Wall clock time and date at job start Wed Apr 1 2020 02:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30833 * 125.96154 * 2 1 4 4 C 1.33238 * 109.83061 * 179.97438 * 3 2 1 5 5 C 1.50700 * 125.52844 * 180.02562 * 4 3 2 6 6 H 1.08998 * 110.88324 * 356.12253 * 5 4 3 7 7 C 1.55157 * 111.00324 * 120.00173 * 5 4 3 8 8 C 1.54322 * 102.94198 * 153.58078 * 7 5 4 9 9 N 1.47020 * 107.26994 * 337.80391 * 8 7 5 10 10 C 1.34779 * 125.64875 * 178.98908 * 9 8 7 11 11 O 1.21592 * 120.00021 * 179.97438 * 10 9 8 12 12 N 1.34778 * 119.99980 * 359.97438 * 10 9 8 13 13 C 1.40195 * 120.00021 * 180.02562 * 12 10 9 14 14 C 1.40396 * 125.96994 * 359.97438 * 13 12 10 15 15 C 1.35250 * 107.86495 * 180.02562 * 14 13 12 16 16 N 1.34959 * 107.85879 * 0.02562 * 15 14 13 17 17 C 1.46502 * 125.97623 * 179.97438 * 16 15 14 18 18 C 1.50703 * 109.46968 * 125.00334 * 17 16 15 19 19 H 1.07999 * 120.00029 * 359.97438 * 18 17 16 20 20 C 1.37876 * 119.99919 * 180.02562 * 18 17 16 21 21 N 1.31515 * 120.00001 * 180.02562 * 20 18 17 22 22 Si 1.86801 * 120.00000 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.47109 * 90.00362 * 22 20 18 24 24 H 1.48494 * 109.46881 * 210.00045 * 22 20 18 25 25 H 1.48496 * 109.47179 * 330.00152 * 22 20 18 26 26 N 1.31209 * 125.97040 * 179.69355 * 13 12 10 27 27 C 1.47426 * 108.70383 * 358.94309 * 9 8 7 28 28 N 1.30716 * 108.94718 * 0.02562 * 4 3 2 29 29 N 1.34431 * 125.95952 * 179.69270 * 2 1 3 30 30 H 0.96990 * 126.82423 * 0.02562 * 29 2 1 31 31 H 1.09002 * 109.47152 * 89.99865 * 1 2 3 32 32 H 1.09001 * 109.46980 * 329.99965 * 1 2 3 33 33 H 1.09004 * 109.47113 * 209.99946 * 1 2 3 34 34 H 1.09012 * 110.71959 * 271.94214 * 7 5 4 35 35 H 1.09002 * 110.72370 * 35.20887 * 7 5 4 36 36 H 1.09000 * 109.88777 * 97.22401 * 8 7 5 37 37 H 1.09003 * 109.87770 * 218.23299 * 8 7 5 38 38 H 0.97002 * 120.00040 * 359.97438 * 12 10 9 39 39 H 1.08003 * 126.07187 * 0.02562 * 14 13 12 40 40 H 1.08002 * 126.07039 * 179.97438 * 15 14 13 41 41 H 1.08994 * 109.47350 * 245.00089 * 17 16 15 42 42 H 1.08992 * 109.46900 * 5.00846 * 17 16 15 43 43 H 0.96998 * 120.00397 * 179.97438 * 21 20 18 44 44 H 1.08999 * 110.36583 * 265.29076 * 27 9 8 45 45 H 1.08995 * 110.36748 * 142.96684 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0590 0.0000 4 6 3.5553 0.6888 0.0006 5 6 4.7373 1.6236 0.0013 6 1 4.4117 2.6616 -0.0676 7 6 5.6221 1.4003 1.2561 8 6 7.0156 1.8655 0.7836 9 7 7.0275 1.7867 -0.6845 10 6 8.0602 2.1267 -1.4810 11 8 7.9580 2.0196 -2.6879 12 7 9.2061 2.5855 -0.9398 13 6 10.2801 2.9397 -1.7684 14 6 10.2990 2.8667 -3.1704 15 6 11.5107 3.2950 -3.5918 16 7 12.2344 3.6268 -2.5021 17 6 13.6072 4.1384 -2.5038 18 6 13.6577 5.4438 -1.7524 19 1 12.7572 5.8517 -1.3176 20 6 14.8533 6.1178 -1.6211 21 7 14.8974 7.2567 -0.9649 22 14 16.4106 5.4126 -2.3738 23 1 16.5630 5.9191 -3.7614 24 1 17.5838 5.8278 -1.5637 25 1 16.3231 3.9303 -2.3947 26 7 11.4414 3.4021 -1.3695 27 6 5.7232 1.2731 -1.1409 28 7 3.6195 -0.6168 0.0004 29 7 2.2964 -1.0881 0.0058 30 1 2.0094 -2.0145 0.0105 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3633 0.8900 0.5138 33 1 -0.3633 -0.8900 0.5138 34 1 5.2729 2.0120 2.0881 35 1 5.6406 0.3461 1.5324 36 1 7.1907 2.8935 1.1010 37 1 7.7844 1.2136 1.1984 38 1 9.2875 2.6712 0.0230 39 1 9.4896 2.5286 -3.8005 40 1 11.8408 3.3592 -4.6182 41 1 14.2649 3.4157 -2.0210 42 1 13.9343 4.2977 -3.5312 43 1 15.7386 7.7308 -0.8722 44 1 5.7696 0.1935 -1.2839 45 1 5.4236 1.7665 -2.0654 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365767536.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:50:58 Heat of formation + Delta-G solvation = 155.357233 kcal Electronic energy + Delta-G solvation = -28558.918913 eV Core-core repulsion = 24422.872814 eV Total energy + Delta-G solvation = -4136.046099 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.65539 -40.80683 -39.90714 -37.86214 -34.72006 -33.99723 -33.20568 -32.84749 -31.72212 -30.87782 -29.57536 -29.28031 -28.26213 -27.08150 -24.77383 -23.01847 -22.53022 -21.52509 -21.21412 -20.27225 -20.08433 -19.28436 -18.48899 -17.94787 -17.02589 -16.60604 -16.35923 -16.16816 -15.62545 -15.07384 -14.97604 -14.69067 -14.32942 -13.98204 -13.84046 -13.63822 -13.58056 -13.34088 -13.15222 -13.00986 -12.83702 -12.49460 -12.37502 -12.26956 -12.09974 -12.02275 -11.79384 -11.22544 -11.12270 -10.74692 -10.60595 -10.49524 -10.47009 -10.06238 -9.96037 -9.89549 -9.71154 -9.47801 -8.83391 -8.73125 -8.11141 -7.41762 -6.20083 -4.22062 1.09131 2.10976 2.23942 2.38695 2.64038 3.09487 3.17848 3.24413 3.25696 3.34770 3.50802 3.83982 3.97796 4.06400 4.23496 4.26132 4.34281 4.36089 4.64504 4.79020 4.82638 4.95324 5.07898 5.10227 5.18593 5.30620 5.41458 5.44105 5.57593 5.62648 5.74897 5.75342 5.77286 5.91558 5.96473 6.28215 6.42228 6.52039 6.54893 6.65582 6.77254 6.98027 7.31820 7.48410 7.62589 7.86399 7.90335 8.37890 8.59610 8.64878 8.90370 9.35099 10.92659 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.035292 B = 0.001677 C = 0.001642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.199263 B =16688.833723 C =17052.231821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.284 3.716 3 N -0.535 5.535 4 C 0.244 3.756 5 C -0.012 4.012 6 H 0.116 0.884 7 C -0.116 4.116 8 C 0.095 3.905 9 N -0.634 5.634 10 C 0.734 3.266 11 O -0.564 6.564 12 N -0.640 5.640 13 C 0.280 3.720 14 C -0.282 4.282 15 C 0.051 3.949 16 N -0.321 5.321 17 C 0.232 3.768 18 C -0.534 4.534 19 H 0.086 0.914 20 C 0.076 3.924 21 N -0.888 5.888 22 Si 0.873 3.127 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.264 1.264 26 N -0.300 5.300 27 C 0.142 3.858 28 N -0.306 5.306 29 N -0.483 5.483 30 H 0.441 0.559 31 H 0.093 0.907 32 H 0.099 0.901 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.408 0.592 39 H 0.163 0.837 40 H 0.168 0.832 41 H 0.041 0.959 42 H 0.049 0.951 43 H 0.268 0.732 44 H 0.075 0.925 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.624 -17.559 3.973 33.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.005 3.995 3 N -0.264 5.264 4 C -0.039 4.039 5 C -0.034 4.034 6 H 0.134 0.866 7 C -0.155 4.155 8 C -0.028 4.028 9 N -0.374 5.374 10 C 0.436 3.564 11 O -0.439 6.439 12 N -0.290 5.290 13 C 0.025 3.975 14 C -0.313 4.313 15 C -0.098 4.098 16 N -0.103 5.103 17 C 0.113 3.887 18 C -0.572 4.572 19 H 0.104 0.896 20 C -0.128 4.128 21 N -0.526 5.526 22 Si 0.699 3.301 23 H -0.197 1.197 24 H -0.206 1.206 25 H -0.189 1.189 26 N -0.131 5.131 27 C 0.017 3.983 28 N -0.135 5.135 29 N -0.201 5.201 30 H 0.286 0.714 31 H 0.112 0.888 32 H 0.118 0.882 33 H 0.102 0.898 34 H 0.109 0.891 35 H 0.103 0.897 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.243 0.757 39 H 0.180 0.820 40 H 0.186 0.814 41 H 0.059 0.941 42 H 0.066 0.934 43 H 0.078 0.922 44 H 0.093 0.907 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -27.084 -17.108 4.091 32.295 hybrid contribution 0.093 -1.010 -0.403 1.091 sum -26.991 -18.118 3.689 32.717 Atomic orbital electron populations 1.20422 0.83493 1.05117 1.04760 1.24438 0.96703 0.82776 0.95555 1.70372 1.01272 1.29535 1.25260 1.23687 0.92674 0.89803 0.97727 1.20678 0.88307 0.97686 0.96700 0.86569 1.22691 0.92773 1.03254 0.96805 1.22096 0.98166 1.02030 0.80503 1.47363 1.13863 1.69800 1.06350 1.15026 0.78854 0.78145 0.84415 1.90872 1.81270 1.59951 1.11832 1.41355 1.10963 1.67214 1.09473 1.18782 0.88156 1.00593 0.89963 1.21540 0.99788 1.17004 0.93012 1.22541 0.92600 1.00794 0.93910 1.48581 1.12843 1.47077 1.01754 1.20027 0.73754 0.96195 0.98683 1.21127 0.97558 1.03140 1.35352 0.89618 1.24831 0.98528 0.94642 0.94757 1.69875 1.26930 1.15054 1.40706 0.86907 0.83378 0.80031 0.79790 1.19731 1.20572 1.18872 1.77388 1.01614 1.24608 1.09443 1.22000 0.79891 0.99684 0.96706 1.78020 0.96561 1.12219 1.26656 1.48017 1.04290 1.10137 1.57654 0.71354 0.88815 0.88198 0.89803 0.89122 0.89694 0.90682 0.90772 0.75728 0.82016 0.81430 0.94083 0.93358 0.92225 0.90660 0.89575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.14 10.51 36.01 0.38 0.24 16 2 C 0.28 1.82 8.24 -155.69 -1.28 0.53 16 3 N -0.54 -5.13 11.19 -8.16 -0.09 -5.23 16 4 C 0.24 2.37 6.83 -156.85 -1.07 1.30 16 5 C -0.01 -0.10 3.57 -89.63 -0.32 -0.42 16 6 H 0.12 0.97 8.14 -51.93 -0.42 0.55 16 7 C -0.12 -0.83 6.41 -24.90 -0.16 -0.98 16 8 C 0.10 0.80 6.15 -3.07 -0.02 0.78 16 9 N -0.63 -7.58 3.33 -176.24 -0.59 -8.16 16 10 C 0.73 11.82 8.46 -86.92 -0.74 11.08 16 11 O -0.56 -10.83 13.73 5.28 0.07 -10.76 16 12 N -0.64 -10.67 5.41 -15.51 -0.08 -10.75 16 13 C 0.28 5.81 8.11 -154.36 -1.25 4.56 16 14 C -0.28 -5.73 9.61 -39.83 -0.38 -6.12 16 15 C 0.05 1.01 11.44 -17.24 -0.20 0.81 16 16 N -0.32 -7.43 3.67 -62.56 -0.23 -7.66 16 17 C 0.23 5.60 5.33 -5.19 -0.03 5.57 16 18 C -0.53 -15.25 9.78 -34.44 -0.34 -15.59 16 19 H 0.09 2.77 8.06 -52.49 -0.42 2.35 16 20 C 0.08 2.15 5.47 -17.82 -0.10 2.06 16 21 N -0.89 -26.83 13.96 55.43 0.77 -26.05 16 22 Si 0.87 20.33 27.47 -169.99 -4.67 15.66 16 23 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 H -0.26 -5.84 6.54 56.52 0.37 -5.47 16 26 N -0.30 -7.05 12.42 31.44 0.39 -6.66 16 27 C 0.14 1.52 6.36 -2.53 -0.02 1.50 16 28 N -0.31 -2.91 12.43 32.42 0.40 -2.51 16 29 N -0.48 -3.00 7.45 32.62 0.24 -2.75 16 30 H 0.44 1.13 8.96 -182.34 -1.63 -0.51 16 31 H 0.09 0.08 8.14 -51.93 -0.42 -0.34 16 32 H 0.10 0.18 8.14 -51.93 -0.42 -0.24 16 33 H 0.08 -0.05 8.14 -51.93 -0.42 -0.47 16 34 H 0.09 0.51 8.14 -51.92 -0.42 0.08 16 35 H 0.08 0.63 7.97 -51.93 -0.41 0.22 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.41 5.68 7.81 -40.82 -0.32 5.36 16 39 H 0.16 3.24 5.91 -52.48 -0.31 2.93 16 40 H 0.17 2.64 8.06 -52.49 -0.42 2.22 16 41 H 0.04 0.98 7.20 -51.93 -0.37 0.61 16 42 H 0.05 1.05 7.50 -51.93 -0.39 0.67 16 43 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 44 H 0.08 0.85 7.79 -51.93 -0.40 0.44 16 45 H 0.09 1.00 8.04 -51.93 -0.42 0.59 16 LS Contribution 380.65 15.07 5.74 5.74 Total: -1.00 -38.44 380.65 -10.79 -49.24 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -7.23 Total: 4.57 kcal Atomic # 6 Polarization: 10.84 SS G_CDS: -5.52 Total: 5.32 kcal Atomic # 7 Polarization: -70.59 SS G_CDS: 0.82 Total: -69.77 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: 0.07 Total: -10.76 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -4.67 Total: 15.66 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -38.44 -10.79 -49.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365767536.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 204.594 kcal (2) G-P(sol) polarization free energy of solvation -38.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 166.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 155.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds