Wall clock time and date at job start Wed Apr 1 2020 03:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46709 * 2 1 4 4 C 1.53000 * 109.47183 * 240.00243 * 2 1 3 5 5 N 1.46500 * 109.46953 * 120.00036 * 2 1 3 6 6 N 1.28779 * 125.45077 * 359.97412 * 5 2 1 7 7 N 1.28995 * 108.72516 * 180.02562 * 6 5 2 8 8 C 1.33310 * 107.35441 * 0.02562 * 7 6 5 9 9 C 1.50700 * 126.54687 * 180.02562 * 8 7 6 10 10 N 1.46500 * 109.47210 * 90.02429 * 9 8 7 11 11 C 1.34775 * 120.00148 * 180.02562 * 10 9 8 12 12 O 1.21590 * 119.99769 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00474 * 180.02562 * 11 10 9 14 14 C 1.39451 * 120.00455 * 184.49589 * 13 11 10 15 15 C 1.38639 * 119.65306 * 174.66023 * 14 13 11 16 16 C 1.40820 * 118.67860 * 179.97438 * 15 14 13 17 17 C 1.41542 * 120.99743 * 179.97438 * 16 15 14 18 18 H 1.08001 * 120.00557 * 149.67114 * 17 16 15 19 19 C 1.40033 * 120.00214 * 329.66552 * 17 16 15 20 20 N 1.30744 * 120.00297 * 167.49218 * 19 17 16 21 21 Si 1.86800 * 119.99767 * 347.49337 * 19 17 16 22 22 H 1.48497 * 109.47103 * 92.50347 * 21 19 17 23 23 H 1.48502 * 109.46956 * 212.50677 * 21 19 17 24 24 H 1.48495 * 109.47152 * 332.50335 * 21 19 17 25 25 C 1.41163 * 118.00691 * 359.97438 * 16 15 14 26 26 C 1.36595 * 119.12150 * 0.02562 * 25 16 15 27 27 N 1.32063 * 121.26172 * 359.72153 * 26 25 16 28 28 N 1.28881 * 125.44709 * 180.31387 * 5 2 1 29 29 H 1.09001 * 109.47518 * 299.99937 * 1 2 3 30 30 H 1.09008 * 109.46994 * 60.00313 * 1 2 3 31 31 H 1.09003 * 109.47412 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.46724 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.47535 * 299.99542 * 3 2 1 34 34 H 1.09001 * 109.47719 * 60.00196 * 3 2 1 35 35 H 1.08998 * 109.46710 * 299.99805 * 4 2 1 36 36 H 1.08995 * 109.47294 * 59.99822 * 4 2 1 37 37 H 1.09001 * 109.47267 * 180.02562 * 4 2 1 38 38 H 1.08998 * 109.47417 * 330.02507 * 9 8 7 39 39 H 1.09002 * 109.47159 * 210.02700 * 9 8 7 40 40 H 0.96999 * 120.00095 * 359.97438 * 10 9 8 41 41 H 0.96998 * 119.99719 * 4.76365 * 13 11 10 42 42 H 1.08001 * 120.65951 * 0.02562 * 15 14 13 43 43 H 0.96995 * 120.00055 * 180.02562 * 20 19 17 44 44 H 1.07998 * 120.43939 * 179.97438 * 25 16 15 45 45 H 1.08003 * 119.36267 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 2.0183 -0.6906 1.1962 6 7 1.2782 -1.2172 2.1091 7 7 2.0400 -1.7373 3.0108 8 6 3.3016 -1.5218 2.6381 9 6 4.5419 -1.9499 3.3794 10 7 4.9444 -3.2843 2.9283 11 6 6.0347 -3.8741 3.4572 12 8 6.6846 -3.2984 4.3085 13 7 6.4053 -5.1015 3.0418 14 6 7.4768 -5.7509 3.6541 15 6 7.7822 -7.0556 3.2982 16 6 8.8687 -7.6915 3.9291 17 6 9.2234 -9.0226 3.6038 18 1 10.2531 -9.3401 3.6755 19 6 8.2390 -9.9280 3.1889 20 7 8.5846 -11.0716 2.6578 21 14 6.4319 -9.5018 3.3942 22 1 5.9320 -8.8548 2.1545 23 1 5.6571 -10.7420 3.6525 24 1 6.2701 -8.5697 4.5388 25 6 9.5937 -6.9616 4.8958 26 6 9.2179 -5.6796 5.1804 27 7 8.1960 -5.1124 4.5655 28 7 3.2573 -0.8630 1.5063 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0277 -0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6767 -1.7488 -1.2492 36 1 1.6767 -0.2074 -2.1392 37 1 3.1300 -0.7216 -1.2491 38 1 4.3353 -1.9751 4.4494 39 1 5.3463 -1.2414 3.1814 40 1 4.4257 -3.7437 2.2495 41 1 5.9292 -5.5316 2.3144 42 1 7.1988 -7.5736 2.5514 43 1 7.9028 -11.6985 2.3701 44 1 10.4339 -7.4111 5.4041 45 1 9.7695 -5.1177 5.9196 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001467112529.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:17:01 Heat of formation + Delta-G solvation = 119.201204 kcal Electronic energy + Delta-G solvation = -29010.047925 eV Core-core repulsion = 24872.433983 eV Total energy + Delta-G solvation = -4137.613942 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -45.54556 -41.58426 -40.04403 -38.69927 -36.54929 -35.92942 -35.56669 -34.56427 -33.39869 -33.14115 -30.81712 -28.88296 -28.52723 -28.11667 -27.79628 -25.68934 -24.18224 -23.90100 -22.98940 -21.80002 -21.67379 -20.04017 -19.47924 -18.45557 -18.23167 -17.86520 -17.36332 -16.79106 -16.50556 -16.35993 -16.01231 -15.73167 -15.28147 -15.23086 -15.14622 -14.84697 -14.81443 -14.71582 -14.44092 -14.21524 -13.71757 -13.47051 -13.43526 -13.23748 -12.98455 -12.84910 -12.76244 -12.62980 -12.60990 -12.59137 -12.21305 -12.02718 -12.00154 -11.84186 -11.63220 -11.49720 -11.29070 -11.13285 -10.29726 -10.11052 -9.68725 -8.98971 -8.94443 -6.71954 0.07982 0.61320 0.68421 0.77679 0.84535 1.23396 1.39382 1.48084 1.62978 2.09249 2.15361 2.58691 2.70891 3.03494 3.08151 3.50434 3.53800 3.55986 3.64554 3.97950 4.15316 4.36315 4.43118 4.44897 4.51073 4.52338 4.56095 4.60472 4.61812 4.66248 4.68825 4.71841 4.72813 4.77483 5.02434 5.11166 5.13425 5.19044 5.21227 5.26708 5.29995 5.52475 5.63756 5.78787 6.11128 6.27952 6.53021 6.69841 6.78888 7.20813 7.44825 7.73651 8.11547 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.016982 B = 0.002180 C = 0.002035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.408918 B =12838.259753 C =13757.696757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.162 3.838 3 C -0.156 4.156 4 C -0.156 4.156 5 N -0.115 5.115 6 N -0.071 5.071 7 N -0.296 5.296 8 C 0.146 3.854 9 C 0.249 3.751 10 N -0.728 5.728 11 C 0.701 3.299 12 O -0.564 6.564 13 N -0.663 5.663 14 C 0.385 3.615 15 C -0.327 4.327 16 C 0.114 3.886 17 C -0.466 4.466 18 H 0.067 0.933 19 C 0.052 3.948 20 N -0.837 5.837 21 Si 0.967 3.033 22 H -0.246 1.246 23 H -0.279 1.279 24 H -0.262 1.262 25 C -0.280 4.280 26 C 0.130 3.870 27 N -0.569 5.569 28 N -0.289 5.289 29 H 0.067 0.933 30 H 0.123 0.877 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.124 0.876 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.124 0.876 37 H 0.066 0.934 38 H 0.098 0.902 39 H 0.102 0.898 40 H 0.407 0.593 41 H 0.421 0.579 42 H 0.117 0.883 43 H 0.298 0.702 44 H 0.122 0.878 45 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.406 22.017 -11.465 31.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.083 3.917 3 C -0.214 4.214 4 C -0.214 4.214 5 N -0.031 5.031 6 N -0.063 5.063 7 N -0.167 5.167 8 C -0.137 4.137 9 C 0.122 3.878 10 N -0.387 5.387 11 C 0.401 3.599 12 O -0.437 6.437 13 N -0.312 5.312 14 C 0.155 3.845 15 C -0.353 4.353 16 C 0.106 3.894 17 C -0.497 4.497 18 H 0.086 0.914 19 C -0.165 4.165 20 N -0.462 5.462 21 Si 0.791 3.209 22 H -0.170 1.170 23 H -0.206 1.206 24 H -0.187 1.187 25 C -0.303 4.303 26 C -0.021 4.021 27 N -0.289 5.289 28 N -0.141 5.141 29 H 0.086 0.914 30 H 0.142 0.858 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.142 0.858 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.142 0.858 37 H 0.085 0.915 38 H 0.116 0.884 39 H 0.120 0.880 40 H 0.242 0.758 41 H 0.259 0.741 42 H 0.135 0.865 43 H 0.108 0.892 44 H 0.140 0.860 45 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -19.760 23.321 -10.720 32.392 hybrid contribution 0.058 -1.868 -0.542 1.946 sum -19.702 21.453 -11.261 31.229 Atomic orbital electron populations 1.22154 0.88592 1.04478 1.05612 1.22054 0.97669 0.93400 0.78539 1.22279 1.02662 0.91062 1.05391 1.22278 1.02634 1.00973 0.95558 1.51124 1.00520 1.33273 1.18187 1.78922 1.21987 1.09511 0.95839 1.75894 1.01224 1.19039 1.20564 1.25400 0.95239 1.00497 0.92588 1.19076 0.88452 0.83246 0.97029 1.44779 1.28919 1.19098 1.45886 1.15920 0.81223 0.80953 0.81846 1.91021 1.54893 1.63595 1.34196 1.42458 1.32788 1.17428 1.38524 1.17911 0.87485 0.87902 0.91244 1.21267 1.08223 0.95152 1.10631 1.17896 0.89973 0.93100 0.88474 1.19480 0.96682 0.94175 1.39378 0.91435 1.26819 1.05601 0.94015 0.90097 1.69626 1.39062 1.08798 1.28760 0.85472 0.76658 0.77696 0.81032 1.17041 1.20624 1.18662 1.21884 1.06697 0.97708 1.04021 1.22118 0.91855 0.92081 0.96078 1.67446 1.10385 1.37826 1.13194 1.74634 1.04080 1.19246 1.16138 0.91373 0.85823 0.91491 0.91464 0.85761 0.92103 0.92202 0.85788 0.91507 0.88387 0.88043 0.75795 0.74105 0.86511 0.89160 0.86016 0.82233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 7.91 71.98 0.57 -0.26 16 2 C 0.16 1.45 1.30 3.60 0.00 1.45 16 3 C -0.16 -0.92 8.66 71.98 0.62 -0.30 16 4 C -0.16 -1.00 8.67 71.98 0.62 -0.38 16 5 N -0.12 -2.04 3.73 -152.40 -0.57 -2.60 16 6 N -0.07 -1.56 12.24 37.02 0.45 -1.11 16 7 N -0.30 -7.51 12.50 -51.27 -0.64 -8.15 16 8 C 0.15 3.34 7.74 138.55 1.07 4.41 16 9 C 0.25 5.86 6.30 85.63 0.54 6.40 16 10 N -0.73 -18.58 5.55 -482.30 -2.68 -21.26 16 11 C 0.70 24.64 8.52 179.06 1.53 26.17 16 12 O -0.56 -24.54 14.60 -4.00 -0.06 -24.60 16 13 N -0.66 -23.77 5.40 -322.37 -1.74 -25.51 16 14 C 0.38 17.32 7.42 132.76 0.98 18.30 16 15 C -0.33 -15.32 6.95 23.00 0.16 -15.16 16 16 C 0.11 5.78 5.17 -21.11 -0.11 5.67 16 17 C -0.47 -25.26 9.67 23.52 0.23 -25.04 16 18 H 0.07 3.90 8.06 -2.91 -0.02 3.88 16 19 C 0.05 2.65 5.48 85.29 0.47 3.12 16 20 N -0.84 -43.77 13.92 21.84 0.30 -43.47 16 21 Si 0.97 41.12 24.43 68.60 1.68 42.79 16 22 H -0.25 -9.31 6.67 99.48 0.66 -8.65 16 23 H -0.28 -11.23 7.11 99.48 0.71 -10.52 16 24 H -0.26 -11.90 6.66 99.48 0.66 -11.24 16 25 C -0.28 -13.04 9.85 22.60 0.22 -12.81 16 26 C 0.13 5.78 11.10 84.27 0.94 6.72 16 27 N -0.57 -27.12 7.86 -194.27 -1.53 -28.65 16 28 N -0.29 -5.99 11.83 -51.21 -0.61 -6.60 16 29 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.12 -0.15 8.14 -2.38 -0.02 -0.17 16 31 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16 33 H 0.12 -0.09 8.14 -2.39 -0.02 -0.11 16 34 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 36 H 0.12 -0.02 8.14 -2.39 -0.02 -0.04 16 37 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 38 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 39 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 40 H 0.41 8.46 8.48 -92.71 -0.79 7.67 16 41 H 0.42 11.81 8.71 -92.71 -0.81 11.00 16 42 H 0.12 5.15 4.43 -2.91 -0.01 5.13 16 43 H 0.30 13.90 8.29 -92.71 -0.77 13.13 16 44 H 0.12 5.25 8.06 -2.91 -0.02 5.22 16 45 H 0.16 5.95 8.06 -2.91 -0.02 5.92 16 Total: -1.00 -73.70 380.86 1.84 -71.87 By element: Atomic # 1 Polarization: 29.63 SS G_CDS: -0.63 Total: 29.00 kcal Atomic # 6 Polarization: 10.44 SS G_CDS: 7.85 Total: 18.29 kcal Atomic # 7 Polarization: -130.35 SS G_CDS: -7.00 Total: -137.35 kcal Atomic # 8 Polarization: -24.54 SS G_CDS: -0.06 Total: -24.60 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 1.68 Total: 42.79 kcal Total: -73.70 1.84 -71.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001467112529.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.068 kcal (2) G-P(sol) polarization free energy of solvation -73.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds