Wall clock time and date at job start Wed Apr 1 2020 03:00:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.47150 * 2 1 4 4 C 1.52997 * 109.47471 * 239.99888 * 2 1 3 5 5 C 1.50697 * 109.47288 * 119.99700 * 2 1 3 6 6 C 1.38239 * 119.99743 * 60.00156 * 5 2 1 7 7 C 1.38241 * 119.99752 * 179.97438 * 6 5 2 8 8 C 1.38233 * 119.99907 * 0.02562 * 7 6 5 9 9 C 1.50710 * 119.99875 * 179.97438 * 8 7 6 10 10 C 1.50696 * 115.54527 * 325.58341 * 9 8 7 11 11 O 1.20833 * 119.99655 * 214.32531 * 10 9 8 12 12 O 1.34231 * 120.00640 * 34.60802 * 10 9 8 13 13 C 1.45193 * 117.00126 * 179.71955 * 12 10 9 14 14 C 1.50706 * 109.46845 * 180.02562 * 13 12 10 15 15 O 1.21293 * 119.99979 * 359.97438 * 14 13 12 16 16 N 1.34775 * 120.00023 * 180.02562 * 14 13 12 17 17 C 1.37102 * 120.00037 * 179.97438 * 16 14 13 18 18 H 1.08001 * 119.99819 * 0.02562 * 17 16 14 19 19 C 1.38945 * 119.99865 * 180.02562 * 17 16 14 20 20 N 1.31413 * 120.00178 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99998 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47334 * 59.99505 * 21 19 17 23 23 H 1.48505 * 109.47518 * 179.97438 * 21 19 17 24 24 H 1.48508 * 109.46814 * 299.99654 * 21 19 17 25 25 C 1.52997 * 117.51765 * 111.28620 * 9 8 7 26 26 C 1.52994 * 117.49816 * 179.91554 * 9 8 7 27 27 C 1.38237 * 120.00557 * 0.25569 * 8 7 6 28 28 C 1.38238 * 119.99441 * 359.48804 * 27 8 7 29 29 H 1.08994 * 109.47163 * 300.00182 * 1 2 3 30 30 H 1.08994 * 109.47148 * 60.00750 * 1 2 3 31 31 H 1.09000 * 109.46577 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47018 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.46617 * 300.00114 * 3 2 1 34 34 H 1.08992 * 109.46773 * 59.99624 * 3 2 1 35 35 H 1.08999 * 109.47569 * 299.99822 * 4 2 1 36 36 H 1.09008 * 109.47160 * 60.00056 * 4 2 1 37 37 H 1.09003 * 109.47615 * 179.97438 * 4 2 1 38 38 H 1.07997 * 120.00197 * 0.02562 * 6 5 2 39 39 H 1.07994 * 119.99903 * 180.02562 * 7 6 5 40 40 H 1.08997 * 109.47488 * 299.99586 * 13 12 10 41 41 H 1.08997 * 109.47515 * 60.00401 * 13 12 10 42 42 H 0.97003 * 119.99738 * 359.97438 * 16 14 13 43 43 H 0.97007 * 119.99888 * 179.97438 * 20 19 17 44 44 H 1.08997 * 117.49467 * 214.97135 * 25 9 8 45 45 H 1.08999 * 117.49814 * 359.97438 * 25 9 8 46 46 H 1.09002 * 117.49781 * 359.97438 * 26 9 8 47 47 H 1.08997 * 117.49858 * 144.99919 * 26 9 8 48 48 H 1.07999 * 120.00364 * 179.72412 * 27 8 7 49 49 H 1.07994 * 119.99848 * 180.25064 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0323 -0.7103 1.2305 6 6 1.6984 -2.0338 1.4492 7 6 2.1597 -2.6856 2.5777 8 6 2.9544 -2.0137 3.4876 9 6 3.4568 -2.7241 4.7181 10 6 2.5172 -3.7433 5.3092 11 8 2.4772 -3.9055 6.5059 12 8 1.7289 -4.4749 4.5061 13 6 0.8537 -5.4418 5.1442 14 6 0.0512 -6.1638 4.0925 15 8 0.2019 -5.8900 2.9205 16 7 -0.8345 -7.1130 4.4543 17 6 -1.5649 -7.7694 3.4976 18 1 -1.4301 -7.5262 2.4540 19 6 -2.4785 -8.7476 3.8706 20 7 -2.6421 -9.0439 5.1404 21 14 -3.4731 -9.6425 2.5671 22 1 -2.5525 -10.3467 1.6387 23 1 -4.3688 -10.6310 3.2197 24 1 -4.2884 -8.6616 1.8065 25 6 4.9569 -3.0118 4.8053 26 6 4.3336 -1.9267 5.6856 27 6 3.2835 -0.6885 3.2718 28 6 2.8267 -0.0383 2.1407 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9563 0.8899 35 1 1.6768 -1.7489 -1.2492 36 1 1.6767 -0.2074 -2.1393 37 1 3.1301 -0.7209 -1.2494 38 1 1.0779 -2.5588 0.7382 39 1 1.8991 -3.7196 2.7484 40 1 1.4527 -6.1619 5.7015 41 1 0.1781 -4.9257 5.8264 42 1 -0.9553 -7.3316 5.3916 43 1 -3.2801 -9.7266 5.4008 44 1 5.2643 -3.9382 5.2903 45 1 5.5808 -2.6876 3.9724 46 1 4.5475 -0.8884 5.4319 47 1 4.2310 -2.1393 6.7497 48 1 3.9008 -0.1624 3.9849 49 1 3.0871 0.9958 1.9700 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318406752.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:58 Heat of formation + Delta-G solvation = -79.993166 kcal Electronic energy + Delta-G solvation = -30168.867361 eV Core-core repulsion = 26061.570545 eV Total energy + Delta-G solvation = -4107.296817 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.90971 -39.73957 -38.37095 -37.56395 -36.30611 -35.29644 -34.00537 -31.39968 -31.06416 -29.85599 -28.57191 -27.50947 -27.34640 -25.45136 -24.30989 -23.01206 -22.66033 -21.83267 -19.99255 -19.61528 -19.14841 -18.12427 -17.90525 -16.53999 -16.49340 -16.17692 -15.66163 -15.15178 -14.96709 -14.68021 -14.54752 -14.39393 -14.07113 -13.96488 -13.70961 -13.47287 -13.39528 -12.99755 -12.87606 -12.40201 -12.32232 -12.22773 -12.08338 -11.91879 -11.81918 -11.73306 -11.62947 -11.28217 -11.15794 -11.11977 -10.99456 -10.74948 -10.53739 -10.49811 -10.43504 -10.41414 -10.37658 -10.28316 -9.60014 -8.77012 -8.52809 -8.39937 -8.08913 -6.50496 -3.92607 1.30002 1.54646 2.18846 2.61458 3.14749 3.22210 3.26654 3.51030 3.73331 3.90012 4.10040 4.29029 4.47772 4.50373 4.58141 4.65151 4.76687 4.86586 4.95445 5.07346 5.14586 5.16000 5.21677 5.37336 5.40161 5.41625 5.49953 5.54805 5.58921 5.61881 5.67359 5.69163 5.70545 5.77238 5.79701 5.85791 5.86147 5.96258 6.04598 6.09785 6.15524 6.18954 6.26018 6.55424 6.59585 6.74670 6.80843 7.15061 7.46913 7.83227 7.95487 8.47619 9.06183 9.38644 9.88221 10.66670 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.009379 B = 0.003023 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2984.826984 B = 9260.768041 C =11820.389496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.030 4.030 3 C -0.142 4.142 4 C -0.139 4.139 5 C -0.072 4.072 6 C -0.108 4.108 7 C -0.093 4.093 8 C -0.063 4.063 9 C -0.096 4.096 10 C 0.499 3.501 11 O -0.510 6.510 12 O -0.316 6.316 13 C 0.055 3.945 14 C 0.440 3.560 15 O -0.575 6.575 16 N -0.552 5.552 17 C -0.303 4.303 18 H 0.106 0.894 19 C 0.025 3.975 20 N -0.897 5.897 21 Si 0.934 3.066 22 H -0.272 1.272 23 H -0.283 1.283 24 H -0.272 1.272 25 C -0.136 4.136 26 C -0.140 4.140 27 C -0.114 4.114 28 C -0.128 4.128 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.060 0.940 36 H 0.056 0.944 37 H 0.055 0.945 38 H 0.124 0.876 39 H 0.157 0.843 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.395 0.605 43 H 0.274 0.726 44 H 0.106 0.894 45 H 0.112 0.888 46 H 0.112 0.888 47 H 0.113 0.887 48 H 0.121 0.879 49 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.684 18.481 -4.252 22.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.030 4.030 3 C -0.199 4.199 4 C -0.196 4.196 5 C -0.072 4.072 6 C -0.126 4.126 7 C -0.110 4.110 8 C -0.063 4.063 9 C -0.098 4.098 10 C 0.342 3.658 11 O -0.399 6.399 12 O -0.230 6.230 13 C -0.022 4.022 14 C 0.224 3.776 15 O -0.459 6.459 16 N -0.189 5.189 17 C -0.432 4.432 18 H 0.124 0.876 19 C -0.177 4.177 20 N -0.538 5.538 21 Si 0.760 3.240 22 H -0.197 1.197 23 H -0.209 1.209 24 H -0.197 1.197 25 C -0.173 4.173 26 C -0.177 4.177 27 C -0.132 4.132 28 C -0.146 4.146 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.142 0.858 39 H 0.175 0.825 40 H 0.104 0.896 41 H 0.104 0.896 42 H 0.228 0.772 43 H 0.084 0.916 44 H 0.124 0.876 45 H 0.130 0.870 46 H 0.130 0.870 47 H 0.132 0.868 48 H 0.138 0.862 49 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 12.602 18.433 -4.599 22.798 hybrid contribution -0.786 -0.789 0.290 1.151 sum 11.816 17.645 -4.309 21.668 Atomic orbital electron populations 1.21904 0.93615 1.02567 1.01669 1.19497 0.95807 0.94802 0.92864 1.21950 1.01014 0.95179 1.01779 1.21895 1.01087 1.00609 0.96032 1.19865 0.97394 0.94188 0.95705 1.21055 0.99876 0.93911 0.97795 1.21762 0.94647 1.02050 0.92532 1.18714 1.00035 0.93666 0.93923 1.19622 0.92095 0.99607 0.98444 1.22291 0.78804 0.79709 0.84991 1.90646 1.66419 1.66642 1.16201 1.86555 1.49366 1.47630 1.39443 1.22823 0.92728 0.90856 0.95837 1.19273 0.84734 0.84527 0.89037 1.90546 1.69381 1.67598 1.18405 1.41692 1.34379 1.32510 1.10343 1.19672 1.16839 1.15935 0.90717 0.87643 1.25306 0.97841 0.97437 0.97130 1.69609 1.36212 1.32637 1.15333 0.85868 0.79245 0.78922 0.79916 1.19746 1.20869 1.19740 1.23192 0.90326 1.01162 1.02636 1.23246 0.99232 0.97422 0.97804 1.20908 1.00885 0.93631 0.97785 1.21004 0.99242 0.99895 0.94429 0.92529 0.92485 0.91992 0.92377 0.92531 0.92351 0.92070 0.92502 0.92592 0.85789 0.82532 0.89552 0.89552 0.77180 0.91571 0.87598 0.87018 0.87021 0.86829 0.86157 0.85836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 8.29 37.16 0.31 -1.08 16 2 C -0.03 -0.29 0.85 -155.66 -0.13 -0.42 16 3 C -0.14 -1.12 7.13 37.16 0.27 -0.85 16 4 C -0.14 -1.28 8.29 37.16 0.31 -0.97 16 5 C -0.07 -0.85 4.76 -104.62 -0.50 -1.35 16 6 C -0.11 -1.54 8.71 -39.58 -0.34 -1.88 16 7 C -0.09 -1.45 9.08 -39.58 -0.36 -1.81 16 8 C -0.06 -0.86 5.44 -104.62 -0.57 -1.43 16 9 C -0.10 -1.27 2.50 -156.81 -0.39 -1.67 16 10 C 0.50 8.32 7.46 36.00 0.27 8.59 16 11 O -0.51 -9.18 16.01 -18.76 -0.30 -9.48 16 12 O -0.32 -5.92 6.44 -45.90 -0.30 -6.21 16 13 C 0.05 1.05 5.94 36.01 0.21 1.27 16 14 C 0.44 10.45 7.86 -10.98 -0.09 10.36 16 15 O -0.58 -15.44 16.08 -14.11 -0.23 -15.66 16 16 N -0.55 -13.87 5.29 -10.96 -0.06 -13.93 16 17 C -0.30 -8.29 9.68 -14.93 -0.14 -8.43 16 18 H 0.11 3.00 7.16 -52.49 -0.38 2.62 16 19 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 20 N -0.90 -24.06 13.05 55.50 0.72 -23.33 16 21 Si 0.93 20.65 29.55 -169.99 -5.02 15.62 16 22 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 23 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 24 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 25 C -0.14 -1.38 9.94 -26.73 -0.27 -1.65 16 26 C -0.14 -1.40 9.38 -26.74 -0.25 -1.65 16 27 C -0.11 -1.29 9.39 -39.58 -0.37 -1.66 16 28 C -0.13 -1.39 8.98 -39.58 -0.36 -1.75 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.67 7.39 -51.93 -0.38 0.29 16 32 H 0.06 0.43 7.51 -51.93 -0.39 0.04 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 0.45 7.51 -51.93 -0.39 0.06 16 35 H 0.06 0.61 7.39 -51.93 -0.38 0.23 16 36 H 0.06 0.45 8.14 -51.92 -0.42 0.03 16 37 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.12 1.76 7.10 -52.49 -0.37 1.38 16 39 H 0.16 2.91 5.30 -52.49 -0.28 2.63 16 40 H 0.09 1.51 8.13 -51.93 -0.42 1.09 16 41 H 0.09 1.54 8.13 -51.93 -0.42 1.12 16 42 H 0.39 9.46 7.90 -40.82 -0.32 9.14 16 43 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 44 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 46 H 0.11 0.85 6.08 -51.93 -0.32 0.53 16 47 H 0.11 1.18 7.67 -51.93 -0.40 0.78 16 48 H 0.12 1.05 5.93 -52.49 -0.31 0.74 16 49 H 0.12 1.07 5.89 -52.49 -0.31 0.76 16 LS Contribution 401.32 15.07 6.05 6.05 Total: -1.00 -31.33 401.32 -8.81 -40.14 By element: Atomic # 1 Polarization: 19.79 SS G_CDS: -7.17 Total: 12.62 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: -2.50 Total: -5.80 kcal Atomic # 7 Polarization: -37.93 SS G_CDS: 0.67 Total: -37.26 kcal Atomic # 8 Polarization: -30.54 SS G_CDS: -0.82 Total: -31.36 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -31.33 -8.81 -40.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318406752.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.857 kcal (2) G-P(sol) polarization free energy of solvation -31.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds