Wall clock time and date at job start Wed Apr 1 2020 03:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47616 * 2 1 4 4 N 1.46495 * 109.47314 * 179.97438 * 3 2 1 5 5 C 1.34779 * 119.99686 * 180.02562 * 4 3 2 6 6 O 1.21585 * 120.00323 * 359.97438 * 5 4 3 7 7 N 1.34778 * 119.99823 * 180.02562 * 5 4 3 8 8 C 1.46687 * 125.30928 * 179.97438 * 7 5 4 9 9 C 1.54898 * 107.24268 * 197.54362 * 8 7 5 10 10 F 1.39902 * 113.99299 * 210.18864 * 9 8 7 11 11 C 1.54071 * 109.39717 * 81.50862 * 9 8 7 12 12 N 1.46770 * 105.57578 * 225.46270 * 11 9 8 13 13 C 1.46496 * 124.34832 * 197.18412 * 12 11 9 14 14 C 1.52998 * 109.47238 * 269.72852 * 13 12 11 15 15 C 1.50706 * 109.47348 * 179.97438 * 14 13 12 16 16 H 1.08000 * 119.99302 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00436 * 179.72505 * 15 14 13 18 18 N 1.31514 * 120.00481 * 180.02562 * 17 15 14 19 19 Si 1.86801 * 119.99745 * 359.97438 * 17 15 14 20 20 H 1.48504 * 109.47209 * 90.00365 * 19 17 15 21 21 H 1.48506 * 109.47294 * 210.00213 * 19 17 15 22 22 H 1.48501 * 109.47275 * 330.00116 * 19 17 15 23 23 C 1.34387 * 111.30995 * 16.92366 * 12 11 9 24 24 O 1.21277 * 124.89411 * 180.40230 * 23 12 11 25 25 C 1.51374 * 110.21220 * 0.37486 * 23 12 11 26 26 F 1.39897 * 112.77970 * 220.26048 * 25 23 12 27 27 C 1.46558 * 125.30666 * 0.02562 * 7 5 4 28 28 H 1.09002 * 109.47668 * 300.00614 * 1 2 3 29 29 H 1.09007 * 109.46935 * 60.00227 * 1 2 3 30 30 H 1.09001 * 109.47585 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47161 * 239.99266 * 2 1 3 32 32 H 1.09007 * 109.46935 * 119.99773 * 2 1 3 33 33 H 1.09000 * 109.46736 * 59.99421 * 3 2 1 34 34 H 1.09002 * 109.46917 * 300.00336 * 3 2 1 35 35 H 0.96994 * 120.00093 * 359.97438 * 4 3 2 36 36 H 1.08998 * 109.97171 * 317.35050 * 8 7 5 37 37 H 1.08994 * 109.97040 * 78.58207 * 8 7 5 38 38 H 1.09000 * 110.31064 * 106.37293 * 11 9 8 39 39 H 1.09004 * 110.08864 * 344.43849 * 11 9 8 40 40 H 1.09000 * 109.47435 * 149.72756 * 13 12 11 41 41 H 1.09002 * 109.46784 * 29.72391 * 13 12 11 42 42 H 1.09001 * 109.47671 * 59.99927 * 14 13 12 43 43 H 1.08998 * 109.47454 * 299.99925 * 14 13 12 44 44 H 0.96995 * 120.00207 * 179.97438 * 18 17 15 45 45 H 1.09000 * 109.73443 * 58.97543 * 27 7 5 46 46 H 1.09005 * 109.73554 * 298.36031 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1789 2.6096 0.0012 6 8 3.5711 3.6626 0.0008 7 7 5.5267 2.6095 0.0013 8 6 6.3746 3.8065 0.0014 9 6 7.7910 3.3659 -0.4445 10 9 8.8244 4.1336 0.1034 11 6 7.8365 3.2686 -1.9815 12 7 8.5154 2.0012 -2.2762 13 6 9.0990 1.6588 -3.5755 14 6 8.0480 0.9565 -4.4375 15 6 8.6482 0.6048 -5.7745 16 1 9.6763 0.8574 -5.9880 17 6 7.8864 -0.0440 -6.7230 18 7 8.4102 -0.3513 -7.8894 19 14 6.1104 -0.4877 -6.3507 20 1 5.2240 0.6301 -6.7631 21 1 5.7396 -1.7155 -7.0991 22 1 5.9558 -0.7304 -4.8938 23 6 8.5380 1.1974 -1.1995 24 8 9.0431 0.0953 -1.1670 25 6 7.8426 1.8660 -0.0329 26 9 8.5017 1.6562 1.1831 27 6 6.3737 1.4135 0.0002 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5140 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 3.9900 0.6023 0.0013 36 1 5.9749 4.5459 -0.6926 37 1 6.4242 4.2275 1.0056 38 1 8.4002 4.1039 -2.3970 39 1 6.8243 3.2573 -2.3860 40 1 9.9505 0.9946 -3.4277 41 1 9.4304 2.5686 -4.0760 42 1 7.1964 1.6206 -4.5854 43 1 7.7165 0.0467 -3.9371 44 1 7.8744 -0.8081 -8.5566 45 1 6.1549 0.8084 -0.8796 46 1 6.1887 0.8306 0.9025 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273635582.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:43:50 Heat of formation + Delta-G solvation = -165.688347 kcal Electronic energy + Delta-G solvation = -31926.878527 eV Core-core repulsion = 27293.928909 eV Total energy + Delta-G solvation = -4632.949617 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.71756 -48.71854 -42.20889 -41.01401 -38.69580 -37.33662 -36.77496 -35.43789 -33.95801 -33.26059 -31.28127 -31.13276 -28.13114 -27.20919 -26.75318 -25.00076 -23.11752 -22.64795 -22.38140 -21.46018 -21.13708 -19.54780 -19.08304 -18.48432 -18.23894 -17.61123 -17.41255 -17.21720 -16.83615 -16.48091 -16.37647 -16.27677 -16.04631 -15.74699 -15.58960 -15.42878 -15.10229 -14.87923 -14.69408 -14.58516 -14.39159 -14.27142 -13.91293 -13.84255 -13.57958 -13.51930 -13.37165 -12.96810 -12.91523 -12.76600 -12.41179 -12.17364 -12.02695 -11.97526 -11.80364 -11.76111 -11.60069 -11.54146 -10.99777 -10.80600 -10.39676 -10.00818 -9.83609 -8.32900 -6.38405 0.95480 1.10182 1.31782 1.35057 1.45027 1.52627 1.88880 2.01357 2.31973 2.35499 2.42681 2.71279 2.81562 3.02611 3.05281 3.14024 3.71511 3.89607 4.08318 4.09660 4.14742 4.18942 4.29257 4.31281 4.34378 4.37979 4.46580 4.55296 4.67506 4.69040 4.71748 4.75257 4.87265 4.92896 5.16098 5.20126 5.24831 5.29786 5.34724 5.45583 5.58547 5.67864 5.78381 6.19149 6.63402 6.66634 6.70904 7.26623 7.30724 8.83295 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.007402 B = 0.004515 C = 0.003149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3782.047304 B = 6199.669532 C = 8890.686675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.131 4.131 3 C 0.136 3.864 4 N -0.734 5.734 5 C 0.730 3.270 6 O -0.612 6.612 7 N -0.626 5.626 8 C 0.124 3.876 9 C 0.094 3.906 10 F -0.159 7.159 11 C 0.083 3.917 12 N -0.600 5.600 13 C 0.147 3.853 14 C -0.016 4.016 15 C -0.533 4.533 16 H 0.041 0.959 17 C 0.011 3.989 18 N -0.945 5.945 19 Si 0.946 3.054 20 H -0.261 1.261 21 H -0.286 1.286 22 H -0.253 1.253 23 C 0.497 3.503 24 O -0.540 6.540 25 C 0.066 3.934 26 F -0.162 7.162 27 C 0.101 3.899 28 H 0.061 0.939 29 H 0.055 0.945 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.065 0.935 34 H 0.058 0.942 35 H 0.409 0.591 36 H 0.121 0.879 37 H 0.101 0.899 38 H 0.133 0.867 39 H 0.118 0.882 40 H 0.063 0.937 41 H 0.102 0.898 42 H 0.032 0.968 43 H 0.008 0.992 44 H 0.267 0.733 45 H 0.098 0.902 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.206 6.771 20.246 25.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.169 4.169 3 C 0.012 3.988 4 N -0.390 5.390 5 C 0.432 3.568 6 O -0.492 6.492 7 N -0.365 5.365 8 C 0.000 4.000 9 C 0.074 3.926 10 F -0.139 7.139 11 C -0.039 4.039 12 N -0.332 5.332 13 C 0.027 3.973 14 C -0.054 4.054 15 C -0.571 4.571 16 H 0.060 0.940 17 C -0.187 4.187 18 N -0.586 5.586 19 Si 0.769 3.231 20 H -0.185 1.185 21 H -0.212 1.212 22 H -0.177 1.177 23 C 0.281 3.719 24 O -0.417 6.417 25 C 0.043 3.957 26 F -0.142 7.142 27 C -0.023 4.023 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.098 0.902 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.245 0.755 36 H 0.139 0.861 37 H 0.119 0.881 38 H 0.151 0.849 39 H 0.136 0.864 40 H 0.081 0.919 41 H 0.120 0.880 42 H 0.050 0.950 43 H 0.026 0.974 44 H 0.076 0.924 45 H 0.116 0.884 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -13.454 6.879 20.047 25.104 hybrid contribution 0.386 -0.939 -0.284 1.054 sum -13.068 5.940 19.763 24.426 Atomic orbital electron populations 1.21676 0.93830 1.02758 1.02422 1.21718 0.97456 0.94221 1.03483 1.21393 0.76843 0.98564 1.01964 1.45174 1.08107 1.06771 1.78921 1.15294 0.79224 0.84684 0.77643 1.90944 1.66934 1.31704 1.59591 1.46846 1.03521 1.06899 1.79257 1.22155 0.84492 0.88067 1.05317 1.22717 0.87948 0.87367 0.94588 1.92968 1.58740 1.75563 1.86596 1.23017 1.01833 0.87841 0.91221 1.48390 1.55787 1.17492 1.11498 1.21441 0.95620 1.01049 0.79202 1.19767 0.96020 0.95904 0.93710 1.21246 0.99087 1.38206 0.98581 0.94029 1.25905 1.03280 0.94988 0.94498 1.70041 1.39058 1.42406 1.07054 0.85727 0.79651 0.78351 0.79335 1.18538 1.21161 1.17665 1.20826 0.80205 0.85403 0.85441 1.90766 1.46807 1.20388 1.83696 1.22552 0.94169 0.97482 0.81543 1.92957 1.82117 1.95723 1.43368 1.22129 0.84414 0.89239 1.06552 0.91964 0.92571 0.91382 0.91104 0.90178 0.91648 0.92398 0.75545 0.86052 0.88132 0.84906 0.86366 0.91898 0.87965 0.94966 0.97354 0.92359 0.88409 0.86070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.91 71.98 0.71 -0.65 16 2 C -0.13 -1.32 6.05 30.59 0.19 -1.14 16 3 C 0.14 2.00 5.67 86.38 0.49 2.49 16 4 N -0.73 -11.92 5.51 -478.54 -2.64 -14.55 16 5 C 0.73 15.59 8.47 179.05 1.52 17.10 16 6 O -0.61 -17.34 16.63 -3.98 -0.07 -17.41 16 7 N -0.63 -11.35 3.31 -833.99 -2.76 -14.11 16 8 C 0.12 1.99 5.93 86.99 0.52 2.50 16 9 C 0.09 1.80 1.98 -8.88 -0.02 1.78 16 10 F -0.16 -3.34 17.12 44.97 0.77 -2.57 16 11 C 0.08 1.63 6.58 86.69 0.57 2.20 16 12 N -0.60 -17.52 2.93 -818.71 -2.40 -19.92 16 13 C 0.15 5.27 5.87 86.38 0.51 5.78 16 14 C -0.02 -0.68 4.37 29.85 0.13 -0.55 16 15 C -0.53 -29.19 9.66 25.60 0.25 -28.94 16 16 H 0.04 2.49 7.99 -2.91 -0.02 2.46 16 17 C 0.01 0.62 5.47 84.65 0.46 1.09 16 18 N -0.95 -57.62 13.96 21.45 0.30 -57.32 16 19 Si 0.95 42.57 27.47 68.60 1.88 44.45 16 20 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 21 H -0.29 -12.80 7.11 99.48 0.71 -12.10 16 22 H -0.25 -10.68 6.53 99.48 0.65 -10.03 16 23 C 0.50 15.80 6.79 87.93 0.60 16.40 16 24 O -0.54 -21.94 17.59 -3.02 -0.05 -22.00 16 25 C 0.07 1.55 1.76 -10.17 -0.02 1.53 16 26 F -0.16 -4.25 16.98 44.97 0.76 -3.48 16 27 C 0.10 1.82 5.45 86.62 0.47 2.29 16 28 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 30 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.08 0.66 8.14 -2.38 -0.02 0.64 16 33 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.41 4.98 7.43 -92.71 -0.69 4.29 16 36 H 0.12 1.70 7.92 -2.39 -0.02 1.68 16 37 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.13 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.12 2.05 7.68 -2.38 -0.02 2.03 16 40 H 0.06 2.53 7.92 -2.39 -0.02 2.51 16 41 H 0.10 3.23 8.14 -2.39 -0.02 3.21 16 42 H 0.03 1.30 7.58 -2.39 -0.02 1.28 16 43 H 0.01 0.38 7.18 -2.39 -0.02 0.36 16 44 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 45 H 0.10 1.82 7.60 -2.39 -0.02 1.80 16 46 H 0.12 1.70 8.10 -2.38 -0.02 1.68 16 Total: -1.00 -75.81 385.34 2.43 -73.38 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: 0.26 Total: 11.65 kcal Atomic # 6 Polarization: 15.52 SS G_CDS: 6.37 Total: 21.89 kcal Atomic # 7 Polarization: -98.41 SS G_CDS: -7.50 Total: -105.91 kcal Atomic # 8 Polarization: -39.29 SS G_CDS: -0.12 Total: -39.41 kcal Atomic # 9 Polarization: -7.59 SS G_CDS: 1.53 Total: -6.06 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 1.88 Total: 44.45 kcal Total: -75.81 2.43 -73.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273635582.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.312 kcal (2) G-P(sol) polarization free energy of solvation -75.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds