Wall clock time and date at job start Wed Apr 1 2020 04:34:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 110.05221 * 2 1 4 4 O 1.43895 * 109.91223 * 238.81767 * 2 1 3 5 5 C 1.44429 * 107.00331 * 266.97961 * 4 2 1 6 6 C 1.55103 * 103.55368 * 320.27518 * 5 4 2 7 7 C 1.53569 * 109.90515 * 121.17939 * 2 1 3 8 8 C 1.52661 * 110.39062 * 235.58144 * 7 2 1 9 9 N 1.47275 * 108.40070 * 173.63062 * 8 7 2 10 10 C 1.34774 * 121.04482 * 130.41492 * 9 8 7 11 11 O 1.21284 * 120.00357 * 0.02562 * 10 9 8 12 12 C 1.50703 * 119.99936 * 179.97438 * 10 9 8 13 13 H 1.09003 * 109.46734 * 59.99767 * 12 10 9 14 14 C 1.50703 * 109.47223 * 300.00123 * 12 10 9 15 15 H 1.07995 * 120.00017 * 333.09752 * 14 12 10 16 16 C 1.37872 * 119.99942 * 153.09516 * 14 12 10 17 17 N 1.31510 * 120.00375 * 5.74104 * 16 14 12 18 18 Si 1.86802 * 119.99834 * 185.73497 * 16 14 12 19 19 H 1.48500 * 109.47048 * 90.00582 * 18 16 14 20 20 H 1.48496 * 109.47169 * 210.00217 * 18 16 14 21 21 H 1.48493 * 109.47333 * 330.00284 * 18 16 14 22 22 C 1.50696 * 109.47302 * 179.97438 * 12 10 9 23 23 C 1.38239 * 119.99571 * 66.12715 * 22 12 10 24 24 C 1.38238 * 119.99857 * 179.97438 * 23 22 12 25 25 C 1.38235 * 119.99932 * 0.09767 * 24 23 22 26 26 C 1.38236 * 119.99827 * 359.97438 * 25 24 23 27 27 C 1.38226 * 120.00305 * 246.25658 * 22 12 10 28 28 C 1.47159 * 117.90678 * 310.68741 * 9 8 7 29 29 C 1.52865 * 108.74171 * 50.73896 * 28 9 8 30 30 O 1.42237 * 110.63822 * 358.60227 * 7 2 1 31 31 H 1.08997 * 109.47039 * 298.82149 * 1 2 3 32 32 H 1.09002 * 109.46660 * 58.81948 * 1 2 3 33 33 H 1.09000 * 109.47318 * 178.81681 * 1 2 3 34 34 H 1.09001 * 110.60992 * 78.80064 * 5 4 2 35 35 H 1.09000 * 110.60465 * 201.76174 * 5 4 2 36 36 H 1.09000 * 110.93626 * 278.45075 * 6 5 4 37 37 H 1.09005 * 110.93122 * 154.77946 * 6 5 4 38 38 H 1.09000 * 109.67631 * 53.89897 * 8 7 2 39 39 H 1.09003 * 109.67528 * 293.36459 * 8 7 2 40 40 H 0.96998 * 120.00674 * 179.97438 * 17 16 14 41 41 H 1.07998 * 120.00056 * 0.08549 * 23 22 12 42 42 H 1.08002 * 120.00212 * 180.36565 * 24 23 22 43 43 H 1.08000 * 120.00398 * 179.97438 * 25 24 23 44 44 H 1.08005 * 119.99820 * 179.97438 * 26 25 24 45 45 H 1.08002 * 120.00486 * 359.97438 * 27 22 12 46 46 H 1.08991 * 109.63204 * 170.50188 * 28 9 8 47 47 H 1.09001 * 109.62902 * 291.08958 * 28 9 8 48 48 H 1.09003 * 109.58494 * 187.39546 * 29 28 9 49 49 H 1.09003 * 109.41653 * 67.31138 * 29 28 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9037 1.0239 0.0000 4 8 2.0201 -0.7005 -1.1575 5 6 2.2324 -2.0732 -0.7619 6 6 2.8297 -1.9523 0.6644 7 6 2.0529 -0.7476 1.2354 8 6 2.9945 0.1460 2.0388 9 7 3.3470 -0.5529 3.2863 10 6 4.6311 -0.6701 3.6783 11 8 5.5179 -0.1956 3.0004 12 6 4.9651 -1.3897 4.9596 13 1 4.6128 -2.4195 4.9004 14 6 4.2935 -0.6947 6.1159 15 1 4.0658 0.3592 6.0539 16 6 3.9697 -1.4043 7.2528 17 7 4.3467 -2.6582 7.3750 18 14 2.9955 -0.5844 8.6197 19 1 1.5435 -0.7847 8.3814 20 1 3.3706 -1.1862 9.9244 21 1 3.2980 0.8692 8.6398 22 6 6.4579 -1.3811 5.1661 23 6 7.1166 -0.1881 5.3981 24 6 8.4858 -0.1802 5.5881 25 6 9.1966 -1.3651 5.5442 26 6 8.5379 -2.5578 5.3107 27 6 7.1687 -2.5657 5.1210 28 6 2.2535 -1.1245 4.0882 29 6 1.3691 -1.9756 3.1769 30 8 0.9724 -1.1984 2.0431 31 1 -0.3633 0.4954 0.9003 32 1 -0.3633 0.5321 -0.8792 33 1 -0.3634 -1.0274 -0.0212 34 1 1.2874 -2.6160 -0.7374 35 1 2.9388 -2.5611 -1.4335 36 1 3.8984 -1.7421 0.6226 37 1 2.6338 -2.8530 1.2463 38 1 2.4966 1.0869 2.2732 39 1 3.8971 0.3421 1.4601 40 1 4.1193 -3.1574 8.1750 41 1 6.5613 0.7375 5.4327 42 1 8.9998 0.7511 5.7752 43 1 10.2663 -1.3590 5.6922 44 1 9.0933 -3.4835 5.2760 45 1 6.6543 -3.4976 4.9381 46 1 2.6676 -1.7478 4.8806 47 1 1.6595 -0.3207 4.5232 48 1 0.4839 -2.2986 3.7247 49 1 1.9287 -2.8490 2.8418 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361430947.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:04 Heat of formation + Delta-G solvation = -105.429571 kcal Electronic energy + Delta-G solvation = -32285.070853 eV Core-core repulsion = 28176.671031 eV Total energy + Delta-G solvation = -4108.399822 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.09171 -40.69702 -39.41155 -38.49820 -35.89596 -35.35366 -33.52522 -32.81107 -32.27314 -31.53473 -30.17277 -29.60582 -28.21578 -25.99653 -25.18260 -24.44478 -23.21623 -22.82767 -22.17840 -21.00480 -19.89008 -18.74649 -18.11779 -17.90900 -17.72104 -17.42357 -16.85478 -16.74146 -16.32305 -15.86313 -15.60831 -15.56764 -15.41756 -15.25221 -15.00012 -14.58014 -14.45844 -14.08922 -13.99222 -13.92749 -13.67683 -13.53322 -13.29405 -13.07844 -12.82200 -12.78991 -12.76448 -12.71152 -12.46523 -12.23252 -12.08627 -11.95826 -11.85127 -11.66981 -11.54945 -11.28663 -11.03320 -10.72446 -10.65152 -10.40675 -9.55668 -9.44348 -9.25264 -8.19856 -6.30276 0.76279 0.80550 1.41608 1.46058 1.52764 1.84348 2.06813 2.42392 2.54043 2.82676 3.07910 3.24559 3.36349 3.52578 3.77195 3.95334 4.02860 4.12040 4.17816 4.20365 4.24788 4.29118 4.31864 4.38801 4.42026 4.49234 4.51382 4.57418 4.61882 4.67548 4.78334 4.82656 4.86793 4.94727 4.97342 4.99305 5.06635 5.07968 5.11522 5.35501 5.39278 5.43189 5.62134 5.65508 5.73475 5.78368 5.83058 5.93032 6.15426 6.22837 6.37620 6.50560 6.71164 7.33982 7.38877 8.87165 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011387 B = 0.004244 C = 0.003426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2458.426516 B = 6596.735446 C = 8169.840097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.089 3.911 3 H 0.109 0.891 4 O -0.384 6.384 5 C 0.055 3.945 6 C -0.179 4.179 7 C 0.085 3.915 8 C 0.094 3.906 9 N -0.606 5.606 10 C 0.528 3.472 11 O -0.591 6.591 12 C 0.064 3.936 13 H 0.062 0.938 14 C -0.511 4.511 15 H 0.048 0.952 16 C 0.043 3.957 17 N -0.897 5.897 18 Si 0.944 3.056 19 H -0.260 1.260 20 H -0.289 1.289 21 H -0.279 1.279 22 C -0.032 4.032 23 C -0.111 4.111 24 C -0.137 4.137 25 C -0.145 4.145 26 C -0.131 4.131 27 C -0.136 4.136 28 C 0.080 3.920 29 C 0.046 3.954 30 O -0.357 6.357 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.059 0.941 34 H 0.076 0.924 35 H 0.107 0.893 36 H 0.066 0.934 37 H 0.089 0.911 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.267 0.733 41 H 0.091 0.909 42 H 0.133 0.867 43 H 0.145 0.855 44 H 0.139 0.861 45 H 0.106 0.894 46 H 0.105 0.895 47 H 0.071 0.929 48 H 0.132 0.868 49 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.885 -0.406 -9.453 11.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.031 3.969 3 H 0.127 0.873 4 O -0.303 6.303 5 C -0.021 4.021 6 C -0.217 4.217 7 C 0.043 3.957 8 C -0.028 4.028 9 N -0.339 5.339 10 C 0.320 3.680 11 O -0.472 6.472 12 C 0.043 3.957 13 H 0.080 0.920 14 C -0.548 4.548 15 H 0.066 0.934 16 C -0.160 4.160 17 N -0.533 5.533 18 Si 0.769 3.231 19 H -0.185 1.185 20 H -0.215 1.215 21 H -0.204 1.204 22 C -0.033 4.033 23 C -0.130 4.130 24 C -0.155 4.155 25 C -0.162 4.162 26 C -0.149 4.149 27 C -0.154 4.154 28 C -0.043 4.043 29 C -0.030 4.030 30 O -0.276 6.276 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.078 0.922 34 H 0.094 0.906 35 H 0.125 0.875 36 H 0.084 0.916 37 H 0.108 0.892 38 H 0.095 0.905 39 H 0.100 0.900 40 H 0.077 0.923 41 H 0.110 0.890 42 H 0.151 0.849 43 H 0.163 0.837 44 H 0.156 0.844 45 H 0.124 0.876 46 H 0.124 0.876 47 H 0.089 0.911 48 H 0.150 0.850 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.606 -0.194 -9.925 11.400 hybrid contribution -0.086 0.217 1.488 1.506 sum -5.692 0.023 -8.436 10.177 Atomic orbital electron populations 1.21884 0.92938 1.02983 1.02619 1.22710 0.96218 0.96166 0.81824 0.87340 1.88933 1.86321 1.21909 1.33163 1.23612 1.00717 0.83790 0.94010 1.23629 1.00256 0.99376 0.98405 1.22585 0.87382 0.94042 0.91647 1.22125 0.99153 0.95431 0.86139 1.47995 1.06224 1.56397 1.23281 1.21522 0.81345 0.78422 0.86731 1.90553 1.47602 1.51488 1.57552 1.17921 0.90295 0.97357 0.90128 0.92034 1.20579 1.39425 0.95188 0.99643 0.93374 1.25427 0.95906 0.95207 0.99466 1.70023 1.44584 1.09777 1.28896 0.85769 0.79983 0.78492 0.78818 1.18481 1.21455 1.20382 1.20080 0.95895 0.93016 0.94354 1.20822 0.94768 0.97260 1.00124 1.21301 0.93723 0.99180 1.01317 1.21249 1.00529 0.92135 1.02325 1.21295 0.93920 0.98975 1.00673 1.21080 0.94885 0.97263 1.02212 1.22464 0.88251 0.98866 0.94693 1.23173 1.00424 0.92933 0.86497 1.87862 1.30223 1.71049 1.38437 0.90789 0.91272 0.92203 0.90595 0.87493 0.91553 0.89222 0.90490 0.89957 0.92342 0.89047 0.84932 0.83699 0.84361 0.87557 0.87640 0.91082 0.84982 0.92507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.93 8.56 71.98 0.62 -2.31 16 2 C 0.09 2.08 3.76 30.79 0.12 2.20 16 3 H 0.11 2.38 7.68 -2.39 -0.02 2.36 16 4 O -0.38 -9.72 11.20 -148.98 -1.67 -11.39 16 5 C 0.05 1.20 7.68 72.70 0.56 1.76 16 6 C -0.18 -4.69 6.04 31.75 0.19 -4.50 16 7 C 0.08 2.24 0.96 -10.27 -0.01 2.23 16 8 C 0.09 3.01 5.02 86.12 0.43 3.44 16 9 N -0.61 -22.56 2.90 -819.07 -2.37 -24.94 16 10 C 0.53 23.80 6.99 87.66 0.61 24.42 16 11 O -0.59 -29.39 14.90 -3.04 -0.05 -29.43 16 12 C 0.06 3.04 1.45 -13.03 -0.02 3.02 16 13 H 0.06 3.09 6.91 -2.39 -0.02 3.07 16 14 C -0.51 -24.95 5.40 25.60 0.14 -24.81 16 15 H 0.05 2.45 7.82 -2.91 -0.02 2.42 16 16 C 0.04 2.08 5.31 84.65 0.45 2.53 16 17 N -0.90 -45.67 12.99 21.44 0.28 -45.39 16 18 Si 0.94 39.26 29.54 68.60 2.03 41.29 16 19 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 20 H -0.29 -12.17 7.11 99.48 0.71 -11.46 16 21 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 22 C -0.03 -1.55 4.30 -19.87 -0.09 -1.63 16 23 C -0.11 -5.15 8.31 22.27 0.19 -4.96 16 24 C -0.14 -5.33 10.05 22.27 0.22 -5.11 16 25 C -0.14 -5.07 10.05 22.27 0.22 -4.85 16 26 C -0.13 -4.87 10.05 22.27 0.22 -4.65 16 27 C -0.14 -6.00 9.67 22.27 0.22 -5.78 16 28 C 0.08 2.66 5.70 86.21 0.49 3.15 16 29 C 0.05 1.20 6.71 71.94 0.48 1.69 16 30 O -0.36 -9.18 8.42 -148.98 -1.25 -10.44 16 31 H 0.07 1.45 7.85 -2.39 -0.02 1.43 16 32 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.06 1.22 7.91 -2.39 -0.02 1.21 16 34 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.07 2.03 7.69 -2.39 -0.02 2.01 16 37 H 0.09 2.30 5.96 -2.38 -0.01 2.28 16 38 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 39 H 0.08 2.90 6.88 -2.39 -0.02 2.89 16 40 H 0.27 13.07 8.31 -92.71 -0.77 12.29 16 41 H 0.09 4.41 7.89 -2.91 -0.02 4.39 16 42 H 0.13 4.29 8.06 -2.91 -0.02 4.27 16 43 H 0.15 3.89 8.06 -2.91 -0.02 3.87 16 44 H 0.14 4.15 8.06 -2.91 -0.02 4.13 16 45 H 0.11 4.59 7.96 -2.91 -0.02 4.57 16 46 H 0.11 4.10 5.05 -2.39 -0.01 4.08 16 47 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 48 H 0.13 2.74 8.14 -2.39 -0.02 2.72 16 49 H 0.06 1.48 6.13 -2.39 -0.01 1.47 16 Total: -1.00 -60.75 384.33 2.95 -57.80 By element: Atomic # 1 Polarization: 35.73 SS G_CDS: 0.95 Total: 36.68 kcal Atomic # 6 Polarization: -19.23 SS G_CDS: 5.05 Total: -14.18 kcal Atomic # 7 Polarization: -68.23 SS G_CDS: -2.10 Total: -70.33 kcal Atomic # 8 Polarization: -48.29 SS G_CDS: -2.97 Total: -51.26 kcal Atomic # 14 Polarization: 39.26 SS G_CDS: 2.03 Total: 41.29 kcal Total: -60.75 2.95 -57.80 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361430947.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.631 kcal (2) G-P(sol) polarization free energy of solvation -60.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds