Wall clock time and date at job start Wed Apr 1 2020 04:34:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 110.05221 * 2 1 4 4 O 1.43895 * 109.91223 * 238.81767 * 2 1 3 5 5 C 1.44429 * 107.00331 * 266.97961 * 4 2 1 6 6 C 1.55103 * 103.55368 * 320.27518 * 5 4 2 7 7 C 1.53569 * 109.90515 * 121.17939 * 2 1 3 8 8 C 1.52661 * 110.39062 * 235.58144 * 7 2 1 9 9 N 1.47275 * 108.40070 * 173.63062 * 8 7 2 10 10 C 1.34774 * 121.04482 * 130.41492 * 9 8 7 11 11 O 1.21284 * 120.00357 * 0.02562 * 10 9 8 12 12 C 1.50703 * 119.99936 * 179.97438 * 10 9 8 13 13 H 1.09003 * 109.46734 * 59.99767 * 12 10 9 14 14 C 1.50703 * 109.47223 * 300.00123 * 12 10 9 15 15 H 1.07995 * 120.00017 * 333.09752 * 14 12 10 16 16 C 1.37872 * 119.99942 * 153.09516 * 14 12 10 17 17 N 1.31510 * 120.00375 * 5.74104 * 16 14 12 18 18 Si 1.86802 * 119.99834 * 185.73497 * 16 14 12 19 19 H 1.48500 * 109.47048 * 90.00582 * 18 16 14 20 20 H 1.48496 * 109.47169 * 210.00217 * 18 16 14 21 21 H 1.48493 * 109.47333 * 330.00284 * 18 16 14 22 22 C 1.50696 * 109.47302 * 179.97438 * 12 10 9 23 23 C 1.38239 * 119.99571 * 66.12715 * 22 12 10 24 24 C 1.38238 * 119.99857 * 179.97438 * 23 22 12 25 25 C 1.38235 * 119.99932 * 0.09767 * 24 23 22 26 26 C 1.38236 * 119.99827 * 359.97438 * 25 24 23 27 27 C 1.38226 * 120.00305 * 246.25658 * 22 12 10 28 28 C 1.47159 * 117.90678 * 310.68741 * 9 8 7 29 29 C 1.52865 * 108.74171 * 50.73896 * 28 9 8 30 30 O 1.42237 * 110.63822 * 358.60227 * 7 2 1 31 31 H 1.08997 * 109.47039 * 298.82149 * 1 2 3 32 32 H 1.09002 * 109.46660 * 58.81948 * 1 2 3 33 33 H 1.09000 * 109.47318 * 178.81681 * 1 2 3 34 34 H 1.09001 * 110.60992 * 78.80064 * 5 4 2 35 35 H 1.09000 * 110.60465 * 201.76174 * 5 4 2 36 36 H 1.09000 * 110.93626 * 278.45075 * 6 5 4 37 37 H 1.09005 * 110.93122 * 154.77946 * 6 5 4 38 38 H 1.09000 * 109.67631 * 53.89897 * 8 7 2 39 39 H 1.09003 * 109.67528 * 293.36459 * 8 7 2 40 40 H 0.96998 * 120.00674 * 179.97438 * 17 16 14 41 41 H 1.07998 * 120.00056 * 0.08549 * 23 22 12 42 42 H 1.08002 * 120.00212 * 180.36565 * 24 23 22 43 43 H 1.08000 * 120.00398 * 179.97438 * 25 24 23 44 44 H 1.08005 * 119.99820 * 179.97438 * 26 25 24 45 45 H 1.08002 * 120.00486 * 359.97438 * 27 22 12 46 46 H 1.08991 * 109.63204 * 170.50188 * 28 9 8 47 47 H 1.09001 * 109.62902 * 291.08958 * 28 9 8 48 48 H 1.09003 * 109.58494 * 187.39546 * 29 28 9 49 49 H 1.09003 * 109.41653 * 67.31138 * 29 28 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9037 1.0239 0.0000 4 8 2.0201 -0.7005 -1.1575 5 6 2.2324 -2.0732 -0.7619 6 6 2.8297 -1.9523 0.6644 7 6 2.0529 -0.7476 1.2354 8 6 2.9945 0.1460 2.0388 9 7 3.3470 -0.5529 3.2863 10 6 4.6311 -0.6701 3.6783 11 8 5.5179 -0.1956 3.0004 12 6 4.9651 -1.3897 4.9596 13 1 4.6128 -2.4195 4.9004 14 6 4.2935 -0.6947 6.1159 15 1 4.0658 0.3592 6.0539 16 6 3.9697 -1.4043 7.2528 17 7 4.3467 -2.6582 7.3750 18 14 2.9955 -0.5844 8.6197 19 1 1.5435 -0.7847 8.3814 20 1 3.3706 -1.1862 9.9244 21 1 3.2980 0.8692 8.6398 22 6 6.4579 -1.3811 5.1661 23 6 7.1166 -0.1881 5.3981 24 6 8.4858 -0.1802 5.5881 25 6 9.1966 -1.3651 5.5442 26 6 8.5379 -2.5578 5.3107 27 6 7.1687 -2.5657 5.1210 28 6 2.2535 -1.1245 4.0882 29 6 1.3691 -1.9756 3.1769 30 8 0.9724 -1.1984 2.0431 31 1 -0.3633 0.4954 0.9003 32 1 -0.3633 0.5321 -0.8792 33 1 -0.3634 -1.0274 -0.0212 34 1 1.2874 -2.6160 -0.7374 35 1 2.9388 -2.5611 -1.4335 36 1 3.8984 -1.7421 0.6226 37 1 2.6338 -2.8530 1.2463 38 1 2.4966 1.0869 2.2732 39 1 3.8971 0.3421 1.4601 40 1 4.1193 -3.1574 8.1750 41 1 6.5613 0.7375 5.4327 42 1 8.9998 0.7511 5.7752 43 1 10.2663 -1.3590 5.6922 44 1 9.0933 -3.4835 5.2760 45 1 6.6543 -3.4976 4.9381 46 1 2.6676 -1.7478 4.8806 47 1 1.6595 -0.3207 4.5232 48 1 0.4839 -2.2986 3.7247 49 1 1.9287 -2.8490 2.8418 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361430947.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:05 Heat of formation + Delta-G solvation = -90.823246 kcal Electronic energy + Delta-G solvation = -32284.437476 eV Core-core repulsion = 28176.671031 eV Total energy + Delta-G solvation = -4107.766444 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.88059 -39.17169 -37.96615 -37.17371 -34.30071 -33.72910 -32.33431 -31.31457 -31.07058 -29.93012 -29.00650 -28.06649 -26.81145 -24.52391 -23.75344 -23.16327 -21.70622 -21.57037 -20.75113 -19.74004 -18.41684 -17.07148 -16.83442 -16.60445 -16.31297 -15.99584 -15.48332 -15.34177 -14.65449 -14.47475 -14.31332 -14.19639 -14.07312 -13.86182 -13.79884 -13.21703 -13.05611 -12.78722 -12.60290 -12.39831 -12.29606 -12.00007 -11.86510 -11.71393 -11.65630 -11.46885 -11.26599 -11.10943 -11.05999 -11.04441 -10.78877 -10.46590 -10.32577 -10.26924 -10.04728 -9.81971 -9.72850 -9.49126 -8.83091 -8.67647 -7.99883 -7.93332 -7.60828 -6.34622 -4.40801 2.38870 2.40908 3.12335 3.22259 3.24147 3.49033 3.55399 3.67300 3.81752 4.20780 4.47527 4.65506 4.79020 4.81169 5.00195 5.08832 5.15140 5.25983 5.27874 5.30115 5.47303 5.53394 5.57420 5.68753 5.72503 5.73799 5.79080 5.83545 5.88935 5.94133 5.96061 6.01244 6.13158 6.18499 6.21554 6.27760 6.46564 6.49175 6.58969 6.72470 6.79574 6.93642 7.07683 7.10950 7.29037 7.37591 7.44713 7.55713 7.70182 7.92738 7.98498 8.12765 8.60077 9.05284 9.23152 10.72621 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011387 B = 0.004244 C = 0.003426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2458.426516 B = 6596.735446 C = 8169.840097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.090 3.910 3 H 0.103 0.897 4 O -0.371 6.371 5 C 0.051 3.949 6 C -0.178 4.178 7 C 0.080 3.920 8 C 0.096 3.904 9 N -0.611 5.611 10 C 0.532 3.468 11 O -0.562 6.562 12 C 0.057 3.943 13 H 0.080 0.920 14 C -0.515 4.515 15 H 0.063 0.937 16 C 0.075 3.925 17 N -0.873 5.873 18 Si 0.893 3.107 19 H -0.276 1.276 20 H -0.285 1.285 21 H -0.272 1.272 22 C -0.006 4.006 23 C -0.084 4.084 24 C -0.135 4.135 25 C -0.148 4.148 26 C -0.133 4.133 27 C -0.113 4.113 28 C 0.080 3.920 29 C 0.039 3.961 30 O -0.363 6.363 31 H 0.071 0.929 32 H 0.056 0.944 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.066 0.934 39 H 0.098 0.902 40 H 0.267 0.733 41 H 0.109 0.891 42 H 0.105 0.895 43 H 0.104 0.896 44 H 0.105 0.895 45 H 0.110 0.890 46 H 0.130 0.870 47 H 0.068 0.932 48 H 0.104 0.896 49 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.409 -0.234 -9.094 10.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.031 3.969 3 H 0.120 0.880 4 O -0.290 6.290 5 C -0.026 4.026 6 C -0.216 4.216 7 C 0.039 3.961 8 C -0.028 4.028 9 N -0.345 5.345 10 C 0.323 3.677 11 O -0.440 6.440 12 C 0.037 3.963 13 H 0.098 0.902 14 C -0.552 4.552 15 H 0.081 0.919 16 C -0.131 4.131 17 N -0.508 5.508 18 Si 0.720 3.280 19 H -0.202 1.202 20 H -0.210 1.210 21 H -0.196 1.196 22 C -0.007 4.007 23 C -0.102 4.102 24 C -0.153 4.153 25 C -0.167 4.167 26 C -0.151 4.151 27 C -0.132 4.132 28 C -0.043 4.043 29 C -0.038 4.038 30 O -0.282 6.282 31 H 0.090 0.910 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.110 0.890 36 H 0.106 0.894 37 H 0.106 0.894 38 H 0.085 0.915 39 H 0.116 0.884 40 H 0.077 0.923 41 H 0.128 0.872 42 H 0.123 0.877 43 H 0.122 0.878 44 H 0.123 0.877 45 H 0.128 0.872 46 H 0.147 0.853 47 H 0.086 0.914 48 H 0.122 0.878 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.083 -0.021 -9.552 10.820 hybrid contribution -0.304 0.149 1.395 1.436 sum -5.387 0.128 -8.157 9.776 Atomic orbital electron populations 1.21937 0.94362 1.02918 1.01919 1.22629 0.95178 0.96167 0.82882 0.87973 1.88946 1.86115 1.21097 1.32830 1.23519 0.99770 0.84212 0.95058 1.23674 1.01497 0.99507 0.96928 1.22622 0.87726 0.94185 0.91531 1.21978 0.99123 0.94536 0.87147 1.47996 1.06888 1.57041 1.22576 1.21691 0.80399 0.78463 0.87102 1.90589 1.46436 1.50098 1.56870 1.18074 0.90004 0.98474 0.89795 0.90238 1.20646 1.39472 0.96040 0.99072 0.91885 1.24929 0.95271 0.94877 0.98008 1.69937 1.43551 1.08846 1.28454 0.86544 0.80188 0.79952 0.81268 1.20169 1.21017 1.19649 1.19934 0.95618 0.92098 0.93091 1.20799 0.93277 0.98132 0.98018 1.20940 0.94710 0.97187 1.02493 1.20787 0.98559 0.93144 1.04161 1.20886 0.94786 0.97072 1.02333 1.20921 0.93421 0.97832 1.00978 1.22440 0.88570 0.98736 0.94505 1.23172 0.99920 0.93777 0.86917 1.87842 1.30548 1.71148 1.38669 0.90976 0.92516 0.91971 0.92055 0.88986 0.89383 0.89376 0.91530 0.88392 0.92278 0.87245 0.87671 0.87777 0.87650 0.87237 0.85254 0.91395 0.87766 0.92643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 8.56 37.16 0.32 -1.39 16 2 C 0.09 1.12 3.76 -26.44 -0.10 1.02 16 3 H 0.10 1.18 7.68 -51.93 -0.40 0.79 16 4 O -0.37 -4.98 11.20 -35.23 -0.39 -5.37 16 5 C 0.05 0.60 7.68 38.27 0.29 0.89 16 6 C -0.18 -2.37 6.04 -24.94 -0.15 -2.52 16 7 C 0.08 1.10 0.96 -89.82 -0.09 1.01 16 8 C 0.10 1.51 5.02 -3.79 -0.02 1.49 16 9 N -0.61 -11.03 2.90 -172.82 -0.50 -11.53 16 10 C 0.53 11.42 6.99 -10.99 -0.08 11.34 16 11 O -0.56 -13.30 14.90 5.55 0.08 -13.22 16 12 C 0.06 1.30 1.45 -94.07 -0.14 1.16 16 13 H 0.08 1.88 6.91 -51.93 -0.36 1.52 16 14 C -0.51 -12.13 5.40 -34.44 -0.19 -12.31 16 15 H 0.06 1.54 7.82 -52.49 -0.41 1.13 16 16 C 0.07 1.78 5.31 -17.82 -0.09 1.68 16 17 N -0.87 -21.76 12.99 55.43 0.72 -21.04 16 18 Si 0.89 19.02 29.54 -169.99 -5.02 14.00 16 19 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 20 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 21 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 22 C -0.01 -0.15 4.30 -104.63 -0.45 -0.60 16 23 C -0.08 -1.89 8.31 -39.58 -0.33 -2.22 16 24 C -0.14 -2.69 10.05 -39.58 -0.40 -3.09 16 25 C -0.15 -2.78 10.05 -39.58 -0.40 -3.18 16 26 C -0.13 -2.57 10.05 -39.58 -0.40 -2.97 16 27 C -0.11 -2.45 9.67 -39.59 -0.38 -2.83 16 28 C 0.08 1.33 5.70 -3.75 -0.02 1.31 16 29 C 0.04 0.53 6.71 37.09 0.25 0.78 16 30 O -0.36 -4.98 8.42 -35.23 -0.30 -5.27 16 31 H 0.07 0.79 7.85 -51.93 -0.41 0.39 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.72 7.91 -51.93 -0.41 0.31 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 36 H 0.09 1.31 7.69 -51.93 -0.40 0.91 16 37 H 0.09 1.15 5.96 -51.93 -0.31 0.84 16 38 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.10 1.66 6.88 -51.93 -0.36 1.31 16 40 H 0.27 6.44 8.31 -40.82 -0.34 6.10 16 41 H 0.11 2.50 7.89 -52.49 -0.41 2.09 16 42 H 0.11 1.80 8.06 -52.49 -0.42 1.38 16 43 H 0.10 1.62 8.06 -52.49 -0.42 1.20 16 44 H 0.11 1.73 8.06 -52.48 -0.42 1.31 16 45 H 0.11 2.28 7.96 -52.49 -0.42 1.86 16 46 H 0.13 2.43 5.05 -51.93 -0.26 2.17 16 47 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 48 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 49 H 0.06 0.75 6.13 -51.93 -0.32 0.43 16 LS Contribution 384.33 15.07 5.79 5.79 Total: -1.00 -27.61 384.33 -9.39 -37.00 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: -7.40 Total: 10.08 kcal Atomic # 6 Polarization: -8.07 SS G_CDS: -2.36 Total: -10.43 kcal Atomic # 7 Polarization: -32.79 SS G_CDS: 0.22 Total: -32.58 kcal Atomic # 8 Polarization: -23.26 SS G_CDS: -0.61 Total: -23.87 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -5.02 Total: 14.00 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -27.61 -9.39 -37.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361430947.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.822 kcal (2) G-P(sol) polarization free energy of solvation -27.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds