Wall clock time and date at job start Wed Apr 1 2020 02:50:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30833 * 125.96154 * 2 1 4 4 C 1.33238 * 109.83061 * 179.97438 * 3 2 1 5 5 C 1.50700 * 125.52844 * 180.02562 * 4 3 2 6 6 H 1.08998 * 110.88324 * 356.12253 * 5 4 3 7 7 C 1.55157 * 111.00324 * 120.00173 * 5 4 3 8 8 C 1.54322 * 102.94198 * 153.58078 * 7 5 4 9 9 N 1.47020 * 107.26994 * 337.80391 * 8 7 5 10 10 C 1.34779 * 125.64875 * 178.98908 * 9 8 7 11 11 O 1.21592 * 120.00021 * 179.97438 * 10 9 8 12 12 N 1.34778 * 119.99980 * 359.97438 * 10 9 8 13 13 C 1.40195 * 120.00021 * 180.02562 * 12 10 9 14 14 C 1.40396 * 125.96994 * 359.97438 * 13 12 10 15 15 C 1.35250 * 107.86495 * 180.02562 * 14 13 12 16 16 N 1.34959 * 107.85879 * 0.02562 * 15 14 13 17 17 C 1.46502 * 125.97623 * 179.97438 * 16 15 14 18 18 C 1.50703 * 109.46968 * 125.00334 * 17 16 15 19 19 H 1.07999 * 120.00029 * 359.97438 * 18 17 16 20 20 C 1.37876 * 119.99919 * 180.02562 * 18 17 16 21 21 N 1.31515 * 120.00001 * 180.02562 * 20 18 17 22 22 Si 1.86801 * 120.00000 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.47109 * 90.00362 * 22 20 18 24 24 H 1.48494 * 109.46881 * 210.00045 * 22 20 18 25 25 H 1.48496 * 109.47179 * 330.00152 * 22 20 18 26 26 N 1.31209 * 125.97040 * 179.69355 * 13 12 10 27 27 C 1.47426 * 108.70383 * 358.94309 * 9 8 7 28 28 N 1.30716 * 108.94718 * 0.02562 * 4 3 2 29 29 N 1.34431 * 125.95952 * 179.69270 * 2 1 3 30 30 H 0.96990 * 126.82423 * 0.02562 * 29 2 1 31 31 H 1.09002 * 109.47152 * 89.99865 * 1 2 3 32 32 H 1.09001 * 109.46980 * 329.99965 * 1 2 3 33 33 H 1.09004 * 109.47113 * 209.99946 * 1 2 3 34 34 H 1.09012 * 110.71959 * 271.94214 * 7 5 4 35 35 H 1.09002 * 110.72370 * 35.20887 * 7 5 4 36 36 H 1.09000 * 109.88777 * 97.22401 * 8 7 5 37 37 H 1.09003 * 109.87770 * 218.23299 * 8 7 5 38 38 H 0.97002 * 120.00040 * 359.97438 * 12 10 9 39 39 H 1.08003 * 126.07187 * 0.02562 * 14 13 12 40 40 H 1.08002 * 126.07039 * 179.97438 * 15 14 13 41 41 H 1.08994 * 109.47350 * 245.00089 * 17 16 15 42 42 H 1.08992 * 109.46900 * 5.00846 * 17 16 15 43 43 H 0.96998 * 120.00397 * 179.97438 * 21 20 18 44 44 H 1.08999 * 110.36583 * 265.29076 * 27 9 8 45 45 H 1.08995 * 110.36748 * 142.96684 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0590 0.0000 4 6 3.5553 0.6888 0.0006 5 6 4.7373 1.6236 0.0013 6 1 4.4117 2.6616 -0.0676 7 6 5.6221 1.4003 1.2561 8 6 7.0156 1.8655 0.7836 9 7 7.0275 1.7867 -0.6845 10 6 8.0602 2.1267 -1.4810 11 8 7.9580 2.0196 -2.6879 12 7 9.2061 2.5855 -0.9398 13 6 10.2801 2.9397 -1.7684 14 6 10.2990 2.8667 -3.1704 15 6 11.5107 3.2950 -3.5918 16 7 12.2344 3.6268 -2.5021 17 6 13.6072 4.1384 -2.5038 18 6 13.6577 5.4438 -1.7524 19 1 12.7572 5.8517 -1.3176 20 6 14.8533 6.1178 -1.6211 21 7 14.8974 7.2567 -0.9649 22 14 16.4106 5.4126 -2.3738 23 1 16.5630 5.9191 -3.7614 24 1 17.5838 5.8278 -1.5637 25 1 16.3231 3.9303 -2.3947 26 7 11.4414 3.4021 -1.3695 27 6 5.7232 1.2731 -1.1409 28 7 3.6195 -0.6168 0.0004 29 7 2.2964 -1.0881 0.0058 30 1 2.0094 -2.0145 0.0105 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3633 0.8900 0.5138 33 1 -0.3633 -0.8900 0.5138 34 1 5.2729 2.0120 2.0881 35 1 5.6406 0.3461 1.5324 36 1 7.1907 2.8935 1.1010 37 1 7.7844 1.2136 1.1984 38 1 9.2875 2.6712 0.0230 39 1 9.4896 2.5286 -3.8005 40 1 11.8408 3.3592 -4.6182 41 1 14.2649 3.4157 -2.0210 42 1 13.9343 4.2977 -3.5312 43 1 15.7386 7.7308 -0.8722 44 1 5.7696 0.1935 -1.2839 45 1 5.4236 1.7665 -2.0654 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365767536.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:50:57 Heat of formation + Delta-G solvation = 127.887961 kcal Electronic energy + Delta-G solvation = -28560.110070 eV Core-core repulsion = 24422.872814 eV Total energy + Delta-G solvation = -4137.237256 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.22965 -42.27810 -41.18605 -38.89746 -36.24262 -35.25442 -34.59620 -33.37156 -33.16078 -32.06876 -30.96928 -30.22965 -29.01479 -28.62850 -25.85404 -24.37776 -23.69399 -22.64310 -22.04126 -21.70615 -20.91003 -20.62197 -19.14337 -19.08285 -19.01011 -18.09583 -17.42583 -17.10475 -16.70013 -16.46682 -16.19207 -15.90502 -15.51517 -15.22092 -14.82789 -14.64222 -14.51711 -14.29651 -14.15625 -13.96944 -13.82156 -13.79117 -13.68103 -13.56629 -12.98959 -12.84266 -12.64741 -12.55598 -12.49189 -12.31169 -11.87937 -11.82122 -11.63375 -11.48170 -11.16125 -11.09969 -11.08899 -10.85274 -10.46938 -9.92340 -9.70498 -9.03066 -8.35796 -6.46014 0.54204 0.96948 1.06881 1.37989 1.40990 1.50785 1.65077 1.70078 1.74570 1.97984 2.30547 2.35641 2.79940 2.96210 2.97056 3.36096 3.53619 3.74867 3.79268 3.93690 4.13417 4.19669 4.21602 4.26170 4.54585 4.61755 4.66221 4.70739 4.72241 4.72381 4.83324 4.86340 4.91991 4.94389 5.02902 5.07627 5.13597 5.23191 5.25941 5.31105 5.34470 5.76309 5.91089 6.02716 6.19755 6.42475 6.55945 6.62103 7.05683 7.06719 7.16983 7.31721 8.81307 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.035292 B = 0.001677 C = 0.001642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.199263 B =16688.833723 C =17052.231821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.289 3.711 3 N -0.571 5.571 4 C 0.233 3.767 5 C -0.004 4.004 6 H 0.119 0.881 7 C -0.103 4.103 8 C 0.089 3.911 9 N -0.627 5.627 10 C 0.731 3.269 11 O -0.599 6.599 12 N -0.634 5.634 13 C 0.284 3.716 14 C -0.295 4.295 15 C 0.063 3.937 16 N -0.344 5.344 17 C 0.240 3.760 18 C -0.548 4.548 19 H 0.026 0.974 20 C 0.015 3.985 21 N -0.942 5.942 22 Si 0.956 3.044 23 H -0.253 1.253 24 H -0.281 1.281 25 H -0.240 1.240 26 N -0.347 5.347 27 C 0.143 3.857 28 N -0.333 5.333 29 N -0.474 5.474 30 H 0.456 0.544 31 H 0.107 0.893 32 H 0.101 0.899 33 H 0.113 0.887 34 H 0.112 0.888 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.419 0.581 39 H 0.166 0.834 40 H 0.212 0.788 41 H 0.046 0.954 42 H 0.082 0.918 43 H 0.272 0.728 44 H 0.070 0.930 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.195 -19.492 3.436 35.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.011 3.989 3 N -0.301 5.301 4 C -0.050 4.050 5 C -0.026 4.026 6 H 0.137 0.863 7 C -0.142 4.142 8 C -0.033 4.033 9 N -0.364 5.364 10 C 0.432 3.568 11 O -0.477 6.477 12 N -0.285 5.285 13 C 0.028 3.972 14 C -0.326 4.326 15 C -0.085 4.085 16 N -0.126 5.126 17 C 0.120 3.880 18 C -0.586 4.586 19 H 0.045 0.955 20 C -0.184 4.184 21 N -0.581 5.581 22 Si 0.777 3.223 23 H -0.178 1.178 24 H -0.206 1.206 25 H -0.163 1.163 26 N -0.178 5.178 27 C 0.019 3.981 28 N -0.163 5.163 29 N -0.194 5.194 30 H 0.305 0.695 31 H 0.125 0.875 32 H 0.119 0.881 33 H 0.131 0.869 34 H 0.130 0.870 35 H 0.103 0.897 36 H 0.106 0.894 37 H 0.104 0.896 38 H 0.256 0.744 39 H 0.183 0.817 40 H 0.228 0.772 41 H 0.064 0.936 42 H 0.100 0.900 43 H 0.081 0.919 44 H 0.088 0.912 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -27.734 -19.094 3.598 33.863 hybrid contribution 0.006 -0.436 -0.175 0.470 sum -27.728 -19.530 3.423 34.087 Atomic orbital electron populations 1.20658 0.80221 1.06626 1.06014 1.25225 0.98227 0.81988 0.93450 1.70360 1.01533 1.31270 1.26962 1.23747 0.93045 0.89977 0.98189 1.20584 0.87931 0.97726 0.96361 0.86329 1.22654 0.91290 1.03619 0.96610 1.22388 0.99557 1.03293 0.78083 1.47370 1.13035 1.68232 1.07799 1.15155 0.79216 0.78054 0.84355 1.90831 1.81952 1.61411 1.13506 1.41340 1.10331 1.67069 1.09790 1.19101 0.88216 0.98950 0.90893 1.21719 1.00277 1.17645 0.92950 1.23228 0.91797 0.98513 0.94955 1.48498 1.12948 1.48586 1.02562 1.19891 0.74840 0.93665 0.99614 1.21246 0.95848 1.05415 1.36076 0.95530 1.25916 1.02827 0.94687 0.94960 1.70051 1.28364 1.17063 1.42615 0.85611 0.77093 0.80429 0.79208 1.17759 1.20616 1.16271 1.77306 1.02955 1.26821 1.10743 1.22010 0.79790 0.99062 0.97213 1.77920 0.98565 1.12284 1.27495 1.47966 1.03296 1.11095 1.57092 0.69540 0.87492 0.88071 0.86880 0.86955 0.89746 0.89414 0.89559 0.74381 0.81702 0.77154 0.93625 0.90013 0.91902 0.91186 0.90981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.09 10.51 71.24 0.75 0.66 16 2 C 0.29 3.28 8.24 138.23 1.14 4.42 16 3 N -0.57 -10.56 11.19 -179.72 -2.01 -12.57 16 4 C 0.23 4.43 6.83 138.63 0.95 5.38 16 5 C 0.00 -0.07 3.57 -10.15 -0.04 -0.11 16 6 H 0.12 1.93 8.14 -2.39 -0.02 1.91 16 7 C -0.10 -1.32 6.41 31.78 0.20 -1.11 16 8 C 0.09 1.38 6.15 86.73 0.53 1.91 16 9 N -0.63 -14.87 3.33 -829.76 -2.76 -17.63 16 10 C 0.73 23.74 8.46 179.05 1.51 25.25 16 11 O -0.60 -23.39 13.73 -4.01 -0.05 -23.45 16 12 N -0.63 -21.33 5.41 -321.23 -1.74 -23.07 16 13 C 0.28 11.96 8.11 133.31 1.08 13.04 16 14 C -0.29 -11.91 9.61 22.11 0.21 -11.70 16 15 C 0.06 2.42 11.44 83.52 0.96 3.38 16 16 N -0.34 -15.84 3.67 -351.85 -1.29 -17.13 16 17 C 0.24 11.28 5.33 85.63 0.46 11.74 16 18 C -0.55 -32.05 9.78 25.60 0.25 -31.80 16 19 H 0.03 1.81 8.06 -2.91 -0.02 1.79 16 20 C 0.01 0.85 5.47 84.65 0.46 1.31 16 21 N -0.94 -58.49 13.96 21.45 0.30 -58.19 16 22 Si 0.96 41.09 27.47 68.60 1.88 42.97 16 23 H -0.25 -10.13 7.11 99.48 0.71 -9.42 16 24 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 25 H -0.24 -9.30 6.54 99.48 0.65 -8.65 16 26 N -0.35 -16.67 12.42 -54.44 -0.68 -17.35 16 27 C 0.14 3.11 6.36 86.85 0.55 3.66 16 28 N -0.33 -6.14 12.43 -51.33 -0.64 -6.78 16 29 N -0.47 -5.28 7.45 -50.70 -0.38 -5.66 16 30 H 0.46 1.60 8.96 -213.10 -1.91 -0.31 16 31 H 0.11 -0.09 8.14 -2.39 -0.02 -0.11 16 32 H 0.10 0.16 8.14 -2.39 -0.02 0.14 16 33 H 0.11 -0.51 8.14 -2.38 -0.02 -0.53 16 34 H 0.11 1.00 8.14 -2.38 -0.02 0.98 16 35 H 0.08 1.14 7.97 -2.39 -0.02 1.12 16 36 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.42 11.74 7.81 -92.71 -0.72 11.01 16 39 H 0.17 6.59 5.91 -2.91 -0.02 6.57 16 40 H 0.21 5.94 8.06 -2.91 -0.02 5.92 16 41 H 0.05 2.10 7.20 -2.39 -0.02 2.08 16 42 H 0.08 3.30 7.50 -2.39 -0.02 3.28 16 43 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 44 H 0.07 1.61 7.79 -2.39 -0.02 1.59 16 45 H 0.07 1.76 8.04 -2.39 -0.02 1.74 16 Total: -1.00 -87.91 380.65 0.02 -87.89 By element: Atomic # 1 Polarization: 26.56 SS G_CDS: -1.63 Total: 24.93 kcal Atomic # 6 Polarization: 17.02 SS G_CDS: 9.02 Total: 26.04 kcal Atomic # 7 Polarization: -149.19 SS G_CDS: -9.19 Total: -158.38 kcal Atomic # 8 Polarization: -23.39 SS G_CDS: -0.05 Total: -23.45 kcal Atomic # 14 Polarization: 41.09 SS G_CDS: 1.88 Total: 42.97 kcal Total: -87.91 0.02 -87.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365767536.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 215.776 kcal (2) G-P(sol) polarization free energy of solvation -87.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds