376 7.1831 -1.3330 22 7 5.9744 6.4082 -1.5604 23 14 4.6951 8.7378 -2.3397 24 1 4.6994 9.9174 -1.4376 25 1 5.7970 8.8651 -3.3270 26 1 3.3958 8.6665 -3.0553 27 6 2.0527 -2.2510 1.2260 28 6 3.3680 -1.4731 1.1382 29 1 -0.3633 0.5940 0.8387 30 1 -0.3633 0.4292 -0.9336 31 1 -0.3633 -1.0232 0.0952 32 1 2.8267 1.6032 2.1938 33 1 2.4635 1.0751 4.9444 34 1 1.0111 1.9050 4.3361 35 1 2.7516 4.1929 6.1671 36 1 1.1181 3.9238 5.4066 37 1 3.5181 5.5318 4.2593 38 1 1.7485 5.8673 4.0339 39 1 3.4919 3.2632 1.5158 40 1 4.4772 4.1742 2.6852 41 1 4.9661 5.1338 0.2284 42 1 6.6116 6.6415 -2.2535 43 1 1.8362 -2.7704 2.1596 44 1 1.6980 -2.7437 0.3207 45 1 3.8781 -1.4542 0.1751 46 1 4.0171 -1.4803 2.0138 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269293351.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:06 Heat of formation + Delta-G solvation = -130.714507 kcal Electronic energy + Delta-G solvation = -31835.368333 eV Core-core repulsion = 27203.935295 eV Total energy + Delta-G solvation = -4631.433038 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.13732 -48.15389 -41.74886 -40.91732 -39.56154 -37.69676 -36.00122 -35.59755 -33.35304 -32.32831 -32.08559 -29.67339 -27.56314 -26.18275 -25.37701 -24.45011 -23.58484 -23.04501 -21.22409 -21.10831 -20.54172 -19.92778 -19.12155 -18.48036 -17.84097 -17.49334 -17.32514 -17.11394 -16.95328 -16.51736 -16.23613 -15.96863 -15.66073 -15.57146 -15.22356 -15.02196 -14.84709 -14.75888 -14.43998 -14.17473 -14.07685 -13.79805 -13.56447 -13.54627 -13.29276 -13.14800 -12.91358 -12.85372 -12.81035 -12.52653 -12.46826 -12.39065 -12.14667 -11.93275 -11.81107 -11.63665 -11.50671 -11.42984 -11.01650 -10.33756 -10.14482 -10.03370 -9.79630 -8.48026 -5.96818 1.27495 1.37776 1.40013 1.50734 1.92200 2.02074 2.27116 2.35516 2.57662 2.81765 3.03261 3.13872 3.18043 3.23615 3.45141 3.51573 3.59960 3.76508 3.82701 3.87461 4.04379 4.15196 4.24713 4.34151 4.40510 4.42123 4.49659 4.52860 4.59690 4.61577 4.64549 4.82226 4.86009 4.87293 4.89021 5.00450 5.05886 5.18341 5.29763 5.38887 5.43377 5.90193 6.07280 6.35976 6.57830 7.02787 7.10723 7.53175 8.08765 8.69092 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.010328 B = 0.003545 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2710.512175 B = 7897.111175 C = 9827.602106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.325 3.675 3 F -0.208 7.208 4 F -0.194 7.194 5 C -0.240 4.240 6 C 0.558 3.442 7 O -0.560 6.560 8 N -0.710 5.710 9 C 0.141 3.859 10 C 0.013 3.987 11 H 0.105 0.895 12 C -0.113 4.113 13 C 0.008 3.992 14 N -0.464 5.464 15 C 0.022 3.978 16 C 0.440 3.560 17 O -0.616 6.616 18 N -0.571 5.571 19 C -0.334 4.334 20 H 0.078 0.922 21 C -0.010 4.010 22 N -0.919 5.919 23 Si 0.991 3.009 24 H -0.271 1.271 25 H -0.269 1.269 26 H -0.274 1.274 27 C -0.108 4.108 28 C -0.135 4.135 29 H 0.077 0.923 30 H 0.090 0.910 31 H 0.112 0.888 32 H 0.405 0.595 33 H 0.091 0.909 34 H 0.064 0.936 35 H 0.109 0.891 36 H 0.098 0.902 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.097 0.903 40 H 0.082 0.918 41 H 0.395 0.605 42 H 0.278 0.722 43 H 0.118 0.882 44 H 0.127 0.873 45 H 0.119 0.881 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.925 -18.177 9.227 20.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.288 3.712 3 F -0.189 7.189 4 F -0.175 7.175 5 C -0.244 4.244 6 C 0.343 3.657 7 O -0.439 6.439 8 N -0.361 5.361 9 C 0.017 3.983 10 C -0.097 4.097 11 H 0.123 0.877 12 C -0.151 4.151 13 C -0.121 4.121 14 N -0.187 5.187 15 C -0.110 4.110 16 C 0.227 3.773 17 O -0.503 6.503 18 N -0.209 5.209 19 C -0.464 4.464 20 H 0.096 0.904 21 C -0.210 4.210 22 N -0.559 5.559 23 Si 0.814 3.186 24 H -0.196 1.196 25 H -0.194 1.194 26 H -0.199 1.199 27 C -0.145 4.145 28 C -0.172 4.172 29 H 0.096 0.904 30 H 0.109 0.891 31 H 0.130 0.870 32 H 0.241 0.759 33 H 0.109 0.891 34 H 0.082 0.918 35 H 0.128 0.872 36 H 0.116 0.884 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.115 0.885 40 H 0.100 0.900 41 H 0.229 0.771 42 H 0.087 0.913 43 H 0.136 0.864 44 H 0.145 0.855 45 H 0.137 0.863 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -4.474 -18.121 9.352 20.877 hybrid contribution 1.441 1.354 -1.124 2.275 sum -3.032 -16.767 8.228 18.922 Atomic orbital electron populations 1.22741 0.89722 1.06781 1.05369 1.20339 0.94654 0.74466 0.81696 1.93044 1.90790 1.38382 1.96661 1.93002 1.90701 1.80869 1.52915 1.22361 1.10412 0.98910 0.92743 1.19123 0.79375 0.80923 0.86255 1.90681 1.36374 1.65702 1.51106 1.46055 1.52521 1.20197 1.17300 1.21451 1.00583 0.92364 0.83895 1.23898 1.00441 0.92716 0.92598 0.87714 1.23158 1.02647 0.92602 0.96690 1.23524 1.01111 0.95672 0.91802 1.68894 1.37135 1.06320 1.06379 1.22410 0.95652 0.96125 0.96778 1.20643 0.84120 0.88937 0.83583 1.90498 1.33183 1.55215 1.71355 1.41912 1.24538 1.22991 1.31412 1.19603 1.10381 1.01583 1.14819 0.90440 1.26004 0.94757 1.02038 0.98218 1.69664 1.13212 1.39383 1.33686 0.85024 0.78048 0.77658 0.77831 1.19593 1.19360 1.19920 1.23192 0.98631 0.86645 1.06016 1.23326 0.89360 0.98597 1.05886 0.90390 0.89133 0.86980 0.75891 0.89129 0.91783 0.87242 0.88383 0.91746 0.91968 0.88542 0.90002 0.77096 0.91267 0.86408 0.85501 0.86300 0.86245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.87 9.19 71.98 0.66 -3.21 16 2 C 0.32 7.67 2.08 30.60 0.06 7.73 16 3 F -0.21 -6.31 15.62 44.97 0.70 -5.61 16 4 F -0.19 -4.54 15.65 44.97 0.70 -3.84 16 5 C -0.24 -4.95 1.70 -52.93 -0.09 -5.04 16 6 C 0.56 13.84 6.50 87.65 0.57 14.41 16 7 O -0.56 -16.52 16.72 -3.02 -0.05 -16.57 16 8 N -0.71 -16.93 5.30 -463.06 -2.46 -19.39 16 9 C 0.14 2.99 5.82 86.38 0.50 3.50 16 10 C 0.01 0.27 3.25 42.18 0.14 0.41 16 11 H 0.11 1.81 7.63 -2.38 -0.02 1.80 16 12 C -0.11 -2.19 8.00 30.94 0.25 -1.95 16 13 C 0.01 0.23 6.24 83.57 0.52 0.75 16 14 N -0.46 -14.43 5.78 -906.80 -5.24 -19.67 16 15 C 0.02 0.75 5.10 85.56 0.44 1.19 16 16 C 0.44 21.07 7.54 87.66 0.66 21.73 16 17 O -0.62 -34.26 14.74 -3.06 -0.05 -34.31 16 18 N -0.57 -29.53 5.29 -306.98 -1.62 -31.15 16 19 C -0.33 -19.13 9.68 84.04 0.81 -18.32 16 20 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16 21 C -0.01 -0.55 5.50 84.92 0.47 -0.08 16 22 N -0.92 -49.65 13.05 21.66 0.28 -49.37 16 23 Si 0.99 43.19 29.55 68.60 2.03 45.22 16 24 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 25 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 26 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 27 C -0.11 -1.61 9.52 30.62 0.29 -1.32 16 28 C -0.13 -2.09 9.66 30.62 0.30 -1.80 16 29 H 0.08 1.80 7.89 -2.39 -0.02 1.78 16 30 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.40 10.08 5.18 -92.71 -0.48 9.59 16 33 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.06 1.54 7.87 -2.39 -0.02 1.53 16 35 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.10 1.88 7.94 -2.39 -0.02 1.86 16 37 H 0.06 1.89 7.84 -2.39 -0.02 1.88 16 38 H 0.06 2.22 7.88 -2.39 -0.02 2.20 16 39 H 0.10 3.10 6.56 -2.38 -0.02 3.08 16 40 H 0.08 2.36 7.56 -2.39 -0.02 2.34 16 41 H 0.40 19.43 7.90 -92.71 -0.73 18.69 16 42 H 0.28 14.09 8.31 -92.71 -0.77 13.32 16 43 H 0.12 1.73 8.01 -2.39 -0.02 1.71 16 44 H 0.13 1.50 7.95 -2.39 -0.02 1.48 16 45 H 0.12 1.77 7.62 -2.39 -0.02 1.76 16 46 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -72.95 386.78 -0.30 -73.25 By element: Atomic # 1 Polarization: 43.60 SS G_CDS: -0.18 Total: 43.42 kcal Atomic # 6 Polarization: 12.44 SS G_CDS: 5.58 Total: 18.02 kcal Atomic # 7 Polarization: -110.54 SS G_CDS: -9.03 Total: -119.58 kcal Atomic # 8 Polarization: -50.78 SS G_CDS: -0.10 Total: -50.87 kcal Atomic # 9 Polarization: -10.85 SS G_CDS: 1.41 Total: -9.45 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -72.95 -0.30 -73.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269293351.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.467 kcal (2) G-P(sol) polarization free energy of solvation -72.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds